Wall clock time and date at job start Mon Mar 30 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47198 * 2 1 4 4 C 1.32722 * 122.10254 * 268.28074 * 3 2 1 5 5 S 1.75480 * 110.67751 * 179.89431 * 4 3 2 6 6 C 1.76224 * 91.54243 * 0.30842 * 5 4 3 7 7 C 1.39928 * 130.12420 * 179.80397 * 6 5 4 8 8 C 1.37312 * 122.46713 * 180.02562 * 7 6 5 9 9 C 1.39553 * 120.90818 * 0.02562 * 8 7 6 10 10 C 1.43202 * 120.44762 * 180.02562 * 9 8 7 11 11 N 6.43790 * 94.66330 * 72.40123 * 2 1 3 12 12 C 1.46238 * 119.10310 * 359.97438 * 9 8 7 13 13 C 1.39894 * 120.71380 * 180.02562 * 12 9 8 14 14 H 1.07995 * 120.00041 * 130.30119 * 13 12 9 15 15 C 1.40360 * 120.00129 * 310.29908 * 13 12 9 16 16 N 1.30625 * 120.00113 * 160.85600 * 15 13 12 17 17 Si 1.86797 * 120.00096 * 340.85114 * 15 13 12 18 18 H 1.48498 * 109.47349 * 94.16598 * 17 15 13 19 19 H 1.48502 * 109.47609 * 214.16408 * 17 15 13 20 20 H 1.48503 * 109.47149 * 334.16384 * 17 15 13 21 21 C 1.39749 * 109.20226 * 359.82837 * 6 5 4 22 22 H 1.09002 * 109.47390 * 60.00000 * 1 2 3 23 23 H 1.09003 * 109.47670 * 300.00432 * 1 2 3 24 24 H 1.09004 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46795 * 119.99554 * 2 1 3 26 26 H 1.08994 * 109.47780 * 239.99757 * 2 1 3 27 27 H 1.08003 * 124.65936 * 0.02562 * 4 3 2 28 28 H 1.08006 * 118.77227 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.55058 * 179.97438 * 8 7 6 30 30 H 0.97003 * 120.00358 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2992 2.0746 -1.1238 5 16 2.8599 3.7007 -0.7764 6 6 2.7177 3.4302 0.9591 7 6 2.9928 4.2868 2.0308 8 6 2.8240 3.9076 3.3397 9 6 2.3639 2.6302 3.6623 10 6 2.1909 2.2453 5.0307 11 7 2.0533 1.9401 6.1163 12 6 2.0596 1.6904 2.5839 13 6 1.5958 0.4017 2.8689 14 1 0.7174 0.0212 2.3691 15 6 2.2723 -0.3967 3.8043 16 7 1.6673 -1.4173 4.3508 17 14 4.0378 0.0002 4.2678 18 1 4.0509 0.8489 5.4863 19 1 4.7749 -1.2610 4.5352 20 1 4.6913 0.7280 3.1505 21 6 2.2522 2.1321 1.1854 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 2.1849 1.6630 -2.1158 28 1 3.3512 5.2838 1.8207 29 1 3.0513 4.6072 4.1305 30 1 2.1346 -1.9689 4.9975 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396231078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:29 Heat of formation + Delta-G solvation = 60.332925 kcal Electronic energy + Delta-G solvation = -16423.658515 eV Core-core repulsion = 13888.881331 eV Total energy + Delta-G solvation = -2534.777184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.71663 -36.12714 -34.68645 -34.03968 -31.49261 -30.44758 -28.57685 -25.53829 -23.95114 -22.30358 -21.44326 -19.06419 -18.39427 -16.72273 -16.40827 -15.33976 -14.85025 -14.52982 -13.61199 -13.38166 -13.23977 -13.07370 -12.89709 -12.53283 -12.16962 -11.97802 -11.65177 -11.62429 -11.43398 -11.24660 -10.95088 -10.67729 -10.34016 -10.24885 -10.04786 -9.91789 -9.80454 -9.36932 -8.30899 -7.67536 -7.33799 -6.92763 -4.88841 1.46158 1.93884 2.31100 2.72709 2.90517 3.03260 3.10622 3.13532 3.77095 3.80667 3.94252 4.29275 4.96771 5.16536 5.52686 5.59071 5.75873 5.87362 6.00902 6.03558 6.17916 6.27736 6.46460 6.54196 6.60340 6.66131 6.81418 6.88216 7.00335 7.27322 7.29673 7.46275 7.48167 7.88833 8.11701 8.27296 8.70901 9.62524 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010628 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.334740 B = 2633.935954 C = 3454.058529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.026 4.026 4 C -0.263 4.263 5 S 0.025 5.975 6 C -0.060 4.060 7 C -0.217 4.217 8 C 0.003 3.997 9 C -0.190 4.190 10 C 0.288 3.712 11 N -0.482 5.482 12 C 0.168 3.832 13 C -0.424 4.424 14 H 0.122 0.878 15 C 0.092 3.908 16 N -0.763 5.763 17 Si 0.875 3.125 18 H -0.243 1.243 19 H -0.276 1.276 20 H -0.239 1.239 21 C -0.146 4.146 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 3.426 -7.787 8.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 C -0.037 4.037 4 C -0.396 4.396 5 S 0.289 5.711 6 C -0.177 4.177 7 C -0.241 4.241 8 C -0.020 4.020 9 C -0.198 4.198 10 C -0.023 4.023 11 N -0.160 5.160 12 C 0.160 3.840 13 C -0.450 4.450 14 H 0.139 0.861 15 C -0.134 4.134 16 N -0.383 5.383 17 Si 0.697 3.303 18 H -0.167 1.167 19 H -0.202 1.202 20 H -0.162 1.162 21 C -0.154 4.154 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.168 0.832 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.154 3.882 -6.957 8.253 hybrid contribution 0.344 -1.003 0.580 1.209 sum 2.498 2.879 -6.377 7.429 Atomic orbital electron populations 1.21677 0.95279 1.01011 1.01681 1.20579 0.95810 0.92135 1.03395 1.18513 0.97503 0.96799 0.90887 1.24508 1.16453 0.97435 1.01204 1.83619 1.72035 1.15156 1.00284 1.22530 1.02411 0.97243 0.95466 1.19365 1.15265 0.99193 0.90316 1.20348 0.93097 0.93408 0.95164 1.16799 1.22918 0.95335 0.84787 1.25335 0.92118 0.92364 0.92445 1.81051 1.13196 1.08914 1.12882 1.19267 0.86026 0.91673 0.87044 1.19633 1.11009 0.97269 1.17070 0.86066 1.26236 1.01164 0.94156 0.91849 1.69552 1.38242 1.12971 1.17585 0.86813 0.81113 0.79829 0.82576 1.16699 1.20212 1.16191 1.19066 1.09597 0.93395 0.93313 0.93665 0.91867 0.93015 0.87948 0.92641 0.83155 0.87631 0.87100 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.27 37.15 0.34 -1.90 16 2 C -0.08 -1.39 5.41 -27.89 -0.15 -1.54 16 3 C -0.03 -0.49 5.07 -105.85 -0.54 -1.03 16 4 C -0.26 -4.48 10.83 28.85 0.31 -4.17 16 5 S 0.02 0.42 23.30 -107.50 -2.50 -2.09 16 6 C -0.06 -1.19 6.48 -38.38 -0.25 -1.44 16 7 C -0.22 -4.06 9.94 -39.29 -0.39 -4.45 16 8 C 0.00 0.07 9.68 -39.43 -0.38 -0.32 16 9 C -0.19 -4.20 4.79 -104.27 -0.50 -4.70 16 10 C 0.29 6.74 10.67 -22.47 -0.24 6.50 16 11 N -0.48 -11.82 17.58 41.84 0.74 -11.08 16 12 C 0.17 3.80 4.78 -102.10 -0.49 3.31 16 13 C -0.42 -9.94 6.57 -38.16 -0.25 -10.19 16 14 H 0.12 2.85 5.07 -52.49 -0.27 2.59 16 15 C 0.09 2.19 4.71 -17.27 -0.08 2.11 16 16 N -0.76 -18.61 13.92 55.57 0.77 -17.84 16 17 Si 0.87 19.52 24.74 -169.99 -4.21 15.32 16 18 H -0.24 -5.64 5.54 56.52 0.31 -5.33 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.24 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.15 -3.09 6.02 -104.72 -0.63 -3.72 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.13 6.81 -51.93 -0.35 0.78 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 2.00 5.52 -51.93 -0.29 1.72 16 26 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 28 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 267.75 15.07 4.03 4.03 Total: -1.00 -25.08 267.75 -7.07 -32.15 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.66 Total: 1.04 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.24 Total: -21.53 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 1.51 Total: -28.93 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.21 Total: 15.32 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.50 Total: -2.09 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.08 -7.07 -32.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.485 kcal (2) G-P(sol) polarization free energy of solvation -25.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds