Wall clock time and date at job start Mon Mar 30 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38353 * 119.82466 * 61.07748 * 3 2 1 5 5 C 1.40726 * 119.78517 * 179.97438 * 4 3 2 6 6 C 1.41319 * 120.02957 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99733 * 150.09829 * 6 5 4 8 8 C 1.39872 * 120.00129 * 330.10668 * 6 5 4 9 9 N 1.30877 * 120.00263 * 161.71662 * 8 6 5 10 10 Si 1.86803 * 119.99857 * 341.70852 * 8 6 5 11 11 H 1.48504 * 109.47014 * 95.42003 * 10 8 6 12 12 H 1.48495 * 109.47347 * 215.42257 * 10 8 6 13 13 H 1.48501 * 109.47064 * 335.42328 * 10 8 6 14 14 C 1.40195 * 119.94472 * 0.04280 * 5 4 3 15 15 C 1.39918 * 120.43824 * 359.96837 * 14 5 4 16 16 C 1.46751 * 129.37764 * 180.02562 * 15 14 5 17 17 C 1.41604 * 123.18052 * 359.96315 * 16 15 14 18 18 O 1.21424 * 120.00002 * 179.97438 * 17 16 15 19 19 C 1.35275 * 113.63675 * 179.97438 * 16 15 14 20 20 S 1.69961 * 112.16913 * 359.97438 * 19 16 15 21 21 C 1.39706 * 119.56855 * 0.02562 * 15 14 5 22 22 H 1.07998 * 120.10610 * 0.02562 * 4 3 2 23 23 H 0.97000 * 119.99802 * 179.97438 * 9 8 6 24 24 H 1.07998 * 119.78364 * 180.25153 * 14 5 4 25 25 H 1.07996 * 120.00040 * 0.02562 * 17 16 15 26 26 H 1.08000 * 123.91705 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2564 -0.5795 -1.0506 5 6 4.6637 -0.5780 -1.0500 6 6 5.3720 -1.1686 -2.1207 7 1 6.3439 -0.7892 -2.3998 8 6 4.8143 -2.2445 -2.8192 9 7 5.2704 -2.5626 -4.0040 10 14 3.4186 -3.2276 -2.0609 11 1 2.1194 -2.7044 -2.5545 12 1 3.5544 -4.6560 -2.4433 13 1 3.4724 -3.1038 -0.5820 14 6 5.3624 0.0098 0.0139 15 6 4.6698 0.5973 1.0783 16 6 5.1946 1.2604 2.2776 17 6 6.5785 1.4056 2.5400 18 8 6.9492 1.9654 3.5517 19 6 4.2312 1.7195 3.1089 20 16 2.6695 1.3954 2.5218 21 6 3.2727 0.5953 1.0766 22 1 2.7155 -1.0314 -1.8688 23 1 4.8839 -3.3089 -4.4882 24 1 6.4423 0.0131 0.0097 25 1 7.3043 1.0191 1.8399 26 1 4.4313 2.2326 4.0380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396277991.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:44 Heat of formation + Delta-G solvation = 13.864115 kcal Electronic energy + Delta-G solvation = -15391.774369 eV Core-core repulsion = 12719.149052 eV Total energy + Delta-G solvation = -2672.625317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82912 -39.69649 -37.72151 -36.55278 -34.95048 -32.57457 -30.71981 -27.84211 -26.64570 -24.65523 -23.12459 -21.11398 -20.07460 -18.94679 -17.87553 -17.27412 -16.96790 -16.70041 -15.97530 -15.57742 -15.52423 -15.03850 -14.82307 -14.63724 -14.08400 -13.86991 -13.78723 -13.65375 -13.29952 -12.78965 -12.69461 -12.41072 -11.89233 -11.74358 -11.65052 -11.13088 -10.72371 -10.38070 -9.51286 -8.97066 -8.78781 -6.52346 -0.57631 -0.01023 0.50610 0.54883 0.99457 1.22327 1.34151 1.44771 1.45941 1.75953 2.04243 2.22401 2.55042 2.81510 3.32251 3.64217 3.78754 4.10212 4.23365 4.50501 4.55220 4.80108 4.94236 4.99392 5.04614 5.22928 5.46420 5.67207 5.91651 6.19807 6.29955 6.49709 6.56752 6.70042 8.09357 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.008436 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.475837 B = 3318.147529 C = 4486.141683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.270 3.730 3 C 0.034 3.966 4 C -0.152 4.152 5 C 0.084 3.916 6 C -0.454 4.454 7 H 0.083 0.917 8 C 0.060 3.940 9 N -0.826 5.826 10 Si 0.929 3.071 11 H -0.264 1.264 12 H -0.272 1.272 13 H -0.241 1.241 14 C -0.164 4.164 15 C -0.001 4.001 16 C -0.223 4.223 17 C 0.410 3.590 18 O -0.511 6.511 19 C -0.132 4.132 20 S 0.186 5.814 21 C -0.243 4.243 22 H 0.116 0.884 23 H 0.298 0.702 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 3.136 8.237 8.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.044 4.044 3 C 0.026 3.974 4 C -0.175 4.175 5 C 0.080 3.920 6 C -0.482 4.482 7 H 0.101 0.899 8 C -0.158 4.158 9 N -0.450 5.450 10 Si 0.753 3.247 11 H -0.190 1.190 12 H -0.198 1.198 13 H -0.164 1.164 14 C -0.187 4.187 15 C -0.007 4.007 16 C -0.240 4.240 17 C 0.272 3.728 18 O -0.390 6.390 19 C -0.269 4.269 20 S 0.453 5.547 21 C -0.360 4.360 22 H 0.134 0.866 23 H 0.108 0.892 24 H 0.155 0.845 25 H 0.145 0.855 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.925 3.593 9.072 10.518 hybrid contribution 1.260 -0.937 -0.991 1.857 sum -2.665 2.656 8.081 8.914 Atomic orbital electron populations 1.81134 1.12265 1.09974 1.08936 1.26055 0.92953 0.92734 0.92693 1.15014 0.82601 1.03801 0.95963 1.21278 0.95112 1.03548 0.97586 1.17436 0.90370 0.92118 0.92111 1.19474 1.05075 1.13371 1.10324 0.89879 1.26611 0.98175 0.97739 0.93282 1.69699 1.39427 1.25489 1.10391 0.86020 0.78688 0.78084 0.81946 1.19012 1.19752 1.16358 1.21031 0.99726 1.05658 0.92263 1.18711 0.90701 0.97006 0.94273 1.19896 0.98001 1.09185 0.96944 1.22442 0.89855 0.74140 0.86326 1.90515 1.83840 1.35739 1.28932 1.25785 0.97824 0.99793 1.03543 1.82645 1.04303 1.55001 1.12761 1.22247 0.96704 1.15181 1.01840 0.86626 0.89156 0.84481 0.85456 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.91 18.54 19.00 0.35 -16.56 15 2 C 0.27 9.96 15.03 88.33 1.33 11.28 15 3 C 0.03 1.25 5.76 -21.14 -0.12 1.13 15 4 C -0.15 -6.11 6.81 22.91 0.16 -5.95 15 5 C 0.08 3.45 5.09 -21.44 -0.11 3.34 15 6 C -0.45 -20.75 9.55 23.42 0.22 -20.52 15 7 H 0.08 4.00 8.06 -2.91 -0.02 3.98 15 8 C 0.06 2.75 5.40 85.23 0.46 3.21 15 9 N -0.83 -39.33 13.93 21.81 0.30 -39.03 15 10 Si 0.93 36.60 24.51 68.60 1.68 38.28 15 11 H -0.26 -10.26 6.70 99.48 0.67 -9.59 15 12 H -0.27 -10.23 7.11 99.48 0.71 -9.53 15 13 H -0.24 -9.45 6.87 99.48 0.68 -8.76 15 14 C -0.16 -5.89 9.56 23.15 0.22 -5.67 15 15 C 0.00 -0.05 6.01 -20.29 -0.12 -0.17 15 16 C -0.22 -6.43 5.82 -20.91 -0.12 -6.55 15 17 C 0.41 10.91 11.19 68.65 0.77 11.68 15 18 O -0.51 -16.02 17.35 -3.48 -0.06 -16.08 15 19 C -0.13 -3.41 10.30 67.14 0.69 -2.72 15 20 S 0.19 5.06 22.64 -56.49 -1.28 3.79 15 21 C -0.24 -8.33 6.35 23.49 0.15 -8.18 15 22 H 0.12 4.72 4.73 -2.91 -0.01 4.70 15 23 H 0.30 12.83 8.30 -92.71 -0.77 12.06 15 24 H 0.14 4.30 7.55 -2.91 -0.02 4.28 15 25 H 0.13 2.67 7.52 -2.91 -0.02 2.65 15 26 H 0.19 4.12 7.90 -2.91 -0.02 4.10 15 Total: -1.00 -50.54 258.58 5.71 -44.83 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.18 Total: 3.88 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.52 Total: -19.12 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.66 Total: -55.58 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.06 Total: -16.08 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 1.68 Total: 38.28 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.28 Total: 3.79 kcal Total: -50.54 5.71 -44.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396277991.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.694 kcal (2) G-P(sol) polarization free energy of solvation -50.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds