Wall clock time and date at job start Mon Mar 30 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38594 * 120.48492 * 280.71684 * 3 2 1 5 5 C 1.39951 * 120.71869 * 180.26079 * 4 3 2 6 6 S 1.76006 * 129.48693 * 179.73374 * 5 4 3 7 7 C 1.69918 * 93.20622 * 179.97438 * 6 5 4 8 8 C 1.35362 * 112.20966 * 0.02562 * 7 6 5 9 9 C 1.41632 * 123.16253 * 179.97438 * 8 7 6 10 10 O 1.21416 * 120.00125 * 179.97438 * 9 8 7 11 11 C 1.40016 * 120.61320 * 359.72005 * 5 4 3 12 12 C 1.39956 * 120.26293 * 0.02562 * 11 5 4 13 13 C 1.40029 * 120.41245 * 359.97438 * 12 11 5 14 14 C 1.40704 * 120.51534 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00246 * 205.01935 * 14 13 12 16 16 C 1.40168 * 119.99792 * 25.02885 * 14 13 12 17 17 N 1.30716 * 120.00278 * 26.67210 * 16 14 13 18 18 Si 1.86806 * 119.99891 * 206.66765 * 16 14 13 19 19 H 1.48491 * 109.47259 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47095 * 300.00239 * 18 16 14 21 21 H 1.48502 * 109.46998 * 59.99785 * 18 16 14 22 22 H 1.07998 * 119.64008 * 359.95437 * 4 3 2 23 23 H 1.07998 * 123.89228 * 179.97438 * 7 6 5 24 24 H 1.08007 * 120.00291 * 359.97438 * 9 8 7 25 25 H 1.08006 * 119.78851 * 180.02562 * 12 11 5 26 26 H 0.96990 * 120.00003 * 5.78423 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2712 -0.2211 1.1735 5 6 4.6707 -0.2162 1.1802 6 16 5.7845 -0.4617 2.5207 7 6 7.1582 -0.2730 1.5387 8 6 6.8344 -0.0327 0.2465 9 6 7.8003 0.1617 -0.7710 10 8 7.4452 0.3733 -1.9126 11 6 5.3885 0.0074 -0.0010 12 6 4.7123 0.2298 -1.2060 13 6 3.3125 0.2306 -1.2436 14 6 2.6304 0.4545 -2.4537 15 1 1.6257 0.8503 -2.4421 16 6 3.2550 0.1636 -3.6744 17 7 4.1866 -0.7516 -3.7302 18 14 2.7559 1.0838 -5.2216 19 1 3.5603 0.5945 -6.3698 20 1 1.3142 0.8521 -5.4919 21 1 2.9967 2.5370 -5.0326 22 1 2.7333 -0.3948 2.0938 23 1 8.1727 -0.3365 1.9036 24 1 8.8527 0.1218 -0.5314 25 1 5.2737 0.4010 -2.1127 26 1 4.3874 -1.2876 -2.9472 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396278022.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:31 Heat of formation + Delta-G solvation = 2.681103 kcal Electronic energy + Delta-G solvation = -15612.311754 eV Core-core repulsion = 12939.201505 eV Total energy + Delta-G solvation = -2673.110249 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65814 -39.27304 -37.40556 -36.66905 -35.01717 -31.46111 -30.86571 -27.71032 -26.19769 -24.60703 -23.07406 -20.96256 -20.04474 -19.13005 -17.98810 -17.36677 -16.49187 -16.15255 -15.72184 -15.41011 -15.12703 -14.83024 -14.71656 -14.28387 -14.22406 -13.73198 -13.61663 -13.43045 -13.12600 -12.85600 -12.46836 -12.05460 -11.86155 -11.73266 -11.36645 -11.01038 -10.48077 -10.32615 -9.56276 -9.27476 -8.66098 -6.62206 -0.51109 0.39498 0.67181 0.76190 1.14269 1.44731 1.51529 1.74652 1.82367 1.89785 2.22444 2.44261 2.56526 3.31127 3.35591 3.63882 3.94984 4.07535 4.54022 4.62328 4.69111 4.81327 5.08178 5.17361 5.23186 5.47514 5.49797 5.66539 5.92963 6.06036 6.42366 6.61402 6.71372 6.82271 7.81318 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.009212 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.021330 B = 3038.630017 C = 4458.121054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.303 3.697 3 C -0.166 4.166 4 C 0.029 3.971 5 C -0.308 4.308 6 S 0.215 5.785 7 C -0.112 4.112 8 C -0.261 4.261 9 C 0.389 3.611 10 O -0.516 6.516 11 C 0.008 3.992 12 C -0.231 4.231 13 C 0.108 3.892 14 C -0.511 4.511 15 H 0.074 0.926 16 C 0.006 3.994 17 N -0.772 5.772 18 Si 1.110 2.890 19 H -0.264 1.264 20 H -0.258 1.258 21 H -0.261 1.261 22 H 0.140 0.860 23 H 0.226 0.774 24 H 0.152 0.848 25 H 0.113 0.887 26 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 0.273 9.585 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.007 4.007 3 C -0.173 4.173 4 C 0.004 3.996 5 C -0.422 4.422 6 S 0.481 5.519 7 C -0.250 4.250 8 C -0.279 4.279 9 C 0.250 3.750 10 O -0.395 6.395 11 C 0.003 3.997 12 C -0.253 4.253 13 C 0.103 3.897 14 C -0.538 4.538 15 H 0.092 0.908 16 C -0.216 4.216 17 N -0.392 5.392 18 Si 0.926 3.074 19 H -0.188 1.188 20 H -0.182 1.182 21 H -0.185 1.185 22 H 0.158 0.842 23 H 0.243 0.757 24 H 0.168 0.832 25 H 0.131 0.869 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.198 0.187 8.985 12.165 hybrid contribution -0.025 -0.005 -0.045 0.051 sum 8.173 0.182 8.941 12.115 Atomic orbital electron populations 1.81029 1.12700 1.14272 1.10222 1.25683 0.92581 0.91256 0.91208 1.16886 0.83371 1.20912 0.96104 1.20214 0.91215 0.92392 0.95731 1.22192 0.97139 1.24587 0.98261 1.82127 0.91473 1.71316 1.07002 1.26086 1.07223 0.95723 0.95965 1.20180 0.93672 1.16543 0.97510 1.22988 0.95713 0.70440 0.85809 1.90600 1.85839 1.37589 1.25423 1.19158 0.92191 0.95391 0.92997 1.20987 0.92645 1.14223 0.97470 1.18518 0.91787 0.88216 0.91224 1.20822 1.02912 1.37324 0.92737 0.90773 1.28532 0.91530 0.95248 1.06253 1.70497 1.21902 1.11545 1.35240 0.83099 0.77644 0.75980 0.70674 1.18850 1.18215 1.18518 0.84238 0.75721 0.83186 0.86943 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.85 18.54 19.00 0.35 -23.50 15 2 C 0.30 14.12 14.28 88.33 1.26 15.38 15 3 C -0.17 -7.65 5.92 -19.72 -0.12 -7.77 15 4 C 0.03 1.11 9.75 22.77 0.22 1.33 15 5 C -0.31 -11.34 6.44 23.12 0.15 -11.19 15 6 S 0.21 5.07 22.97 -56.49 -1.30 3.77 15 7 C -0.11 -2.39 10.61 67.16 0.71 -1.68 15 8 C -0.26 -8.42 5.83 -20.88 -0.12 -8.54 15 9 C 0.39 12.04 11.28 68.66 0.77 12.81 15 10 O -0.52 -22.50 15.45 -3.45 -0.05 -22.56 15 11 C 0.01 0.35 6.00 -20.21 -0.12 0.23 15 12 C -0.23 -11.71 7.48 23.12 0.17 -11.54 15 13 C 0.11 5.61 5.45 -20.01 -0.11 5.50 15 14 C -0.51 -27.14 8.49 23.34 0.20 -26.94 15 15 H 0.07 3.96 7.44 -2.91 -0.02 3.94 15 16 C 0.01 0.32 4.91 85.33 0.42 0.74 15 17 N -0.77 -41.49 12.31 21.87 0.27 -41.22 15 18 Si 1.11 43.54 30.01 68.60 2.06 45.60 15 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 22 H 0.14 4.41 8.06 -2.91 -0.02 4.39 15 23 H 0.23 2.11 8.06 -2.91 -0.02 2.08 15 24 H 0.15 2.62 8.06 -2.91 -0.02 2.60 15 25 H 0.11 6.27 4.68 -2.91 -0.01 6.25 15 26 H 0.29 16.24 6.78 -92.72 -0.63 15.61 15 Total: -1.00 -68.00 260.12 6.16 -61.84 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.39 Total: 7.73 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.44 Total: -31.66 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 0.62 Total: -64.72 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.06 Total: 45.60 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.30 Total: 3.77 kcal Total: -68.00 6.16 -61.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278022.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.522 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds