Wall clock time and date at job start Mon Mar 30 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47268 * 2 1 4 4 C 1.36892 * 122.48742 * 269.70903 * 3 2 1 5 5 C 1.39919 * 124.80270 * 0.24658 * 4 3 2 6 6 H 1.08005 * 119.99760 * 353.27586 * 5 4 3 7 7 C 1.40187 * 120.00121 * 173.27473 * 5 4 3 8 8 N 1.30755 * 119.99789 * 6.59997 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 186.60640 * 7 5 4 10 10 H 1.48495 * 109.47380 * 94.98298 * 9 7 5 11 11 H 1.48501 * 109.46897 * 214.98494 * 9 7 5 12 12 H 1.48500 * 109.47208 * 334.98498 * 9 7 5 13 13 S 1.75437 * 110.39650 * 180.26979 * 4 3 2 14 14 C 1.76049 * 91.82498 * 0.02562 * 13 4 3 15 15 C 1.39873 * 130.06742 * 179.97438 * 14 13 4 16 16 C 1.36195 * 120.79094 * 179.97438 * 15 14 13 17 17 C 1.40369 * 120.24130 * 0.02739 * 16 15 14 18 18 C 1.43203 * 119.92455 * 179.97438 * 17 16 15 19 19 N 6.27161 * 95.56065 * 73.68052 * 2 1 3 20 20 C 1.38498 * 120.15036 * 359.97438 * 17 16 15 21 21 C 1.39886 * 122.49460 * 89.99820 * 3 2 1 22 22 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47243 * 300.00004 * 1 2 3 24 24 H 1.08992 * 109.47309 * 60.00368 * 1 2 3 25 25 H 1.09004 * 109.47123 * 239.99459 * 2 1 3 26 26 H 1.09003 * 109.47475 * 120.00038 * 2 1 3 27 27 H 0.96999 * 119.99742 * 180.02562 * 8 7 5 28 28 H 1.08001 * 119.60878 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.88403 * 180.02562 * 16 15 14 30 30 H 1.07998 * 119.95371 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2829 2.1120 -1.1547 5 6 2.1044 1.6022 -2.4454 6 1 1.8491 0.5621 -2.5846 7 6 2.2568 2.4415 -3.5579 8 7 2.6908 3.6647 -3.3993 9 14 1.8399 1.8124 -5.2666 10 1 0.4480 2.1989 -5.6104 11 1 2.7767 2.4054 -6.2546 12 1 1.9636 0.3328 -5.2932 13 16 2.8603 3.7274 -0.7872 14 6 2.7511 3.4332 0.9451 15 6 3.0503 4.2744 2.0218 16 6 2.8937 3.8466 3.3053 17 6 2.4278 2.5483 3.5659 18 6 2.2661 2.1054 4.9180 19 7 2.1377 1.7540 5.9906 20 6 2.1242 1.6949 2.5182 21 6 2.2828 2.1293 1.1799 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7959 4.2456 -4.1691 28 1 3.4091 5.2755 1.8332 29 1 3.1287 4.5085 4.1257 30 1 1.7655 0.6968 2.7224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396230932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:02 Heat of formation + Delta-G solvation = 20.567510 kcal Electronic energy + Delta-G solvation = -15722.835632 eV Core-core repulsion = 13186.334090 eV Total energy + Delta-G solvation = -2536.501542 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25016 -37.91439 -36.87268 -35.37317 -32.64448 -31.58294 -30.84783 -27.25138 -25.26387 -23.68466 -23.21541 -20.68291 -19.49662 -18.67585 -17.80761 -16.70976 -16.04403 -15.87141 -15.06890 -14.92465 -14.85504 -14.65325 -14.25115 -13.99820 -13.77669 -13.64006 -13.38002 -13.13165 -12.94379 -12.80088 -12.53055 -12.03035 -11.95215 -11.83811 -11.44933 -11.29484 -10.94088 -10.81409 -10.14054 -9.19865 -8.86998 -8.18699 -6.42031 0.04385 0.36768 1.33365 1.39658 1.46216 1.56234 1.66680 1.80413 1.95249 2.16225 2.17638 2.95513 3.02305 3.29697 4.12594 4.32285 4.50548 4.60198 4.74043 4.83009 4.88356 4.97836 5.00123 5.16684 5.27048 5.34789 5.47942 5.53524 5.62839 5.65259 5.83217 5.97473 6.14994 6.28706 6.49819 6.55476 6.67985 8.00195 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.006455 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.373488 B = 4337.001402 C = 5124.871742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.022 4.022 3 C -0.340 4.340 4 C 0.030 3.970 5 C -0.403 4.403 6 H 0.105 0.895 7 C 0.020 3.980 8 N -0.799 5.799 9 Si 1.002 2.998 10 H -0.261 1.261 11 H -0.264 1.264 12 H -0.253 1.253 13 S 0.123 5.877 14 C -0.261 4.261 15 C -0.057 4.057 16 C -0.137 4.137 17 C -0.030 4.030 18 C 0.291 3.709 19 N -0.473 5.473 20 C -0.089 4.089 21 C -0.003 4.003 22 H 0.061 0.939 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.310 0.690 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -0.029 -1.529 1.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C -0.347 4.347 4 C -0.089 4.089 5 C -0.436 4.436 6 H 0.123 0.877 7 C -0.199 4.199 8 N -0.426 5.426 9 Si 0.822 3.178 10 H -0.186 1.186 11 H -0.188 1.188 12 H -0.176 1.176 13 S 0.387 5.613 14 C -0.377 4.377 15 C -0.079 4.079 16 C -0.159 4.159 17 C -0.037 4.037 18 C -0.022 4.022 19 N -0.149 5.149 20 C -0.112 4.112 21 C -0.011 4.011 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.309 0.871 -0.899 1.289 hybrid contribution -0.464 -1.072 -0.255 1.196 sum -0.773 -0.201 -1.153 1.403 Atomic orbital electron populations 1.21652 0.96182 1.00592 1.00633 1.19602 0.94911 0.91831 0.99838 1.18606 1.26120 1.00087 0.89848 1.21573 0.95704 0.94857 0.96787 1.19616 1.36305 0.98604 0.89065 0.87743 1.27139 0.91978 0.94190 1.06552 1.68676 1.30371 1.07442 1.36064 0.84811 0.79195 0.79977 0.73861 1.18590 1.18789 1.17605 1.84798 1.69608 1.15465 0.91456 1.24157 1.12091 0.99149 1.02299 1.20103 0.98755 0.98655 0.90389 1.20454 1.04459 0.94257 0.96775 1.15654 1.07948 0.96133 0.83930 1.25878 0.91844 0.91951 0.92554 1.81159 1.11429 1.09813 1.12531 1.20947 1.01409 0.98845 0.90026 1.17885 0.97425 0.92756 0.93041 0.91971 0.94061 0.94178 0.93251 0.93109 0.87663 0.84823 0.83698 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.89 71.98 0.71 -3.85 16 2 C -0.02 -0.85 5.67 29.85 0.17 -0.68 16 3 C -0.34 -15.15 5.20 -19.78 -0.10 -15.25 16 4 C 0.03 1.42 6.10 22.36 0.14 1.55 16 5 C -0.40 -18.35 8.84 23.15 0.20 -18.14 16 6 H 0.10 4.54 6.62 -2.91 -0.02 4.52 16 7 C 0.02 0.86 5.49 85.33 0.47 1.33 16 8 N -0.80 -34.87 10.62 21.87 0.23 -34.64 16 9 Si 1.00 31.90 29.57 68.60 2.03 33.92 16 10 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 11 H -0.26 -8.00 7.11 99.48 0.71 -7.30 16 12 H -0.25 -7.85 7.11 99.48 0.71 -7.14 16 13 S 0.12 5.58 20.16 -56.49 -1.14 4.44 16 14 C -0.26 -11.04 6.48 23.22 0.15 -10.89 16 15 C -0.06 -2.00 9.98 22.19 0.22 -1.77 16 16 C -0.14 -4.35 9.69 22.31 0.22 -4.13 16 17 C -0.03 -1.04 5.72 -21.45 -0.12 -1.16 16 18 C 0.29 9.74 15.31 88.33 1.35 11.09 16 19 N -0.47 -16.78 18.54 19.00 0.35 -16.43 16 20 C -0.09 -3.34 9.37 23.16 0.22 -3.13 16 21 C 0.00 -0.12 5.83 -21.49 -0.13 -0.25 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.89 6.82 -2.38 -0.02 1.87 16 26 H 0.05 1.80 7.34 -2.39 -0.02 1.78 16 27 H 0.31 12.03 8.29 -92.71 -0.77 11.26 16 28 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.12 4.27 7.41 -2.91 -0.02 4.24 16 Total: -1.00 -50.12 280.81 6.14 -43.98 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.17 Total: 13.99 kcal Atomic # 6 Polarization: -48.77 SS G_CDS: 3.50 Total: -45.28 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.58 Total: -51.06 kcal Atomic # 14 Polarization: 31.90 SS G_CDS: 2.03 Total: 33.92 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.14 Total: 4.44 kcal Total: -50.12 6.14 -43.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.544 kcal (2) G-P(sol) polarization free energy of solvation -50.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds