Wall clock time and date at job start Mon Mar 30 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47442 * 2 1 4 4 S 1.69985 * 124.05825 * 268.25705 * 3 2 1 5 5 C 1.75813 * 93.20506 * 179.97438 * 4 3 2 6 6 C 1.39842 * 130.13803 * 179.97438 * 5 4 3 7 7 C 1.37804 * 120.72516 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.38800 * 0.02562 * 7 6 5 9 9 C 1.39008 * 120.08648 * 0.02562 * 8 7 6 10 10 C 1.43203 * 120.01409 * 179.97438 * 9 8 7 11 11 N 6.12651 * 102.53680 * 45.95897 * 2 1 3 12 12 C 1.39235 * 110.16460 * 359.97438 * 5 4 3 13 13 C 1.36599 * 124.05332 * 87.95078 * 3 2 1 14 14 C 1.40918 * 123.29149 * 0.02562 * 13 3 2 15 15 H 1.08002 * 119.99419 * 228.70384 * 14 13 3 16 16 C 1.39688 * 119.99921 * 48.70415 * 14 13 3 17 17 N 1.31075 * 120.00219 * 21.10558 * 16 14 13 18 18 Si 1.86805 * 119.99887 * 201.10030 * 16 14 13 19 19 H 1.48501 * 109.47130 * 90.00366 * 18 16 14 20 20 H 1.48497 * 109.47124 * 210.00196 * 18 16 14 21 21 H 1.48499 * 109.47213 * 330.00123 * 18 16 14 22 22 H 1.09003 * 109.46990 * 59.99716 * 1 2 3 23 23 H 1.09002 * 109.47541 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47314 * 299.99864 * 1 2 3 25 25 H 1.09006 * 109.47442 * 120.00030 * 2 1 3 26 26 H 1.08997 * 109.47257 * 240.00256 * 2 1 3 27 27 H 1.08005 * 119.63855 * 0.02562 * 6 5 4 28 28 H 1.08000 * 119.80497 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.95679 * 180.02562 * 8 7 6 30 30 H 0.97007 * 120.00130 * 174.37377 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3901 2.3040 -1.4076 5 6 2.8667 3.7364 -0.5064 6 6 3.3206 4.9783 -0.9617 7 6 3.6445 5.9791 -0.0715 8 6 3.5256 5.7696 1.2897 9 6 3.0778 4.5442 1.7697 10 6 2.9557 4.3287 3.1801 11 7 2.8598 4.1574 4.2990 12 6 2.7406 3.5071 0.8611 13 6 2.2492 2.1554 1.1310 14 6 2.0249 1.6590 2.4307 15 1 1.4585 2.2427 3.1413 16 6 2.5351 0.4121 2.7997 17 7 3.5371 -0.1091 2.1345 18 14 1.7895 -0.5126 4.2415 19 1 0.6897 -1.3839 3.7553 20 1 2.8339 -1.3476 4.8874 21 1 1.2523 0.4588 5.2280 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.4177 5.1552 -2.0227 28 1 3.9932 6.9327 -0.4394 29 1 3.7809 6.5589 1.9811 30 1 3.9445 -0.9349 2.4395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396231005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:26 Heat of formation + Delta-G solvation = 41.521665 kcal Electronic energy + Delta-G solvation = -16258.987986 eV Core-core repulsion = 13723.395085 eV Total energy + Delta-G solvation = -2535.592902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41407 -37.47888 -37.19325 -34.25179 -33.43682 -32.06873 -29.69397 -27.71492 -25.00846 -24.08579 -22.85870 -21.00937 -19.76614 -18.48217 -17.28571 -16.80565 -16.23205 -16.13983 -15.55667 -15.08119 -14.79040 -14.36981 -14.34678 -13.93356 -13.72474 -13.64879 -13.31124 -13.12677 -12.95699 -12.83047 -12.45385 -12.29802 -12.01895 -11.77614 -11.64178 -11.34360 -11.20517 -10.58268 -10.04142 -8.99189 -8.60439 -8.18673 -6.26971 -0.19064 0.31362 1.08567 1.20026 1.28297 1.36477 1.73486 1.89006 1.93596 2.12210 2.21323 2.88976 3.20137 3.24430 4.03851 4.19131 4.41514 4.47490 4.51295 4.64276 4.77842 4.86229 5.00648 5.11134 5.27558 5.31500 5.38008 5.48050 5.51340 5.59223 5.77383 6.01421 6.04345 6.50995 6.70122 6.87028 7.01371 8.45769 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.010870 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.972684 B = 2575.377050 C = 3757.483696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.035 4.035 3 C -0.294 4.294 4 S 0.093 5.907 5 C -0.167 4.167 6 C -0.053 4.053 7 C -0.110 4.110 8 C -0.065 4.065 9 C -0.027 4.027 10 C 0.287 3.713 11 N -0.477 5.477 12 C -0.055 4.055 13 C 0.061 3.939 14 C -0.482 4.482 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.832 5.832 18 Si 0.931 3.069 19 H -0.254 1.254 20 H -0.272 1.272 21 H -0.279 1.279 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.158 0.842 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 7.685 -8.441 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C -0.411 4.411 4 S 0.358 5.642 5 C -0.282 4.282 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.088 4.088 9 C -0.033 4.033 10 C -0.026 4.026 11 N -0.153 5.153 12 C -0.068 4.068 13 C 0.051 3.949 14 C -0.517 4.517 15 H 0.071 0.929 16 C -0.151 4.151 17 N -0.462 5.462 18 Si 0.755 3.245 19 H -0.178 1.178 20 H -0.197 1.197 21 H -0.204 1.204 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.176 0.824 28 H 0.200 0.800 29 H 0.177 0.823 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.410 6.725 -8.268 10.665 hybrid contribution -0.127 -0.738 2.312 2.431 sum -0.537 5.987 -5.956 8.462 Atomic orbital electron populations 1.21611 0.95280 1.00754 1.01067 1.19840 0.95082 0.91207 1.01328 1.23489 1.19341 1.02962 0.95316 1.81576 1.71409 1.02629 1.08563 1.22835 1.09030 1.00575 0.95791 1.21132 0.95486 0.89345 1.01736 1.21263 1.00448 1.00375 0.90990 1.21322 0.96241 0.93566 0.97702 1.16122 1.07951 0.96080 0.83097 1.25908 0.92270 0.91427 0.93034 1.81013 1.10664 1.09515 1.14156 1.19861 0.99308 0.94910 0.92686 1.17459 0.94294 0.89063 0.94058 1.18563 1.33635 1.02214 0.97263 0.92949 1.25896 0.93770 0.96894 0.98546 1.69923 1.17813 1.19569 1.38847 0.85972 0.79838 0.79054 0.79617 1.17820 1.19651 1.20382 0.92611 0.92261 0.94305 0.90854 0.93908 0.82412 0.79970 0.82295 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.89 71.98 0.71 -4.29 16 2 C -0.03 -1.56 5.79 29.84 0.17 -1.39 16 3 C -0.29 -13.82 5.22 25.30 0.13 -13.69 16 4 S 0.09 3.55 22.89 -56.49 -1.29 2.26 16 5 C -0.17 -6.23 6.44 22.90 0.15 -6.08 16 6 C -0.05 -1.41 10.05 22.56 0.23 -1.18 16 7 C -0.11 -2.39 10.01 22.16 0.22 -2.17 16 8 C -0.06 -1.77 9.72 22.45 0.22 -1.55 16 9 C -0.03 -1.07 5.78 -20.93 -0.12 -1.20 16 10 C 0.29 12.78 12.97 88.33 1.15 13.93 16 11 N -0.48 -22.80 18.36 19.00 0.35 -22.45 16 12 C -0.06 -2.47 6.01 -20.01 -0.12 -2.59 16 13 C 0.06 3.11 5.24 -20.90 -0.11 3.00 16 14 C -0.48 -26.31 7.30 23.28 0.17 -26.14 16 15 H 0.05 3.02 7.01 -2.91 -0.02 3.00 16 16 C 0.06 3.21 3.69 85.16 0.31 3.53 16 17 N -0.83 -44.75 11.44 21.79 0.25 -44.50 16 18 Si 0.93 42.34 29.61 68.60 2.03 44.38 16 19 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.07 3.66 4.46 -2.38 -0.01 3.65 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -64.21 278.26 5.62 -58.59 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.17 Total: 1.53 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.11 Total: -39.81 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.60 Total: -66.95 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.29 Total: 2.26 kcal Total: -64.21 5.62 -58.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.110 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds