Wall clock time and date at job start Mon Mar 30 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47255 * 2 1 4 4 C 1.37700 * 119.67183 * 265.67331 * 3 2 1 5 5 C 1.38156 * 120.48657 * 180.02562 * 4 3 2 6 6 C 1.39236 * 120.01413 * 0.21152 * 5 4 3 7 7 C 1.43194 * 120.00375 * 179.73864 * 6 5 4 8 8 N 6.85155 * 109.64248 * 359.50185 * 2 1 3 9 9 C 1.41212 * 119.99554 * 359.56175 * 6 5 4 10 10 S 1.75769 * 130.25571 * 180.15485 * 9 6 5 11 11 C 1.69980 * 93.22165 * 180.28240 * 10 9 6 12 12 C 1.36403 * 111.95718 * 359.97438 * 11 10 9 13 13 C 1.40783 * 123.29851 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00101 * 150.10048 * 13 12 11 15 15 C 1.39751 * 119.99553 * 330.09545 * 13 12 11 16 16 N 1.31048 * 120.00545 * 351.11608 * 15 13 12 17 17 Si 1.86802 * 119.99960 * 171.11872 * 15 13 12 18 18 H 1.48501 * 109.46913 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47341 * 120.00002 * 17 15 13 20 20 H 1.48502 * 109.47085 * 239.99900 * 17 15 13 21 21 C 1.39280 * 119.52331 * 0.45707 * 9 6 5 22 22 H 1.08992 * 109.47449 * 59.99566 * 1 2 3 23 23 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46776 * 299.99435 * 1 2 3 25 25 H 1.09003 * 109.47158 * 240.00317 * 2 1 3 26 26 H 1.09004 * 109.47087 * 120.00258 * 2 1 3 27 27 H 1.08005 * 119.75240 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.99728 * 179.97438 * 5 4 3 29 29 H 1.08000 * 124.02281 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00847 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3447 2.0334 -1.1930 5 6 2.8071 3.3351 -1.2126 6 6 2.9646 4.0362 -0.0200 7 6 3.4492 5.3836 -0.0401 8 7 3.8332 6.4526 -0.0561 9 6 2.6429 3.4199 1.2091 10 16 2.7324 4.0433 2.8501 11 6 2.1653 2.5941 3.5339 12 6 1.9064 1.6493 2.5847 13 6 1.4270 0.3607 2.8873 14 1 0.8020 -0.1631 2.1793 15 6 1.7600 -0.2407 4.1041 16 7 2.6538 0.3134 4.8860 17 14 0.9311 -1.8346 4.6159 18 1 -0.0320 -2.2512 3.5652 19 1 1.9584 -2.8923 4.7925 20 1 0.2085 -1.6277 5.8966 21 6 2.1779 2.1070 1.2176 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2281 1.4919 -2.1202 28 1 3.0501 3.8078 -2.1528 29 1 2.0266 2.4396 4.5937 30 1 2.8848 -0.1038 5.7307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396230560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:33 Heat of formation + Delta-G solvation = 38.748522 kcal Electronic energy + Delta-G solvation = -16064.705776 eV Core-core repulsion = 13528.992622 eV Total energy + Delta-G solvation = -2535.713154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66211 -37.85698 -36.55337 -34.95107 -34.08421 -30.74548 -29.94228 -27.76695 -25.23184 -24.18865 -22.28458 -21.59924 -19.92813 -18.44220 -17.30574 -16.86230 -16.45239 -15.70922 -15.32123 -15.21101 -14.75864 -14.58823 -14.39728 -13.99324 -13.77371 -13.56325 -13.10870 -12.95072 -12.86076 -12.73185 -12.52004 -12.11647 -12.00364 -11.77379 -11.58085 -11.35373 -11.11474 -10.92905 -9.93775 -9.17860 -8.55287 -8.42831 -6.23343 -0.20561 0.28569 1.02415 1.30379 1.43756 1.56899 1.59302 1.73941 1.91764 2.19848 2.28553 2.90206 2.97070 3.38434 4.00206 4.05746 4.27855 4.48968 4.58375 4.73876 4.75488 4.87273 5.11990 5.17219 5.28648 5.32112 5.36246 5.40790 5.62597 5.70165 5.75863 6.03973 6.10955 6.43723 6.59451 6.91357 7.01572 8.48724 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.008283 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.399093 B = 3379.447471 C = 4405.935128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.003 4.003 4 C -0.135 4.135 5 C -0.034 4.034 6 C -0.046 4.046 7 C 0.280 3.720 8 N -0.463 5.463 9 C -0.115 4.115 10 S 0.044 5.956 11 C -0.386 4.386 12 C 0.075 3.925 13 C -0.461 4.461 14 H 0.113 0.887 15 C 0.024 3.976 16 N -0.840 5.840 17 Si 0.974 3.026 18 H -0.243 1.243 19 H -0.272 1.272 20 H -0.278 1.278 21 C -0.094 4.094 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.176 0.824 28 H 0.171 0.829 29 H 0.126 0.874 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -3.983 -10.938 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 C -0.006 4.006 4 C -0.157 4.157 5 C -0.056 4.056 6 C -0.057 4.057 7 C -0.033 4.033 8 N -0.140 5.140 9 C -0.233 4.233 10 S 0.308 5.692 11 C -0.521 4.521 12 C 0.066 3.934 13 C -0.493 4.493 14 H 0.130 0.870 15 C -0.189 4.189 16 N -0.468 5.468 17 Si 0.796 3.204 18 H -0.165 1.165 19 H -0.197 1.197 20 H -0.204 1.204 21 C -0.103 4.103 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.095 0.905 27 H 0.193 0.807 28 H 0.188 0.812 29 H 0.143 0.857 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.068 -1.030 -9.970 10.234 hybrid contribution -0.524 -2.023 0.958 2.299 sum -2.593 -3.053 -9.012 9.862 Atomic orbital electron populations 1.21710 0.94041 1.02317 1.01709 1.20913 0.96908 0.91687 1.04289 1.20299 0.93087 0.96527 0.90677 1.21086 1.02022 0.94661 0.97884 1.21344 0.94501 0.94063 0.95681 1.15431 1.10283 0.86941 0.93008 1.25856 0.92315 0.92679 0.92499 1.81144 1.11736 1.12451 1.08653 1.22801 1.05442 0.98476 0.96573 1.81917 1.72638 1.18565 0.96115 1.24042 1.28439 0.96971 1.02667 1.17681 0.94010 0.94067 0.87652 1.19782 1.27878 0.99326 1.02363 0.86975 1.26747 0.93867 1.02447 0.95826 1.70006 1.26031 1.40159 1.10595 0.85244 0.79017 0.77060 0.79066 1.16535 1.19747 1.20364 1.19673 1.02653 0.92665 0.95332 0.91277 0.91151 0.94314 0.88367 0.90464 0.80671 0.81170 0.85651 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.03 71.98 0.65 -3.08 16 2 C -0.10 -2.91 5.33 29.85 0.16 -2.75 16 3 C 0.00 -0.11 5.19 -19.44 -0.10 -0.21 16 4 C -0.14 -3.30 9.60 22.12 0.21 -3.09 16 5 C -0.03 -0.85 9.73 22.49 0.22 -0.63 16 6 C -0.05 -1.58 5.77 -21.06 -0.12 -1.70 16 7 C 0.28 9.91 15.05 88.33 1.33 11.24 16 8 N -0.46 -17.38 18.54 19.00 0.35 -17.03 16 9 C -0.11 -4.81 6.31 23.25 0.15 -4.66 16 10 S 0.04 2.02 22.64 -56.49 -1.28 0.74 16 11 C -0.39 -20.36 9.45 67.39 0.64 -19.72 16 12 C 0.07 3.76 5.61 -20.87 -0.12 3.65 16 13 C -0.46 -22.34 7.31 23.26 0.17 -22.17 16 14 H 0.11 4.86 3.73 -2.91 -0.01 4.85 16 15 C 0.02 1.15 5.36 85.18 0.46 1.60 16 16 N -0.84 -44.22 11.14 21.80 0.24 -43.98 16 17 Si 0.97 36.64 29.57 68.60 2.03 38.67 16 18 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 21 C -0.09 -4.02 5.98 -20.26 -0.12 -4.14 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.04 1.26 6.91 -2.39 -0.02 1.24 16 25 H 0.10 2.08 8.04 -2.39 -0.02 2.06 16 26 H 0.08 2.73 5.45 -2.39 -0.01 2.71 16 27 H 0.18 2.64 8.05 -2.91 -0.02 2.62 16 28 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.13 7.23 6.72 -2.91 -0.02 7.21 16 30 H 0.28 13.56 8.30 -92.71 -0.77 12.79 16 Total: -1.00 -60.70 274.48 6.05 -54.65 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.19 Total: 12.60 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.52 Total: -45.66 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.60 Total: -61.00 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.28 Total: 0.74 kcal Total: -60.70 6.05 -54.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.396 kcal (2) G-P(sol) polarization free energy of solvation -60.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds