Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.36817 * 123.07964 * 250.29414 * 3 2 1 5 5 C 1.46211 * 124.55992 * 0.02562 * 4 3 2 6 6 O 1.21357 * 120.00297 * 359.97438 * 5 4 3 7 7 S 1.75224 * 110.86826 * 180.02562 * 4 3 2 8 8 C 1.75845 * 92.58336 * 0.02562 * 7 4 3 9 9 C 1.39501 * 110.50968 * 359.72390 * 8 7 4 10 10 C 1.41410 * 119.05667 * 179.69790 * 9 8 7 11 11 C 1.37711 * 120.96813 * 0.58523 * 10 9 8 12 12 C 1.37945 * 120.73568 * 359.70564 * 11 10 9 13 13 C 1.40288 * 119.92359 * 359.97438 * 12 11 10 14 14 C 1.40823 * 120.07885 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99304 * 205.05439 * 14 13 12 16 16 C 1.40031 * 120.00084 * 25.05752 * 14 13 12 17 17 N 1.30799 * 120.00138 * 17.89586 * 16 14 13 18 18 Si 1.86806 * 119.99814 * 197.89138 * 16 14 13 19 19 H 1.48497 * 109.46937 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46819 * 119.99961 * 18 16 14 21 21 H 1.48499 * 109.47238 * 240.00170 * 18 16 14 22 22 H 1.08005 * 119.99381 * 179.97438 * 5 4 3 23 23 H 1.07995 * 119.51561 * 180.29109 * 10 9 8 24 24 H 1.08005 * 119.63090 * 179.72929 * 11 10 9 25 25 H 1.08005 * 120.04311 * 179.97438 * 12 11 10 26 26 H 0.97001 * 119.99929 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3146 0.3875 1.0793 5 6 2.7582 0.8427 2.3524 6 8 1.5553 0.8966 2.5044 7 16 5.0272 0.2640 0.7301 8 6 4.7334 -0.3197 -0.9024 9 6 3.3635 -0.4152 -1.1482 10 6 2.9226 -0.8625 -2.4151 11 6 3.8236 -1.2130 -3.3958 12 6 5.1816 -1.1304 -3.1678 13 6 5.6567 -0.6847 -1.9253 14 6 7.0423 -0.5997 -1.6887 15 1 7.4223 -0.6584 -0.6795 16 6 7.9272 -0.4389 -2.7620 17 7 7.4828 -0.0217 -3.9193 18 14 9.7426 -0.8201 -2.5408 19 1 9.9872 -1.2722 -1.1477 20 1 10.1417 -1.8932 -3.4863 21 1 10.5417 0.4017 -2.8128 22 1 3.4177 1.1310 3.1577 23 1 1.8638 -0.9347 -2.6150 24 1 3.4630 -1.5560 -4.3544 25 1 5.8783 -1.4086 -3.9448 26 1 8.0959 0.0900 -4.6626 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396276280.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = 25.967343 kcal Electronic energy + Delta-G solvation = -15320.899587 eV Core-core repulsion = 12648.799105 eV Total energy + Delta-G solvation = -2672.100482 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22257 -38.11744 -36.19304 -34.66641 -33.25650 -30.28831 -29.03485 -25.99109 -25.34137 -22.52212 -21.27835 -20.20878 -18.23904 -17.05646 -16.43911 -15.86829 -15.34380 -14.76313 -14.40790 -14.15441 -13.83188 -13.26445 -13.18224 -12.97895 -12.44058 -12.31877 -12.18940 -11.71775 -11.37132 -11.25181 -10.86688 -10.60327 -10.33550 -10.20036 -9.83334 -9.68922 -9.51778 -8.59098 -7.70855 -7.20012 -7.03801 -4.70447 0.42547 1.99291 2.34899 2.45326 2.64592 2.68760 2.90028 2.94448 2.97749 3.19046 3.66901 3.88960 4.28710 4.31413 4.46318 5.18702 5.32057 5.59962 6.03055 6.12320 6.19804 6.55736 6.72964 6.79968 6.96943 7.23468 7.40180 7.50536 7.66590 7.79422 7.93237 8.18741 8.40438 8.46658 9.78862 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.030070 B = 0.006758 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.925103 B = 4141.973959 C = 4992.030571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.282 3.718 3 C 0.039 3.961 4 C -0.261 4.261 5 C 0.405 3.595 6 O -0.455 6.455 7 S 0.165 5.835 8 C -0.202 4.202 9 C -0.031 4.031 10 C -0.212 4.212 11 C -0.075 4.075 12 C -0.164 4.164 13 C 0.144 3.856 14 C -0.449 4.449 15 H 0.085 0.915 16 C 0.078 3.922 17 N -0.772 5.772 18 Si 0.912 3.088 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.271 1.271 22 H 0.115 0.885 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.129 0.871 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -0.080 4.394 5.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.035 4.035 3 C 0.016 3.984 4 C -0.383 4.383 5 C 0.263 3.737 6 O -0.328 6.328 7 S 0.436 5.564 8 C -0.318 4.318 9 C -0.038 4.038 10 C -0.235 4.235 11 C -0.094 4.094 12 C -0.188 4.188 13 C 0.138 3.862 14 C -0.477 4.477 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.395 5.395 18 Si 0.735 3.265 19 H -0.180 1.180 20 H -0.193 1.193 21 H -0.196 1.196 22 H 0.131 0.869 23 H 0.114 0.886 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.151 0.360 5.159 5.602 hybrid contribution 0.133 -0.391 -1.019 1.099 sum 2.284 -0.030 4.141 4.729 Atomic orbital electron populations 1.81072 1.11883 1.08337 1.08559 1.24983 0.91962 0.93751 0.92756 1.16477 0.84841 1.02755 0.94366 1.25255 1.00687 1.12303 1.00021 1.23197 0.90217 0.72736 0.87568 1.90592 1.18750 1.41092 1.82349 1.83372 0.97540 1.66472 1.09051 1.22780 0.95534 1.14732 0.98771 1.18355 0.90417 1.02007 0.93000 1.20145 0.97762 1.13000 0.92582 1.20559 0.93813 0.98090 0.96912 1.21205 0.93829 1.05197 0.98557 1.16997 0.91640 0.88219 0.89333 1.19586 0.90652 1.42567 0.94871 0.89659 1.25969 1.02254 0.91824 0.94326 1.69787 1.38412 1.28695 1.02610 0.86170 0.80701 0.79264 0.80319 1.17959 1.19302 1.19577 0.86878 0.88632 0.88128 0.85374 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.86 18.54 41.84 0.78 -8.08 15 2 C 0.28 5.70 13.42 -22.47 -0.30 5.39 15 3 C 0.04 0.76 5.89 -105.49 -0.62 0.13 15 4 C -0.26 -4.40 6.37 -36.90 -0.23 -4.63 15 5 C 0.41 5.82 11.67 33.93 0.40 6.21 15 6 O -0.45 -8.17 15.96 5.49 0.09 -8.09 15 7 S 0.16 2.80 22.69 -107.50 -2.44 0.36 15 8 C -0.20 -4.31 6.36 -37.45 -0.24 -4.55 15 9 C -0.03 -0.66 6.00 -105.22 -0.63 -1.29 15 10 C -0.21 -4.44 9.83 -38.57 -0.38 -4.82 15 11 C -0.07 -1.56 9.97 -39.88 -0.40 -1.95 15 12 C -0.16 -3.72 8.67 -38.92 -0.34 -4.06 15 13 C 0.14 3.32 5.60 -106.49 -0.60 2.73 15 14 C -0.45 -10.15 8.81 -37.93 -0.33 -10.48 15 15 H 0.09 1.84 7.72 -52.49 -0.41 1.43 15 16 C 0.08 1.68 5.12 -17.32 -0.09 1.59 15 17 N -0.77 -17.28 10.98 55.55 0.61 -16.67 15 18 Si 0.91 16.14 29.60 -169.99 -5.03 11.11 15 19 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 20 H -0.27 -4.71 7.11 56.52 0.40 -4.30 15 21 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 22 H 0.12 1.07 8.06 -52.48 -0.42 0.65 15 23 H 0.10 1.88 8.02 -52.49 -0.42 1.46 15 24 H 0.10 1.83 8.06 -52.48 -0.42 1.40 15 25 H 0.13 2.95 6.16 -52.48 -0.32 2.63 15 26 H 0.29 5.80 8.30 -40.82 -0.34 5.46 15 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -25.95 263.09 -6.93 -32.87 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -1.13 Total: 0.27 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.76 Total: -15.73 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 1.39 Total: -24.76 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.44 Total: 0.36 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.95 -6.93 -32.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396276280.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.841 kcal (2) G-P(sol) polarization free energy of solvation -25.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds