Wall clock time and date at job start Mon Mar 30 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47499 * 2 1 4 4 C 1.32032 * 122.54084 * 265.02496 * 3 2 1 5 5 S 1.75272 * 111.38563 * 179.97438 * 4 3 2 6 6 C 1.76040 * 92.21146 * 359.97438 * 5 4 3 7 7 C 1.40548 * 130.16996 * 180.02562 * 6 5 4 8 8 C 1.35665 * 121.25453 * 179.97438 * 7 6 5 9 9 C 1.41052 * 120.30520 * 359.95136 * 8 7 6 10 10 C 1.40567 * 120.17491 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99997 * 206.12650 * 10 9 8 12 12 C 1.40249 * 119.99990 * 26.12245 * 10 9 8 13 13 N 1.30676 * 119.99868 * 26.02478 * 12 10 9 14 14 Si 1.86798 * 120.00169 * 206.02304 * 12 10 9 15 15 H 1.48505 * 109.47035 * 180.02562 * 14 12 10 16 16 H 1.48494 * 109.47543 * 300.00454 * 14 12 10 17 17 H 1.48504 * 109.46920 * 60.00552 * 14 12 10 18 18 C 1.41520 * 119.64700 * 0.28181 * 9 8 7 19 19 C 1.43201 * 120.19216 * 179.72715 * 18 9 8 20 20 N 3.17422 * 81.58672 * 100.05771 * 2 1 3 21 21 C 1.39961 * 109.55254 * 0.02562 * 6 5 4 22 22 H 1.08997 * 109.47465 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47212 * 300.00722 * 1 2 3 24 24 H 1.09002 * 109.47046 * 60.00018 * 1 2 3 25 25 H 1.08999 * 109.47212 * 239.99278 * 2 1 3 26 26 H 1.09004 * 109.46426 * 119.99555 * 2 1 3 27 27 H 1.07996 * 124.30153 * 359.95442 * 4 3 2 28 28 H 1.07993 * 119.37457 * 359.95431 * 7 6 5 29 29 H 1.07997 * 119.84416 * 179.97438 * 8 7 6 30 30 H 0.96998 * 120.00000 * 5.88399 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3602 2.0582 -1.1088 5 16 2.9051 3.6894 -0.7711 6 6 2.6707 3.4821 0.9613 7 6 2.8891 4.3806 2.0197 8 6 2.6437 4.0261 3.3060 9 6 2.1589 2.7366 3.6088 10 6 1.9051 2.3723 4.9425 11 1 1.9486 1.3340 5.2363 12 6 1.5954 3.3573 5.8916 13 7 1.0509 4.4827 5.5114 14 14 1.9611 3.0604 7.6992 15 1 1.5422 4.2454 8.4902 16 1 1.2138 1.8651 8.1658 17 1 3.4179 2.8347 7.8789 18 6 1.9346 1.8097 2.5631 19 6 1.4481 0.4955 2.8578 20 7 1.0656 -0.5484 3.0918 21 6 2.1917 2.1923 1.2180 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.3005 1.6288 -2.0980 28 1 3.2597 5.3720 1.8050 29 1 2.8201 4.7346 4.1017 30 1 0.7826 4.6038 4.5872 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396231023.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:12 Heat of formation + Delta-G solvation = 29.416620 kcal Electronic energy + Delta-G solvation = -16096.658699 eV Core-core repulsion = 13560.540883 eV Total energy + Delta-G solvation = -2536.117816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51029 -37.78165 -37.07310 -35.47395 -32.65516 -32.01613 -30.04545 -27.44702 -25.11785 -24.31036 -23.15450 -20.99036 -19.82393 -19.20945 -17.38726 -16.80200 -16.24256 -15.80536 -15.52477 -15.30502 -15.03898 -14.71544 -14.07949 -13.99797 -13.78456 -13.66657 -13.46904 -13.18908 -12.98822 -12.83893 -12.40947 -12.17088 -12.00150 -11.71655 -11.67700 -11.58707 -11.40124 -10.99439 -10.17738 -9.48748 -9.39896 -8.52378 -6.67172 -0.16383 0.48884 0.89467 1.24884 1.40805 1.49797 1.62047 1.79008 2.08214 2.19616 2.23239 2.58236 3.40701 3.57600 3.78370 3.98646 4.19261 4.29466 4.41210 4.49938 4.67415 4.71192 4.88512 4.92393 5.02380 5.16939 5.21285 5.32298 5.40564 5.43103 5.57835 5.68301 5.88257 6.03961 6.44197 6.55991 6.96051 7.78722 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.007719 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.616523 B = 3626.508751 C = 4590.099886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 C -0.120 4.120 4 C -0.175 4.175 5 S 0.084 5.916 6 C -0.258 4.258 7 C -0.032 4.032 8 C -0.179 4.179 9 C 0.115 3.885 10 C -0.509 4.509 11 H 0.068 0.932 12 C 0.014 3.986 13 N -0.775 5.775 14 Si 1.109 2.891 15 H -0.260 1.260 16 H -0.268 1.268 17 H -0.256 1.256 18 C -0.202 4.202 19 C 0.308 3.692 20 N -0.522 5.522 21 C 0.014 3.986 22 H 0.063 0.937 23 H 0.023 0.977 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.195 0.805 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 1.231 -7.912 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.133 4.133 4 C -0.309 4.309 5 S 0.347 5.653 6 C -0.373 4.373 7 C -0.054 4.054 8 C -0.200 4.200 9 C 0.108 3.892 10 C -0.536 4.536 11 H 0.086 0.914 12 C -0.208 4.208 13 N -0.395 5.395 14 Si 0.925 3.075 15 H -0.184 1.184 16 H -0.193 1.193 17 H -0.181 1.181 18 C -0.211 4.211 19 C 0.000 4.000 20 N -0.202 5.202 21 C 0.004 3.996 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.212 0.788 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.585 1.604 -7.074 7.700 hybrid contribution -0.437 -1.472 -0.511 1.618 sum 2.148 0.132 -7.584 7.884 Atomic orbital electron populations 1.21630 0.94645 1.01660 1.01278 1.20336 0.96344 0.91301 1.02694 1.19797 1.04494 0.97838 0.91203 1.25130 1.05672 0.97743 1.02315 1.83227 1.71670 1.12871 0.97525 1.22247 1.18715 0.98297 0.98029 1.20159 0.96646 0.97877 0.90672 1.20882 1.05747 0.97085 0.96257 1.17550 0.88260 0.91431 0.91932 1.20851 1.40885 0.97521 0.94326 0.91355 1.28476 0.90584 0.90443 1.11254 1.70529 1.21360 1.24673 1.22934 0.83084 0.78890 0.77782 0.67695 1.18361 1.19298 1.18066 1.15773 1.23213 0.90151 0.91982 1.25666 0.91316 0.92324 0.90677 1.80972 1.15585 1.13216 1.10462 1.18948 0.96387 0.92703 0.91598 0.91817 0.95793 0.90846 0.88392 0.93474 0.78779 0.84798 0.86267 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.69 71.98 0.70 -3.56 16 2 C -0.07 -2.19 5.43 29.85 0.16 -2.03 16 3 C -0.12 -4.25 5.22 -19.04 -0.10 -4.35 16 4 C -0.17 -5.06 10.75 66.89 0.72 -4.34 16 5 S 0.08 2.53 23.24 -56.49 -1.31 1.22 16 6 C -0.26 -10.15 6.50 23.25 0.15 -10.00 16 7 C -0.03 -1.25 9.96 22.24 0.22 -1.03 16 8 C -0.18 -7.95 7.88 22.36 0.18 -7.78 16 9 C 0.11 5.64 5.29 -21.21 -0.11 5.52 16 10 C -0.51 -25.55 8.37 23.33 0.20 -25.35 16 11 H 0.07 3.58 7.33 -2.91 -0.02 3.56 16 12 C 0.01 0.66 4.91 85.35 0.42 1.08 16 13 N -0.77 -36.73 12.32 21.88 0.27 -36.46 16 14 Si 1.11 39.48 30.01 68.60 2.06 41.54 16 15 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 16 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 17 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 18 C -0.20 -9.72 5.87 -20.24 -0.12 -9.84 16 19 C 0.31 15.04 10.29 88.33 0.91 15.95 16 20 N -0.52 -25.50 17.91 19.01 0.34 -25.16 16 21 C 0.01 0.58 5.99 -20.13 -0.12 0.46 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 23 H 0.02 0.89 7.29 -2.39 -0.02 0.87 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.10 2.52 8.09 -2.39 -0.02 2.50 16 26 H 0.05 1.81 5.54 -2.39 -0.01 1.80 16 27 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 28 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.12 5.28 6.54 -2.91 -0.02 5.26 16 30 H 0.29 14.33 6.78 -92.71 -0.63 13.70 16 Total: -1.00 -54.82 274.91 5.87 -48.95 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.32 Total: 15.18 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 3.20 Total: -45.26 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.61 Total: -61.62 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.06 Total: 41.54 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -54.82 5.87 -48.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231023.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.365 kcal (2) G-P(sol) polarization free energy of solvation -54.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds