Wall clock time and date at job start Mon Mar 30 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47268 * 2 1 4 4 C 1.36892 * 122.48742 * 269.70903 * 3 2 1 5 5 C 1.39919 * 124.80270 * 0.24658 * 4 3 2 6 6 H 1.08005 * 119.99760 * 353.27586 * 5 4 3 7 7 C 1.40187 * 120.00121 * 173.27473 * 5 4 3 8 8 N 1.30755 * 119.99789 * 6.59997 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 186.60640 * 7 5 4 10 10 H 1.48495 * 109.47380 * 94.98298 * 9 7 5 11 11 H 1.48501 * 109.46897 * 214.98494 * 9 7 5 12 12 H 1.48500 * 109.47208 * 334.98498 * 9 7 5 13 13 S 1.75437 * 110.39650 * 180.26979 * 4 3 2 14 14 C 1.76049 * 91.82498 * 0.02562 * 13 4 3 15 15 C 1.39873 * 130.06742 * 179.97438 * 14 13 4 16 16 C 1.36195 * 120.79094 * 179.97438 * 15 14 13 17 17 C 1.40369 * 120.24130 * 0.02739 * 16 15 14 18 18 C 1.43203 * 119.92455 * 179.97438 * 17 16 15 19 19 N 6.27161 * 95.56065 * 73.68052 * 2 1 3 20 20 C 1.38498 * 120.15036 * 359.97438 * 17 16 15 21 21 C 1.39886 * 122.49460 * 89.99820 * 3 2 1 22 22 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47243 * 300.00004 * 1 2 3 24 24 H 1.08992 * 109.47309 * 60.00368 * 1 2 3 25 25 H 1.09004 * 109.47123 * 239.99459 * 2 1 3 26 26 H 1.09003 * 109.47475 * 120.00038 * 2 1 3 27 27 H 0.96999 * 119.99742 * 180.02562 * 8 7 5 28 28 H 1.08001 * 119.60878 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.88403 * 180.02562 * 16 15 14 30 30 H 1.07998 * 119.95371 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2829 2.1120 -1.1547 5 6 2.1044 1.6022 -2.4454 6 1 1.8491 0.5621 -2.5846 7 6 2.2568 2.4415 -3.5579 8 7 2.6908 3.6647 -3.3993 9 14 1.8399 1.8124 -5.2666 10 1 0.4480 2.1989 -5.6104 11 1 2.7767 2.4054 -6.2546 12 1 1.9636 0.3328 -5.2932 13 16 2.8603 3.7274 -0.7872 14 6 2.7511 3.4332 0.9451 15 6 3.0503 4.2744 2.0218 16 6 2.8937 3.8466 3.3053 17 6 2.4278 2.5483 3.5659 18 6 2.2661 2.1054 4.9180 19 7 2.1377 1.7540 5.9906 20 6 2.1242 1.6949 2.5182 21 6 2.2828 2.1293 1.1799 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7959 4.2456 -4.1691 28 1 3.4091 5.2755 1.8332 29 1 3.1287 4.5085 4.1257 30 1 1.7655 0.6968 2.7224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396230932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:02 Heat of formation + Delta-G solvation = 28.810362 kcal Electronic energy + Delta-G solvation = -15722.478195 eV Core-core repulsion = 13186.334090 eV Total energy + Delta-G solvation = -2536.144105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.71099 -36.38996 -35.34074 -33.82191 -31.13825 -30.08624 -29.25481 -25.67825 -23.74177 -22.18964 -21.66206 -19.15956 -17.88303 -17.14284 -16.23167 -15.20400 -14.54575 -14.36150 -13.57421 -13.45693 -13.34901 -13.18964 -12.71963 -12.50870 -12.26335 -12.14600 -11.87403 -11.69989 -11.45302 -11.30495 -11.06627 -10.65758 -10.44863 -10.35027 -9.93689 -9.76982 -9.39896 -9.16421 -8.59889 -7.58942 -7.32423 -6.53420 -4.78602 1.56916 1.91640 2.71091 2.78424 2.84296 3.08816 3.13100 3.29182 3.47839 3.66545 3.69426 4.52279 4.52832 4.87212 5.58801 5.72226 5.98259 6.03794 6.18714 6.33594 6.37621 6.49490 6.53108 6.63660 6.77148 6.84868 6.97201 7.03163 7.11610 7.15673 7.42064 7.54986 7.71138 7.88622 7.96470 8.15615 8.30676 9.51778 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.006455 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.373488 B = 4337.001402 C = 5124.871742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 C -0.324 4.324 4 C 0.058 3.942 5 C -0.375 4.375 6 H 0.103 0.897 7 C 0.054 3.946 8 N -0.773 5.773 9 Si 0.936 3.064 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.255 1.255 13 S 0.148 5.852 14 C -0.245 4.245 15 C -0.052 4.052 16 C -0.153 4.153 17 C -0.034 4.034 18 C 0.277 3.723 19 N -0.462 5.462 20 C -0.087 4.087 21 C 0.019 3.981 22 H 0.034 0.966 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.302 0.698 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 0.077 -2.140 2.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C -0.330 4.330 4 C -0.061 4.061 5 C -0.409 4.409 6 H 0.121 0.879 7 C -0.168 4.168 8 N -0.399 5.399 9 Si 0.759 3.241 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.179 1.179 13 S 0.412 5.588 14 C -0.361 4.361 15 C -0.074 4.074 16 C -0.176 4.176 17 C -0.041 4.041 18 C -0.037 4.037 19 N -0.138 5.138 20 C -0.110 4.110 21 C 0.011 3.989 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.128 0.975 -1.526 1.815 hybrid contribution -0.551 -1.146 -0.247 1.295 sum -0.679 -0.170 -1.773 1.906 Atomic orbital electron populations 1.21751 0.97470 0.99152 1.01549 1.19578 0.93825 0.93178 0.99688 1.18229 1.26043 0.98892 0.89833 1.21251 0.94641 0.94387 0.95857 1.19390 1.34865 0.98104 0.88510 0.87901 1.26336 0.92685 0.94275 1.03538 1.68634 1.29914 1.06554 1.34797 0.85764 0.79505 0.80554 0.78261 1.18778 1.19541 1.17859 1.84953 1.68894 1.14958 0.89983 1.23923 1.11366 0.98473 1.02341 1.19794 0.99061 0.97862 0.90705 1.20082 1.06789 0.94409 0.96306 1.15604 1.08419 0.95883 0.84169 1.26109 0.92280 0.92374 0.92959 1.81127 1.11096 1.09472 1.12133 1.20842 1.01541 0.98065 0.90590 1.17663 0.96558 0.92395 0.92283 0.94647 0.93696 0.92792 0.92825 0.94001 0.88435 0.87140 0.87004 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.89 37.15 0.37 -2.11 16 2 C -0.02 -0.44 5.67 -27.89 -0.16 -0.60 16 3 C -0.32 -7.11 5.20 -104.49 -0.54 -7.66 16 4 C 0.06 1.34 6.10 -39.44 -0.24 1.10 16 5 C -0.37 -8.34 8.84 -38.22 -0.34 -8.68 16 6 H 0.10 2.18 6.62 -52.48 -0.35 1.83 16 7 C 0.05 1.12 5.49 -17.28 -0.09 1.02 16 8 N -0.77 -16.58 10.62 55.56 0.59 -15.99 16 9 Si 0.94 15.68 29.57 -169.99 -5.03 10.66 16 10 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 11 H -0.27 -4.45 7.11 56.52 0.40 -4.05 16 12 H -0.26 -4.23 7.11 56.52 0.40 -3.83 16 13 S 0.15 3.28 20.16 -107.50 -2.17 1.11 16 14 C -0.25 -5.22 6.48 -38.11 -0.25 -5.46 16 15 C -0.05 -0.96 9.98 -39.70 -0.40 -1.36 16 16 C -0.15 -2.66 9.69 -39.51 -0.38 -3.05 16 17 C -0.03 -0.63 5.72 -107.07 -0.61 -1.24 16 18 C 0.28 4.99 15.31 -22.47 -0.34 4.65 16 19 N -0.46 -8.77 18.54 41.83 0.78 -7.99 16 20 C -0.09 -1.69 9.37 -38.20 -0.36 -2.05 16 21 C 0.02 0.42 5.83 -107.14 -0.63 -0.21 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 1.02 6.82 -51.93 -0.35 0.66 16 26 H 0.04 0.76 7.34 -51.93 -0.38 0.37 16 27 H 0.30 5.81 8.29 -40.82 -0.34 5.47 16 28 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 2.03 7.41 -52.49 -0.39 1.64 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -23.60 280.81 -8.29 -31.89 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.72 Total: 1.73 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -3.97 Total: -25.64 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 1.37 Total: -23.98 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.66 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.17 Total: 1.11 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -23.60 -8.29 -31.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.700 kcal (2) G-P(sol) polarization free energy of solvation -23.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds