Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.36817 * 123.07964 * 250.29414 * 3 2 1 5 5 C 1.46211 * 124.55992 * 0.02562 * 4 3 2 6 6 O 1.21357 * 120.00297 * 359.97438 * 5 4 3 7 7 S 1.75224 * 110.86826 * 180.02562 * 4 3 2 8 8 C 1.75845 * 92.58336 * 0.02562 * 7 4 3 9 9 C 1.39501 * 110.50968 * 359.72390 * 8 7 4 10 10 C 1.41410 * 119.05667 * 179.69790 * 9 8 7 11 11 C 1.37711 * 120.96813 * 0.58523 * 10 9 8 12 12 C 1.37945 * 120.73568 * 359.70564 * 11 10 9 13 13 C 1.40288 * 119.92359 * 359.97438 * 12 11 10 14 14 C 1.40823 * 120.07885 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99304 * 205.05439 * 14 13 12 16 16 C 1.40031 * 120.00084 * 25.05752 * 14 13 12 17 17 N 1.30799 * 120.00138 * 17.89586 * 16 14 13 18 18 Si 1.86806 * 119.99814 * 197.89138 * 16 14 13 19 19 H 1.48497 * 109.46937 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46819 * 119.99961 * 18 16 14 21 21 H 1.48499 * 109.47238 * 240.00170 * 18 16 14 22 22 H 1.08005 * 119.99381 * 179.97438 * 5 4 3 23 23 H 1.07995 * 119.51561 * 180.29109 * 10 9 8 24 24 H 1.08005 * 119.63090 * 179.72929 * 11 10 9 25 25 H 1.08005 * 120.04311 * 179.97438 * 12 11 10 26 26 H 0.97001 * 119.99929 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3146 0.3875 1.0793 5 6 2.7582 0.8427 2.3524 6 8 1.5553 0.8966 2.5044 7 16 5.0272 0.2640 0.7301 8 6 4.7334 -0.3197 -0.9024 9 6 3.3635 -0.4152 -1.1482 10 6 2.9226 -0.8625 -2.4151 11 6 3.8236 -1.2130 -3.3958 12 6 5.1816 -1.1304 -3.1678 13 6 5.6567 -0.6847 -1.9253 14 6 7.0423 -0.5997 -1.6887 15 1 7.4223 -0.6584 -0.6795 16 6 7.9272 -0.4389 -2.7620 17 7 7.4828 -0.0217 -3.9193 18 14 9.7426 -0.8201 -2.5408 19 1 9.9872 -1.2722 -1.1477 20 1 10.1417 -1.8932 -3.4863 21 1 10.5417 0.4017 -2.8128 22 1 3.4177 1.1310 3.1577 23 1 1.8638 -0.9347 -2.6150 24 1 3.4630 -1.5560 -4.3544 25 1 5.8783 -1.4086 -3.9448 26 1 8.0959 0.0900 -4.6626 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396276280.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = 13.254478 kcal Electronic energy + Delta-G solvation = -15321.450858 eV Core-core repulsion = 12648.799105 eV Total energy + Delta-G solvation = -2672.651753 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60284 -39.61913 -37.75931 -36.25202 -34.82960 -31.93452 -30.54665 -27.58069 -26.83453 -24.02012 -22.87870 -21.67827 -19.77586 -18.49911 -17.96579 -17.28966 -16.86491 -16.26755 -15.79870 -15.59493 -15.41171 -14.75300 -14.73682 -14.50680 -14.01196 -13.91322 -13.75118 -13.25744 -12.91206 -12.75842 -12.35764 -12.07012 -11.92370 -11.73443 -11.28373 -11.11437 -11.07158 -10.16184 -9.30312 -8.79380 -8.56890 -6.38967 -0.98912 0.56362 0.72140 0.91954 1.10656 1.38607 1.45401 1.53449 1.59776 1.62787 2.19812 2.33564 2.70751 2.96333 3.12116 3.51769 4.08305 4.18162 4.53144 4.56343 4.68139 4.91819 5.13442 5.17457 5.35538 5.59425 5.84248 6.02136 6.11858 6.24218 6.38158 6.52443 6.73788 6.81315 8.21155 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.030070 B = 0.006758 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.925103 B = 4141.973959 C = 4992.030571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.292 3.708 3 C -0.001 4.001 4 C -0.240 4.240 5 C 0.416 3.584 6 O -0.486 6.486 7 S 0.244 5.756 8 C -0.239 4.239 9 C -0.036 4.036 10 C -0.230 4.230 11 C -0.074 4.074 12 C -0.195 4.195 13 C 0.123 3.877 14 C -0.472 4.472 15 H 0.092 0.908 16 C 0.042 3.958 17 N -0.802 5.802 18 Si 0.979 3.021 19 H -0.251 1.251 20 H -0.267 1.267 21 H -0.266 1.266 22 H 0.184 0.816 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 0.449 6.475 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.023 4.023 3 C -0.024 4.024 4 C -0.362 4.362 5 C 0.274 3.726 6 O -0.360 6.360 7 S 0.516 5.484 8 C -0.355 4.355 9 C -0.042 4.042 10 C -0.253 4.253 11 C -0.093 4.093 12 C -0.218 4.218 13 C 0.118 3.882 14 C -0.499 4.499 15 H 0.110 0.890 16 C -0.177 4.177 17 N -0.426 5.426 18 Si 0.800 3.200 19 H -0.174 1.174 20 H -0.191 1.191 21 H -0.191 1.191 22 H 0.200 0.800 23 H 0.119 0.881 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.572 0.888 7.233 8.116 hybrid contribution -0.305 -0.505 -1.572 1.679 sum 3.267 0.383 5.662 6.548 Atomic orbital electron populations 1.81063 1.12476 1.09686 1.09322 1.25116 0.92118 0.92972 0.92130 1.16416 0.84498 1.06354 0.95136 1.25956 1.00927 1.08842 1.00476 1.24154 0.90245 0.70883 0.87277 1.90612 1.20767 1.42144 1.82494 1.83000 0.96354 1.64015 1.05043 1.23117 0.95561 1.15493 1.01312 1.18574 0.90860 1.01332 0.93466 1.20321 0.98064 1.13767 0.93108 1.20755 0.93322 0.97408 0.97788 1.21177 0.94330 1.07434 0.98887 1.17294 0.92463 0.88424 0.90053 1.19849 0.90923 1.43535 0.95628 0.89013 1.26760 1.06105 0.91043 0.93744 1.69835 1.40094 1.29190 1.03463 0.85171 0.75517 0.79005 0.80339 1.17388 1.19125 1.19110 0.80042 0.88085 0.86211 0.86649 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.82 18.54 19.00 0.35 -18.47 15 2 C 0.29 11.73 13.42 88.33 1.19 12.91 15 3 C 0.00 -0.03 5.89 -20.43 -0.12 -0.15 15 4 C -0.24 -7.38 6.37 24.01 0.15 -7.23 15 5 C 0.42 10.18 11.67 69.89 0.82 10.99 15 6 O -0.49 -16.11 15.96 -3.27 -0.05 -16.16 15 7 S 0.24 7.57 22.69 -56.49 -1.28 6.29 15 8 C -0.24 -10.08 6.36 23.65 0.15 -9.93 15 9 C -0.04 -1.50 6.00 -20.25 -0.12 -1.62 15 10 C -0.23 -9.84 9.83 22.93 0.23 -9.61 15 11 C -0.07 -3.16 9.97 22.08 0.22 -2.94 15 12 C -0.19 -9.12 8.67 22.70 0.20 -8.93 15 13 C 0.12 5.76 5.60 -21.07 -0.12 5.64 15 14 C -0.47 -21.26 8.81 23.34 0.21 -21.05 15 15 H 0.09 3.85 7.72 -2.91 -0.02 3.83 15 16 C 0.04 1.81 5.12 85.28 0.44 2.25 15 17 N -0.80 -36.40 10.98 21.84 0.24 -36.16 15 18 Si 0.98 32.30 29.60 68.60 2.03 34.33 15 19 H -0.25 -7.97 7.11 99.48 0.71 -7.26 15 20 H -0.27 -8.65 7.11 99.48 0.71 -7.94 15 21 H -0.27 -8.54 7.11 99.48 0.71 -7.83 15 22 H 0.18 2.18 8.06 -2.91 -0.02 2.15 15 23 H 0.10 4.08 8.02 -2.91 -0.02 4.05 15 24 H 0.12 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.12 5.57 6.16 -2.91 -0.02 5.55 15 26 H 0.29 11.99 8.30 -92.71 -0.77 11.22 15 Total: -1.00 -57.37 263.09 5.76 -51.61 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.24 Total: 8.22 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.23 Total: -29.67 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.59 Total: -54.63 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.05 Total: -16.16 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 2.03 Total: 34.33 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -1.28 Total: 6.29 kcal Total: -57.37 5.76 -51.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396276280.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.865 kcal (2) G-P(sol) polarization free energy of solvation -57.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds