Wall clock time and date at job start Mon Mar 30 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47130 * 2 1 4 4 C 1.32721 * 122.09623 * 266.27959 * 3 2 1 5 5 S 1.75522 * 110.63272 * 179.89986 * 4 3 2 6 6 C 1.76028 * 91.49345 * 0.30612 * 5 4 3 7 7 C 1.39545 * 109.36978 * 359.83458 * 6 5 4 8 8 C 1.47928 * 118.04000 * 180.02562 * 7 6 5 9 9 C 1.40172 * 120.26090 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99930 * 326.22394 * 9 8 7 11 11 C 1.40279 * 120.00030 * 146.21724 * 9 8 7 12 12 N 1.30659 * 120.00170 * 350.40939 * 11 9 8 13 13 Si 1.86803 * 120.00147 * 170.41029 * 11 9 8 14 14 H 1.48503 * 109.46820 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.47073 * 119.99937 * 13 11 9 16 16 H 1.48504 * 109.47301 * 240.00378 * 13 11 9 17 17 C 1.40657 * 119.48581 * 0.02562 * 8 7 6 18 18 C 1.36002 * 120.49706 * 359.97438 * 17 8 7 19 19 C 1.39832 * 121.05222 * 0.02562 * 18 17 8 20 20 C 1.43202 * 119.47990 * 180.02562 * 19 18 17 21 21 N 7.23375 * 108.21607 * 13.55156 * 2 1 3 22 22 H 1.09002 * 109.47217 * 299.99828 * 1 2 3 23 23 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47276 * 59.99778 * 1 2 3 25 25 H 1.09001 * 109.47276 * 120.00221 * 2 1 3 26 26 H 1.09002 * 109.47217 * 240.00172 * 2 1 3 27 27 H 1.07994 * 124.68046 * 0.02660 * 4 3 2 28 28 H 0.97001 * 119.99813 * 179.97438 * 12 11 9 29 29 H 1.07999 * 119.75821 * 179.97438 * 17 8 7 30 30 H 1.08003 * 119.47081 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3362 2.0614 -1.1220 5 16 2.8855 3.6917 -0.7741 6 6 2.6856 3.4391 0.9565 7 6 2.2134 2.1459 1.1840 8 6 1.9757 1.7284 2.5831 9 6 1.5012 0.4399 2.8649 10 1 0.8202 -0.0460 2.1819 11 6 1.9109 -0.2183 4.0339 12 7 2.8722 0.2828 4.7632 13 14 1.0821 -1.8115 4.5481 14 1 0.0320 -2.1647 3.5592 15 1 2.0921 -2.8985 4.6064 16 1 0.4635 -1.6381 5.8870 17 6 2.2286 2.6349 3.6285 18 6 2.6887 3.8864 3.3607 19 6 2.9208 4.3036 2.0464 20 6 3.4059 5.6288 1.8031 21 7 3.7913 6.6799 1.6101 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.2546 1.6386 -2.1124 28 1 3.1552 -0.1722 5.5717 29 1 2.0562 2.3349 4.6516 30 1 2.8769 4.5691 4.1761 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396231224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:32 Heat of formation + Delta-G solvation = 49.043243 kcal Electronic energy + Delta-G solvation = -16106.487085 eV Core-core repulsion = 13571.220343 eV Total energy + Delta-G solvation = -2535.266741 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.68733 -36.05333 -35.08411 -34.10200 -31.39966 -30.08576 -28.36529 -25.94318 -23.75900 -22.00895 -21.55129 -19.08467 -18.29024 -17.17145 -15.92584 -15.11284 -14.69048 -14.58201 -13.67503 -13.47446 -13.19274 -13.06099 -12.65012 -12.48121 -11.91717 -11.84991 -11.79171 -11.59444 -11.47750 -11.35688 -10.87868 -10.84305 -10.43999 -10.28377 -10.05717 -9.80034 -9.70338 -9.60860 -8.23447 -7.56704 -7.30736 -6.90658 -4.83867 1.76413 2.05827 2.48033 2.76246 2.79685 2.84927 2.92068 3.33264 3.52331 3.65695 3.86633 4.40828 5.16254 5.17821 5.60904 5.66068 5.83649 5.97527 6.00968 6.24144 6.32883 6.39532 6.49234 6.57977 6.62817 6.77609 6.92108 6.94969 7.19349 7.41132 7.51471 7.56140 7.69319 8.07177 8.23128 8.36024 8.55447 9.57174 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.008844 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.009810 B = 3165.386020 C = 4341.547019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.021 4.021 4 C -0.276 4.276 5 S 0.017 5.983 6 C -0.027 4.027 7 C -0.179 4.179 8 C 0.172 3.828 9 C -0.416 4.416 10 H 0.110 0.890 11 C 0.068 3.932 12 N -0.752 5.752 13 Si 0.916 3.084 14 H -0.252 1.252 15 H -0.268 1.268 16 H -0.266 1.266 17 C -0.187 4.187 18 C -0.013 4.013 19 C -0.172 4.172 20 C 0.283 3.717 21 N -0.500 5.500 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.147 0.853 28 H 0.293 0.707 29 H 0.126 0.874 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 -6.002 -1.940 7.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.032 4.032 4 C -0.409 4.409 5 S 0.280 5.720 6 C -0.145 4.145 7 C -0.186 4.186 8 C 0.166 3.834 9 C -0.442 4.442 10 H 0.128 0.872 11 C -0.156 4.156 12 N -0.373 5.373 13 Si 0.739 3.261 14 H -0.175 1.175 15 H -0.192 1.192 16 H -0.190 1.190 17 C -0.208 4.208 18 C -0.036 4.036 19 C -0.185 4.185 20 C -0.027 4.027 21 N -0.179 5.179 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.165 0.835 28 H 0.105 0.895 29 H 0.143 0.857 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.646 -3.249 -3.015 5.162 hybrid contribution -0.681 -2.137 1.158 2.524 sum -3.327 -5.386 -1.858 6.597 Atomic orbital electron populations 1.21745 0.95450 1.00834 1.02135 1.20578 0.95604 0.92631 1.02997 1.18424 0.97415 0.96262 0.91092 1.24393 1.17795 0.97627 1.01054 1.83778 1.72484 1.15064 1.00665 1.22174 1.01405 0.96766 0.94121 1.18908 1.12491 0.93147 0.94026 1.18551 0.85017 0.92051 0.87787 1.20288 1.21056 0.99281 1.03564 0.87210 1.26265 0.93773 1.00726 0.94875 1.69718 1.18619 1.37414 1.11553 0.86079 0.80330 0.79749 0.79980 1.17516 1.19232 1.19041 1.20624 1.08608 0.92179 0.99422 1.20174 0.94669 0.96124 0.92587 1.14569 1.23925 0.87480 0.92527 1.26063 0.91527 0.92741 0.92364 1.81056 1.15154 1.12840 1.08851 0.91571 0.93164 0.93384 0.88478 0.92636 0.83504 0.89534 0.85658 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.12 37.16 0.34 -1.83 16 2 C -0.08 -1.32 5.38 -27.88 -0.15 -1.47 16 3 C -0.02 -0.41 5.07 -105.84 -0.54 -0.94 16 4 C -0.28 -5.13 10.82 28.85 0.31 -4.81 16 5 S 0.02 0.33 22.98 -107.50 -2.47 -2.14 16 6 C -0.03 -0.59 6.33 -38.01 -0.24 -0.83 16 7 C -0.18 -3.94 6.01 -104.78 -0.63 -4.57 16 8 C 0.17 3.85 5.67 -104.29 -0.59 3.26 16 9 C -0.42 -8.69 7.17 -38.09 -0.27 -8.96 16 10 H 0.11 2.12 3.67 -52.49 -0.19 1.93 16 11 C 0.07 1.36 5.24 -17.28 -0.09 1.27 16 12 N -0.75 -15.79 11.11 55.57 0.62 -15.18 16 13 Si 0.92 14.90 29.57 -169.99 -5.03 9.87 16 14 H -0.25 -4.01 7.11 56.52 0.40 -3.60 16 15 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 16 H -0.27 -4.32 7.11 56.52 0.40 -3.91 16 17 C -0.19 -4.11 8.51 -39.47 -0.34 -4.45 16 18 C -0.01 -0.27 9.58 -39.79 -0.38 -0.65 16 19 C -0.17 -3.82 5.78 -106.29 -0.61 -4.44 16 20 C 0.28 6.31 15.01 -22.47 -0.34 5.97 16 21 N -0.50 -11.44 18.54 41.84 0.78 -10.66 16 22 H 0.07 1.08 6.88 -51.93 -0.36 0.73 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.10 1.74 5.52 -51.93 -0.29 1.45 16 26 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.29 5.51 8.29 -40.82 -0.34 5.17 16 29 H 0.13 2.74 6.54 -52.49 -0.34 2.40 16 30 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -23.99 274.63 -7.92 -31.91 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.42 Total: 4.51 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.53 Total: -22.45 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 1.39 Total: -25.84 kcal Atomic # 14 Polarization: 14.90 SS G_CDS: -5.03 Total: 9.87 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.47 Total: -2.14 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -23.99 -7.92 -31.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.955 kcal (2) G-P(sol) polarization free energy of solvation -23.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds