Wall clock time and date at job start Mon Mar 30 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38594 * 120.48492 * 280.71684 * 3 2 1 5 5 C 1.39951 * 120.71869 * 180.26079 * 4 3 2 6 6 S 1.76006 * 129.48693 * 179.73374 * 5 4 3 7 7 C 1.69918 * 93.20622 * 179.97438 * 6 5 4 8 8 C 1.35362 * 112.20966 * 0.02562 * 7 6 5 9 9 C 1.41632 * 123.16253 * 179.97438 * 8 7 6 10 10 O 1.21416 * 120.00125 * 179.97438 * 9 8 7 11 11 C 1.40016 * 120.61320 * 359.72005 * 5 4 3 12 12 C 1.39956 * 120.26293 * 0.02562 * 11 5 4 13 13 C 1.40029 * 120.41245 * 359.97438 * 12 11 5 14 14 C 1.40704 * 120.51534 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00246 * 205.01935 * 14 13 12 16 16 C 1.40168 * 119.99792 * 25.02885 * 14 13 12 17 17 N 1.30716 * 120.00278 * 26.67210 * 16 14 13 18 18 Si 1.86806 * 119.99891 * 206.66765 * 16 14 13 19 19 H 1.48491 * 109.47259 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47095 * 300.00239 * 18 16 14 21 21 H 1.48502 * 109.46998 * 59.99785 * 18 16 14 22 22 H 1.07998 * 119.64008 * 359.95437 * 4 3 2 23 23 H 1.07998 * 123.89228 * 179.97438 * 7 6 5 24 24 H 1.08007 * 120.00291 * 359.97438 * 9 8 7 25 25 H 1.08006 * 119.78851 * 180.02562 * 12 11 5 26 26 H 0.96990 * 120.00003 * 5.78423 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2712 -0.2211 1.1735 5 6 4.6707 -0.2162 1.1802 6 16 5.7845 -0.4617 2.5207 7 6 7.1582 -0.2730 1.5387 8 6 6.8344 -0.0327 0.2465 9 6 7.8003 0.1617 -0.7710 10 8 7.4452 0.3733 -1.9126 11 6 5.3885 0.0074 -0.0010 12 6 4.7123 0.2298 -1.2060 13 6 3.3125 0.2306 -1.2436 14 6 2.6304 0.4545 -2.4537 15 1 1.6257 0.8503 -2.4421 16 6 3.2550 0.1636 -3.6744 17 7 4.1866 -0.7516 -3.7302 18 14 2.7559 1.0838 -5.2216 19 1 3.5603 0.5945 -6.3698 20 1 1.3142 0.8521 -5.4919 21 1 2.9967 2.5370 -5.0326 22 1 2.7333 -0.3948 2.0938 23 1 8.1727 -0.3365 1.9036 24 1 8.8527 0.1218 -0.5314 25 1 5.2737 0.4010 -2.1127 26 1 4.3874 -1.2876 -2.9472 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396278022.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:31 Heat of formation + Delta-G solvation = 18.418407 kcal Electronic energy + Delta-G solvation = -15611.629333 eV Core-core repulsion = 12939.201505 eV Total energy + Delta-G solvation = -2672.427829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21684 -37.71159 -35.70277 -34.98229 -33.43002 -29.75491 -29.27285 -26.04496 -24.82748 -23.00193 -21.41660 -19.52009 -18.35626 -17.51058 -16.60872 -15.99492 -14.87366 -14.58551 -14.22707 -13.97557 -13.62172 -13.11915 -13.05824 -12.66190 -12.53511 -12.16722 -11.98917 -11.84990 -11.46607 -11.31145 -10.92422 -10.53458 -10.26320 -10.20598 -9.77702 -9.31756 -9.13939 -8.74656 -7.84260 -7.54374 -7.22416 -4.81952 0.82168 1.99806 2.07678 2.33480 2.56674 3.02859 3.07436 3.25858 3.37782 3.65612 3.81148 4.03935 4.31648 4.77045 5.02018 5.09533 5.15039 5.61360 5.82555 5.98000 6.07953 6.46288 6.53287 6.87910 6.94587 7.17723 7.26881 7.43176 7.67628 7.77864 7.99838 8.20823 8.38189 8.53223 9.65586 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.009212 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.021330 B = 3038.630017 C = 4458.121054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.296 3.704 3 C -0.146 4.146 4 C 0.022 3.978 5 C -0.288 4.288 6 S 0.122 5.878 7 C -0.157 4.157 8 C -0.208 4.208 9 C 0.385 3.615 10 O -0.451 6.451 11 C 0.016 3.984 12 C -0.196 4.196 13 C 0.122 3.878 14 C -0.467 4.467 15 H 0.087 0.913 16 C 0.034 3.966 17 N -0.744 5.744 18 Si 1.067 2.933 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.268 1.268 22 H 0.107 0.893 23 H 0.165 0.835 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 0.441 6.272 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.015 4.015 3 C -0.153 4.153 4 C -0.003 4.003 5 C -0.402 4.402 6 S 0.388 5.612 7 C -0.295 4.295 8 C -0.226 4.226 9 C 0.242 3.758 10 O -0.326 6.326 11 C 0.011 3.989 12 C -0.218 4.218 13 C 0.116 3.884 14 C -0.493 4.493 15 H 0.105 0.895 16 C -0.194 4.194 17 N -0.364 5.364 18 Si 0.888 3.112 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.193 1.193 22 H 0.125 0.875 23 H 0.182 0.818 24 H 0.103 0.897 25 H 0.156 0.844 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.921 0.362 5.633 8.180 hybrid contribution 0.507 0.006 0.504 0.715 sum 6.428 0.368 6.137 8.895 Atomic orbital electron populations 1.81052 1.12431 1.13527 1.09693 1.25585 0.92496 0.91716 0.91664 1.16707 0.83438 1.19620 0.95500 1.19854 0.90520 0.94372 0.95574 1.21542 0.96270 1.26621 0.95743 1.82295 0.94068 1.73824 1.11031 1.25335 1.04336 1.01888 0.97928 1.20072 0.95466 1.11923 0.95187 1.22114 0.93359 0.73050 0.87252 1.90590 1.84769 1.34237 1.23031 1.18623 0.89289 0.97550 0.93445 1.21140 0.92778 1.11109 0.96759 1.18251 0.91093 0.88566 0.90521 1.20815 1.02932 1.33998 0.91590 0.89476 1.27355 0.92347 0.95742 1.03917 1.70407 1.19771 1.10094 1.36125 0.83592 0.77242 0.76684 0.73644 1.19192 1.19699 1.19341 0.87458 0.81788 0.89729 0.84391 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.38 18.54 41.84 0.78 -10.61 15 2 C 0.30 6.74 14.28 -22.47 -0.32 6.42 15 3 C -0.15 -3.28 5.92 -104.40 -0.62 -3.90 15 4 C 0.02 0.43 9.75 -38.81 -0.38 0.05 15 5 C -0.29 -5.64 6.44 -38.27 -0.25 -5.89 15 6 S 0.12 1.80 22.97 -107.50 -2.47 -0.67 15 7 C -0.16 -2.19 10.61 29.71 0.32 -1.87 15 8 C -0.21 -3.65 5.83 -106.19 -0.62 -4.27 15 9 C 0.38 6.35 11.28 32.03 0.36 6.71 15 10 O -0.45 -9.57 15.45 5.44 0.08 -9.48 15 11 C 0.02 0.34 6.00 -105.15 -0.63 -0.29 15 12 C -0.20 -4.69 7.48 -38.27 -0.29 -4.98 15 13 C 0.12 2.97 5.45 -104.85 -0.57 2.40 15 14 C -0.47 -11.53 8.49 -37.93 -0.32 -11.85 15 15 H 0.09 2.15 7.44 -52.49 -0.39 1.76 15 16 C 0.03 0.81 4.91 -17.30 -0.08 0.73 15 17 N -0.74 -18.57 12.31 55.56 0.68 -17.89 15 18 Si 1.07 20.47 30.01 -169.99 -5.10 15.37 15 19 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 22 H 0.11 1.86 8.06 -52.49 -0.42 1.43 15 23 H 0.16 1.55 8.06 -52.49 -0.42 1.13 15 24 H 0.09 0.96 8.06 -52.48 -0.42 0.54 15 25 H 0.14 3.55 4.68 -52.48 -0.25 3.30 15 26 H 0.31 7.86 6.78 -40.82 -0.28 7.58 15 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -27.74 260.12 -6.49 -34.22 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -0.98 Total: 1.87 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -3.40 Total: -16.74 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 1.46 Total: -28.49 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.10 Total: 15.37 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.67 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.74 -6.49 -34.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278022.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.643 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds