Wall clock time and date at job start Mon Mar 30 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47198 * 2 1 4 4 C 1.32722 * 122.10254 * 268.28074 * 3 2 1 5 5 S 1.75480 * 110.67751 * 179.89431 * 4 3 2 6 6 C 1.76224 * 91.54243 * 0.30842 * 5 4 3 7 7 C 1.39928 * 130.12420 * 179.80397 * 6 5 4 8 8 C 1.37312 * 122.46713 * 180.02562 * 7 6 5 9 9 C 1.39553 * 120.90818 * 0.02562 * 8 7 6 10 10 C 1.43202 * 120.44762 * 180.02562 * 9 8 7 11 11 N 6.43790 * 94.66330 * 72.40123 * 2 1 3 12 12 C 1.46238 * 119.10310 * 359.97438 * 9 8 7 13 13 C 1.39894 * 120.71380 * 180.02562 * 12 9 8 14 14 H 1.07995 * 120.00041 * 130.30119 * 13 12 9 15 15 C 1.40360 * 120.00129 * 310.29908 * 13 12 9 16 16 N 1.30625 * 120.00113 * 160.85600 * 15 13 12 17 17 Si 1.86797 * 120.00096 * 340.85114 * 15 13 12 18 18 H 1.48498 * 109.47349 * 94.16598 * 17 15 13 19 19 H 1.48502 * 109.47609 * 214.16408 * 17 15 13 20 20 H 1.48503 * 109.47149 * 334.16384 * 17 15 13 21 21 C 1.39749 * 109.20226 * 359.82837 * 6 5 4 22 22 H 1.09002 * 109.47390 * 60.00000 * 1 2 3 23 23 H 1.09003 * 109.47670 * 300.00432 * 1 2 3 24 24 H 1.09004 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46795 * 119.99554 * 2 1 3 26 26 H 1.08994 * 109.47780 * 239.99757 * 2 1 3 27 27 H 1.08003 * 124.65936 * 0.02562 * 4 3 2 28 28 H 1.08006 * 118.77227 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.55058 * 179.97438 * 8 7 6 30 30 H 0.97003 * 120.00358 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2992 2.0746 -1.1238 5 16 2.8599 3.7007 -0.7764 6 6 2.7177 3.4302 0.9591 7 6 2.9928 4.2868 2.0308 8 6 2.8240 3.9076 3.3397 9 6 2.3639 2.6302 3.6623 10 6 2.1909 2.2453 5.0307 11 7 2.0533 1.9401 6.1163 12 6 2.0596 1.6904 2.5839 13 6 1.5958 0.4017 2.8689 14 1 0.7174 0.0212 2.3691 15 6 2.2723 -0.3967 3.8043 16 7 1.6673 -1.4173 4.3508 17 14 4.0378 0.0002 4.2678 18 1 4.0509 0.8489 5.4863 19 1 4.7749 -1.2610 4.5352 20 1 4.6913 0.7280 3.1505 21 6 2.2522 2.1321 1.1854 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 2.1849 1.6630 -2.1158 28 1 3.3512 5.2838 1.8207 29 1 3.0513 4.6072 4.1305 30 1 2.1346 -1.9689 4.9975 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396231078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:29 Heat of formation + Delta-G solvation = 48.338961 kcal Electronic energy + Delta-G solvation = -16424.178612 eV Core-core repulsion = 13888.881331 eV Total energy + Delta-G solvation = -2535.297281 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26067 -37.80484 -36.28490 -35.77307 -33.01192 -32.00996 -30.10056 -27.17263 -25.39155 -23.82150 -23.03138 -20.59285 -20.03100 -18.31091 -17.98073 -16.97022 -16.40419 -16.06132 -15.11938 -15.07194 -14.93739 -14.61879 -14.41324 -14.14422 -13.76434 -13.54252 -13.24932 -13.21505 -12.99761 -12.75820 -12.58735 -12.31469 -11.90819 -11.78387 -11.50342 -11.42956 -11.28239 -11.14082 -9.86869 -9.20717 -9.08149 -8.40496 -6.61325 -0.06536 0.25700 0.87131 1.15699 1.22111 1.29834 1.34346 1.58029 1.98150 1.99786 2.26662 2.51226 3.27972 3.47354 4.10169 4.19334 4.38173 4.46029 4.61339 4.66220 4.71742 4.90652 4.97010 5.08918 5.15542 5.23253 5.32672 5.46130 5.51290 5.73134 5.77802 5.89391 5.94366 6.18223 6.44330 6.55350 6.90793 7.91315 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010628 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.334740 B = 2633.935954 C = 3454.058529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.056 4.056 4 C -0.244 4.244 5 S 0.086 5.914 6 C -0.093 4.093 7 C -0.197 4.197 8 C -0.004 4.004 9 C -0.209 4.209 10 C 0.295 3.705 11 N -0.513 5.513 12 C 0.159 3.841 13 C -0.446 4.446 14 H 0.110 0.890 15 C 0.074 3.926 16 N -0.803 5.803 17 Si 0.902 3.098 18 H -0.258 1.258 19 H -0.267 1.267 20 H -0.242 1.242 21 C -0.158 4.158 22 H 0.063 0.937 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.184 0.816 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 5.393 -10.563 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C -0.067 4.067 4 C -0.377 4.377 5 S 0.351 5.649 6 C -0.209 4.209 7 C -0.221 4.221 8 C -0.028 4.028 9 C -0.218 4.218 10 C -0.015 4.015 11 N -0.192 5.192 12 C 0.151 3.849 13 C -0.473 4.473 14 H 0.127 0.873 15 C -0.148 4.148 16 N -0.425 5.425 17 Si 0.724 3.276 18 H -0.183 1.183 19 H -0.192 1.192 20 H -0.164 1.164 21 C -0.166 4.166 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.201 0.799 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.026 5.861 -9.747 11.769 hybrid contribution 0.106 -1.366 1.150 1.789 sum 3.132 4.495 -8.596 10.194 Atomic orbital electron populations 1.21613 0.94666 1.01548 1.01149 1.20519 0.96350 0.91552 1.03218 1.18668 0.99416 0.97740 0.90848 1.25027 1.13068 0.97537 1.02059 1.83449 1.70516 1.14047 0.96839 1.22986 1.02731 0.97090 0.98138 1.19817 1.12388 1.00218 0.89703 1.20660 0.92860 0.92674 0.96576 1.17093 1.24092 0.96689 0.83897 1.25676 0.91416 0.91639 0.92721 1.81030 1.14518 1.09792 1.13890 1.19474 0.85711 0.91434 0.88262 1.19541 1.11690 0.98056 1.18001 0.87285 1.26520 1.02258 0.94138 0.91848 1.69578 1.38976 1.14539 1.19454 0.86410 0.80053 0.79697 0.81431 1.18273 1.19210 1.16431 1.19365 1.09440 0.94519 0.93301 0.91799 0.94551 0.92048 0.90743 0.90130 0.79872 0.84273 0.84255 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.27 71.98 0.67 -3.49 16 2 C -0.08 -2.59 5.41 29.85 0.16 -2.43 16 3 C -0.06 -1.99 5.07 -20.62 -0.10 -2.10 16 4 C -0.24 -7.25 10.83 66.65 0.72 -6.53 16 5 S 0.09 2.51 23.30 -56.49 -1.32 1.19 16 6 C -0.09 -3.39 6.48 23.05 0.15 -3.24 16 7 C -0.20 -6.69 9.94 22.46 0.22 -6.46 16 8 C 0.00 -0.16 9.68 22.37 0.22 0.06 16 9 C -0.21 -9.19 4.79 -19.64 -0.09 -9.29 16 10 C 0.29 14.01 10.67 88.33 0.94 14.96 16 11 N -0.51 -25.73 17.58 19.01 0.33 -25.39 16 12 C 0.16 7.24 4.78 -18.23 -0.09 7.15 16 13 C -0.45 -21.64 6.57 23.19 0.15 -21.49 16 14 H 0.11 5.43 5.07 -2.91 -0.01 5.41 16 15 C 0.07 3.66 4.71 85.39 0.40 4.06 16 16 N -0.80 -41.02 13.92 21.90 0.30 -40.71 16 17 Si 0.90 40.85 24.74 68.60 1.70 42.54 16 18 H -0.26 -12.22 5.54 99.48 0.55 -11.67 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.24 -10.80 7.11 99.48 0.71 -10.10 16 21 C -0.16 -6.46 6.02 -19.92 -0.12 -6.58 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.32 6.81 -2.39 -0.02 1.30 16 24 H 0.06 1.76 8.14 -2.38 -0.02 1.75 16 25 H 0.07 2.97 5.52 -2.38 -0.01 2.96 16 26 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 27 H 0.18 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 29 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.30 14.11 8.29 -92.71 -0.77 13.34 16 Total: -1.00 -54.72 267.75 5.27 -49.44 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.02 Total: 8.30 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.23 Total: -35.38 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 0.64 Total: -66.10 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.70 Total: 42.54 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.32 Total: 1.19 kcal Total: -54.72 5.27 -49.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.782 kcal (2) G-P(sol) polarization free energy of solvation -54.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds