Wall clock time and date at job start Mon Mar 30 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47499 * 2 1 4 4 C 1.32032 * 122.54084 * 265.02496 * 3 2 1 5 5 S 1.75272 * 111.38563 * 179.97438 * 4 3 2 6 6 C 1.76040 * 92.21146 * 359.97438 * 5 4 3 7 7 C 1.40548 * 130.16996 * 180.02562 * 6 5 4 8 8 C 1.35665 * 121.25453 * 179.97438 * 7 6 5 9 9 C 1.41052 * 120.30520 * 359.95136 * 8 7 6 10 10 C 1.40567 * 120.17491 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99997 * 206.12650 * 10 9 8 12 12 C 1.40249 * 119.99990 * 26.12245 * 10 9 8 13 13 N 1.30676 * 119.99868 * 26.02478 * 12 10 9 14 14 Si 1.86798 * 120.00169 * 206.02304 * 12 10 9 15 15 H 1.48505 * 109.47035 * 180.02562 * 14 12 10 16 16 H 1.48494 * 109.47543 * 300.00454 * 14 12 10 17 17 H 1.48504 * 109.46920 * 60.00552 * 14 12 10 18 18 C 1.41520 * 119.64700 * 0.28181 * 9 8 7 19 19 C 1.43201 * 120.19216 * 179.72715 * 18 9 8 20 20 N 3.17422 * 81.58672 * 100.05771 * 2 1 3 21 21 C 1.39961 * 109.55254 * 0.02562 * 6 5 4 22 22 H 1.08997 * 109.47465 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47212 * 300.00722 * 1 2 3 24 24 H 1.09002 * 109.47046 * 60.00018 * 1 2 3 25 25 H 1.08999 * 109.47212 * 239.99278 * 2 1 3 26 26 H 1.09004 * 109.46426 * 119.99555 * 2 1 3 27 27 H 1.07996 * 124.30153 * 359.95442 * 4 3 2 28 28 H 1.07993 * 119.37457 * 359.95431 * 7 6 5 29 29 H 1.07997 * 119.84416 * 179.97438 * 8 7 6 30 30 H 0.96998 * 120.00000 * 5.88399 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3602 2.0582 -1.1088 5 16 2.9051 3.6894 -0.7711 6 6 2.6707 3.4821 0.9613 7 6 2.8891 4.3806 2.0197 8 6 2.6437 4.0261 3.3060 9 6 2.1589 2.7366 3.6088 10 6 1.9051 2.3723 4.9425 11 1 1.9486 1.3340 5.2363 12 6 1.5954 3.3573 5.8916 13 7 1.0509 4.4827 5.5114 14 14 1.9611 3.0604 7.6992 15 1 1.5422 4.2454 8.4902 16 1 1.2138 1.8651 8.1658 17 1 3.4179 2.8347 7.8789 18 6 1.9346 1.8097 2.5631 19 6 1.4481 0.4955 2.8578 20 7 1.0656 -0.5484 3.0918 21 6 2.1917 2.1923 1.2180 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.3005 1.6288 -2.0980 28 1 3.2597 5.3720 1.8050 29 1 2.8201 4.7346 4.1017 30 1 0.7826 4.6038 4.5872 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396231023.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:12 Heat of formation + Delta-G solvation = 39.683199 kcal Electronic energy + Delta-G solvation = -16096.213507 eV Core-core repulsion = 13560.540883 eV Total energy + Delta-G solvation = -2535.672623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.89932 -36.22219 -35.26870 -33.85409 -31.19007 -30.33469 -28.47335 -25.74803 -23.73186 -22.66152 -21.54604 -19.40002 -18.25409 -17.57421 -15.83468 -15.18763 -14.65001 -14.28556 -14.01043 -13.84151 -13.40731 -13.22273 -12.44269 -12.39891 -12.15139 -12.02308 -11.85736 -11.59843 -11.53058 -11.32375 -10.89044 -10.65789 -10.59092 -10.20071 -10.17461 -10.08275 -9.82560 -9.33892 -8.54027 -7.80728 -7.71519 -7.02717 -4.88659 1.40878 2.17183 2.32066 2.74611 2.91986 2.99809 3.11146 3.19876 3.73714 3.89801 3.93412 4.34130 5.14531 5.18913 5.27635 5.38193 5.51867 5.72838 5.84219 5.91842 6.15737 6.17367 6.23333 6.33241 6.54495 6.60240 6.80005 6.91140 7.00047 7.12252 7.29623 7.36958 7.61426 7.73807 8.19595 8.31988 8.78655 9.56974 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.007719 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.616523 B = 3626.508751 C = 4590.099886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.090 4.090 4 C -0.196 4.196 5 S 0.026 5.974 6 C -0.237 4.237 7 C -0.040 4.040 8 C -0.164 4.164 9 C 0.129 3.871 10 C -0.477 4.477 11 H 0.087 0.913 12 C 0.039 3.961 13 N -0.762 5.762 14 Si 1.066 2.934 15 H -0.268 1.268 16 H -0.271 1.271 17 H -0.268 1.268 18 C -0.175 4.175 19 C 0.305 3.695 20 N -0.507 5.507 21 C 0.028 3.972 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 0.675 -5.757 6.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.330 4.330 5 S 0.289 5.711 6 C -0.352 4.352 7 C -0.062 4.062 8 C -0.184 4.184 9 C 0.122 3.878 10 C -0.503 4.503 11 H 0.105 0.895 12 C -0.187 4.187 13 N -0.383 5.383 14 Si 0.887 3.113 15 H -0.193 1.193 16 H -0.196 1.196 17 H -0.193 1.193 18 C -0.184 4.184 19 C -0.004 4.004 20 N -0.187 5.187 21 C 0.019 3.981 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.171 0.829 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.910 1.041 -4.892 5.354 hybrid contribution -0.263 -1.328 -0.920 1.636 sum 1.647 -0.287 -5.812 6.048 Atomic orbital electron populations 1.21669 0.94889 1.01176 1.02004 1.20352 0.96154 0.92004 1.02526 1.19728 1.02127 0.96882 0.91690 1.24606 1.08977 0.98220 1.01220 1.83397 1.72951 1.13154 1.01604 1.21757 1.19581 0.98619 0.95199 1.19847 0.98337 0.96728 0.91324 1.20909 1.04531 0.97702 0.95299 1.17257 0.88360 0.90374 0.91772 1.20810 1.38293 0.98002 0.93217 0.89495 1.27358 0.91772 0.91242 1.08361 1.70442 1.20088 1.24087 1.23641 0.83609 0.78362 0.77638 0.71691 1.19264 1.19581 1.19320 1.15490 1.22005 0.90225 0.90708 1.25492 0.91587 0.92198 0.91077 1.81024 1.14844 1.12836 1.09956 1.18578 0.96629 0.91582 0.91304 0.92860 0.92380 0.92976 0.91672 0.90645 0.82894 0.87733 0.85967 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.69 37.16 0.36 -1.94 16 2 C -0.07 -1.21 5.43 -27.88 -0.15 -1.36 16 3 C -0.09 -1.70 5.22 -103.84 -0.54 -2.24 16 4 C -0.20 -3.27 10.75 28.81 0.31 -2.96 16 5 S 0.03 0.45 23.24 -107.50 -2.50 -2.05 16 6 C -0.24 -4.85 6.50 -38.07 -0.25 -5.10 16 7 C -0.04 -0.81 9.96 -39.63 -0.39 -1.20 16 8 C -0.16 -3.57 7.88 -39.44 -0.31 -3.88 16 9 C 0.13 3.05 5.29 -106.70 -0.56 2.49 16 10 C -0.48 -11.42 8.37 -37.95 -0.32 -11.74 16 11 H 0.09 2.14 7.33 -52.49 -0.38 1.76 16 12 C 0.04 0.87 4.91 -17.29 -0.08 0.78 16 13 N -0.76 -17.61 12.32 55.56 0.68 -16.93 16 14 Si 1.07 19.35 30.01 -169.99 -5.10 14.25 16 15 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 16 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 17 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 18 C -0.17 -4.08 5.87 -105.20 -0.62 -4.70 16 19 C 0.31 7.16 10.29 -22.47 -0.23 6.93 16 20 N -0.51 -11.93 17.91 41.84 0.75 -11.18 16 21 C 0.03 0.61 5.99 -105.03 -0.63 -0.02 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 1.10 7.29 -51.93 -0.38 0.72 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 26 H 0.08 1.46 5.54 -51.93 -0.29 1.17 16 27 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.12 2.64 6.54 -52.49 -0.34 2.29 16 30 H 0.30 7.16 6.78 -40.82 -0.28 6.88 16 LS Contribution 274.91 15.07 4.14 4.14 Total: -1.00 -24.69 274.91 -8.02 -32.71 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.58 Total: 4.01 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -3.42 Total: -24.94 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 1.43 Total: -28.11 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.10 Total: 14.25 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.50 Total: -2.05 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -24.69 -8.02 -32.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231023.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.391 kcal (2) G-P(sol) polarization free energy of solvation -24.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds