Wall clock time and date at job start Mon Mar 30 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47130 * 2 1 4 4 C 1.32721 * 122.09623 * 266.27959 * 3 2 1 5 5 S 1.75522 * 110.63272 * 179.89986 * 4 3 2 6 6 C 1.76028 * 91.49345 * 0.30612 * 5 4 3 7 7 C 1.39545 * 109.36978 * 359.83458 * 6 5 4 8 8 C 1.47928 * 118.04000 * 180.02562 * 7 6 5 9 9 C 1.40172 * 120.26090 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99930 * 326.22394 * 9 8 7 11 11 C 1.40279 * 120.00030 * 146.21724 * 9 8 7 12 12 N 1.30659 * 120.00170 * 350.40939 * 11 9 8 13 13 Si 1.86803 * 120.00147 * 170.41029 * 11 9 8 14 14 H 1.48503 * 109.46820 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.47073 * 119.99937 * 13 11 9 16 16 H 1.48504 * 109.47301 * 240.00378 * 13 11 9 17 17 C 1.40657 * 119.48581 * 0.02562 * 8 7 6 18 18 C 1.36002 * 120.49706 * 359.97438 * 17 8 7 19 19 C 1.39832 * 121.05222 * 0.02562 * 18 17 8 20 20 C 1.43202 * 119.47990 * 180.02562 * 19 18 17 21 21 N 7.23375 * 108.21607 * 13.55156 * 2 1 3 22 22 H 1.09002 * 109.47217 * 299.99828 * 1 2 3 23 23 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47276 * 59.99778 * 1 2 3 25 25 H 1.09001 * 109.47276 * 120.00221 * 2 1 3 26 26 H 1.09002 * 109.47217 * 240.00172 * 2 1 3 27 27 H 1.07994 * 124.68046 * 0.02660 * 4 3 2 28 28 H 0.97001 * 119.99813 * 179.97438 * 12 11 9 29 29 H 1.07999 * 119.75821 * 179.97438 * 17 8 7 30 30 H 1.08003 * 119.47081 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3362 2.0614 -1.1220 5 16 2.8855 3.6917 -0.7741 6 6 2.6856 3.4391 0.9565 7 6 2.2134 2.1459 1.1840 8 6 1.9757 1.7284 2.5831 9 6 1.5012 0.4399 2.8649 10 1 0.8202 -0.0460 2.1819 11 6 1.9109 -0.2183 4.0339 12 7 2.8722 0.2828 4.7632 13 14 1.0821 -1.8115 4.5481 14 1 0.0320 -2.1647 3.5592 15 1 2.0921 -2.8985 4.6064 16 1 0.4635 -1.6381 5.8870 17 6 2.2286 2.6349 3.6285 18 6 2.6887 3.8864 3.3607 19 6 2.9208 4.3036 2.0464 20 6 3.4059 5.6288 1.8031 21 7 3.7913 6.6799 1.6101 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.2546 1.6386 -2.1124 28 1 3.1552 -0.1722 5.5717 29 1 2.0562 2.3349 4.6516 30 1 2.8769 4.5691 4.1761 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396231224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:32 Heat of formation + Delta-G solvation = 40.024685 kcal Electronic energy + Delta-G solvation = -16106.878159 eV Core-core repulsion = 13571.220343 eV Total energy + Delta-G solvation = -2535.657815 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26567 -37.71127 -36.67717 -35.70294 -32.83261 -31.67993 -29.94316 -27.54534 -25.15239 -23.62965 -23.06076 -20.67118 -19.87083 -18.74890 -17.48339 -16.62447 -16.21870 -16.12281 -15.14661 -15.03788 -14.72794 -14.56089 -14.18074 -14.04092 -13.54180 -13.42432 -13.22093 -13.03304 -12.99339 -12.78613 -12.39783 -12.14716 -11.79119 -11.75070 -11.56398 -11.36541 -11.23197 -11.12537 -9.84791 -9.18392 -8.86112 -8.50298 -6.47271 0.17763 0.39411 0.88525 1.37307 1.44503 1.47486 1.62094 1.75148 1.89893 2.15821 2.24996 2.76593 3.46360 3.52025 4.20874 4.30687 4.43195 4.51214 4.73261 4.79109 4.90178 4.97915 5.03496 5.20234 5.22469 5.29287 5.38009 5.55598 5.66367 5.83721 5.93101 5.96076 6.06390 6.45366 6.60786 6.70161 6.82787 8.06111 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.008844 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.009810 B = 3165.386020 C = 4341.547019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.038 4.038 4 C -0.263 4.263 5 S 0.018 5.982 6 C -0.051 4.051 7 C -0.194 4.194 8 C 0.147 3.853 9 C -0.418 4.418 10 H 0.125 0.875 11 C 0.035 3.965 12 N -0.778 5.778 13 Si 0.982 3.018 14 H -0.241 1.241 15 H -0.266 1.266 16 H -0.264 1.264 17 C -0.202 4.202 18 C -0.014 4.014 19 C -0.195 4.195 20 C 0.291 3.709 21 N -0.518 5.518 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.180 0.820 28 H 0.302 0.698 29 H 0.120 0.880 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -8.175 -2.696 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.049 4.049 4 C -0.395 4.395 5 S 0.281 5.719 6 C -0.169 4.169 7 C -0.201 4.201 8 C 0.140 3.860 9 C -0.444 4.444 10 H 0.142 0.858 11 C -0.188 4.188 12 N -0.400 5.400 13 Si 0.801 3.199 14 H -0.164 1.164 15 H -0.190 1.190 16 H -0.189 1.189 17 C -0.224 4.224 18 C -0.036 4.036 19 C -0.208 4.208 20 C -0.018 4.018 21 N -0.198 5.198 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.197 0.803 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.569 -5.403 -3.778 7.497 hybrid contribution -0.382 -1.537 1.387 2.105 sum -3.951 -6.940 -2.391 8.336 Atomic orbital electron populations 1.21711 0.94120 1.02302 1.01594 1.20604 0.96679 0.90719 1.03524 1.18716 0.97957 0.97782 0.90408 1.24778 1.16085 0.96431 1.02253 1.83714 1.72406 1.16493 0.99245 1.22462 1.01975 0.97194 0.95316 1.19264 1.12535 0.93496 0.94823 1.18879 0.85876 0.92985 0.88229 1.20652 1.20526 0.98832 1.04343 0.85776 1.27099 0.93811 1.03579 0.94282 1.69757 1.19325 1.38855 1.12014 0.85103 0.79452 0.75652 0.79690 1.16375 1.19016 1.18878 1.20636 1.09811 0.92668 0.99246 1.20320 0.94171 0.96239 0.92898 1.14681 1.25460 0.87580 0.93079 1.26113 0.91116 0.92653 0.91909 1.81040 1.16176 1.13228 1.09379 0.93489 0.90663 0.92551 0.89814 0.90180 0.80276 0.88605 0.86176 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.12 71.98 0.66 -3.16 16 2 C -0.08 -2.35 5.38 29.85 0.16 -2.19 16 3 C -0.04 -1.42 5.07 -20.61 -0.10 -1.53 16 4 C -0.26 -9.19 10.82 66.65 0.72 -8.47 16 5 S 0.02 0.70 22.98 -56.49 -1.30 -0.59 16 6 C -0.05 -2.31 6.33 23.29 0.15 -2.16 16 7 C -0.19 -8.54 6.01 -19.96 -0.12 -8.66 16 8 C 0.15 6.62 5.67 -19.65 -0.11 6.51 16 9 C -0.42 -17.20 7.17 23.24 0.17 -17.03 16 10 H 0.12 4.62 3.67 -2.91 -0.01 4.61 16 11 C 0.03 1.35 5.24 85.36 0.45 1.79 16 12 N -0.78 -32.45 11.11 21.88 0.24 -32.21 16 13 Si 0.98 28.83 29.57 68.60 2.03 30.86 16 14 H -0.24 -6.63 7.11 99.48 0.71 -5.92 16 15 H -0.27 -7.71 7.11 99.48 0.71 -7.00 16 16 H -0.26 -7.68 7.11 99.48 0.71 -6.97 16 17 C -0.20 -9.09 8.51 22.34 0.19 -8.90 16 18 C -0.01 -0.59 9.58 22.14 0.21 -0.38 16 19 C -0.20 -8.84 5.78 -20.95 -0.12 -8.96 16 20 C 0.29 13.18 15.01 88.33 1.33 14.51 16 21 N -0.52 -23.96 18.54 19.00 0.35 -23.60 16 22 H 0.05 1.45 6.88 -2.39 -0.02 1.43 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 2.83 5.52 -2.39 -0.01 2.81 16 26 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 27 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 28 H 0.30 11.20 8.29 -92.71 -0.77 10.43 16 29 H 0.12 5.40 6.54 -2.91 -0.02 5.38 16 30 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -50.84 274.63 6.08 -44.75 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.19 Total: 19.44 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 3.57 Total: -38.63 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.60 Total: -55.82 kcal Atomic # 14 Polarization: 28.83 SS G_CDS: 2.03 Total: 30.86 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.30 Total: -0.59 kcal Total: -50.84 6.08 -44.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396231224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.778 kcal (2) G-P(sol) polarization free energy of solvation -50.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds