Wall clock time and date at job start Mon Mar 30 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38744 * 119.83781 * 307.68852 * 3 2 1 5 5 C 1.40146 * 119.90703 * 180.02562 * 4 3 2 6 6 C 1.46944 * 119.84178 * 179.72246 * 5 4 3 7 7 O 1.21287 * 119.99992 * 179.97438 * 6 5 4 8 8 C 1.39003 * 120.31971 * 0.02562 * 5 4 3 9 9 C 1.41401 * 120.55868 * 0.02562 * 8 5 4 10 10 C 1.40008 * 128.30135 * 180.02562 * 9 8 5 11 11 C 1.36831 * 115.03608 * 179.97438 * 10 9 8 12 12 C 1.39889 * 124.79800 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00074 * 353.25435 * 12 11 10 14 14 C 1.40219 * 120.00134 * 173.25756 * 12 11 10 15 15 N 1.30745 * 119.99756 * 6.60898 * 14 12 11 16 16 Si 1.86796 * 120.00001 * 186.60955 * 14 12 11 17 17 H 1.48499 * 109.47232 * 94.98778 * 16 14 12 18 18 H 1.48503 * 109.47040 * 214.98508 * 16 14 12 19 19 H 1.48501 * 109.47294 * 334.98655 * 16 14 12 20 20 S 1.75432 * 110.40641 * 0.02562 * 11 10 9 21 21 C 1.40521 * 118.88745 * 359.97438 * 9 8 5 22 22 H 1.08003 * 120.04396 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.99926 * 0.02562 * 6 5 4 24 24 H 1.07999 * 119.72039 * 180.02562 * 8 5 4 25 25 H 1.08009 * 122.48722 * 359.96588 * 10 9 8 26 26 H 0.97005 * 119.99479 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2587 -0.7348 0.9524 5 6 4.6602 -0.7348 0.9541 6 6 5.3902 -1.5094 1.9672 7 8 6.6030 -1.5118 1.9710 8 6 5.3630 -0.0006 0.0059 9 6 4.6760 0.7557 -0.9716 10 6 5.2147 1.5464 -1.9938 11 6 4.2933 2.1650 -2.7941 12 6 4.6048 2.9989 -3.8731 13 1 5.6306 3.2813 -4.0588 14 6 3.5853 3.4683 -4.7137 15 7 2.3337 3.2347 -4.4165 16 14 4.0155 4.4274 -6.2579 17 1 4.0610 3.5022 -7.4185 18 1 2.9851 5.4700 -6.4961 19 1 5.3421 5.0724 -6.0866 20 16 2.6658 1.7643 -2.2758 21 6 3.2708 0.7521 -0.9688 22 1 2.7170 -1.3066 1.6914 23 1 4.8467 -2.0772 2.7079 24 1 6.4429 -0.0078 0.0158 25 1 6.2789 1.6600 -2.1397 26 1 1.6285 3.5591 -4.9982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396278070.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:58 Heat of formation + Delta-G solvation = 7.271040 kcal Electronic energy + Delta-G solvation = -15082.310480 eV Core-core repulsion = 12409.399265 eV Total energy + Delta-G solvation = -2672.911215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.26072 -37.86729 -36.12923 -35.06004 -33.42056 -30.70987 -29.56915 -26.01692 -24.43708 -22.75059 -21.86773 -19.30392 -18.49434 -17.13502 -16.23897 -16.00401 -15.58766 -14.62063 -14.18812 -14.07536 -14.01038 -13.39973 -13.10285 -12.67455 -12.64749 -12.30934 -11.95845 -11.91615 -11.71160 -11.59039 -10.77480 -10.63181 -10.55685 -10.45218 -9.62303 -9.51038 -9.32062 -8.77794 -7.77729 -7.42384 -6.77874 -4.93008 1.13205 1.42852 2.42275 2.73520 2.79953 2.80909 2.88111 3.13893 3.29061 3.38694 3.55370 3.72933 4.41526 4.41824 4.65593 4.78142 5.42661 5.67626 5.78746 6.03571 6.22645 6.45545 6.62577 6.66576 6.82191 6.94427 7.18669 7.39505 7.54632 7.70715 7.75614 7.95251 8.01196 8.16079 9.43069 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.006404 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.627002 B = 4371.450597 C = 5416.017441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.268 3.732 3 C 0.013 3.987 4 C -0.096 4.096 5 C -0.193 4.193 6 C 0.389 3.611 7 O -0.477 6.477 8 C -0.048 4.048 9 C 0.003 3.997 10 C -0.355 4.355 11 C 0.049 3.951 12 C -0.375 4.375 13 H 0.105 0.895 14 C 0.052 3.948 15 N -0.772 5.772 16 Si 0.942 3.058 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.254 1.254 20 S 0.168 5.832 21 C -0.209 4.209 22 H 0.125 0.875 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -1.843 2.181 3.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.046 4.046 3 C 0.005 3.995 4 C -0.119 4.119 5 C -0.197 4.197 6 C 0.249 3.751 7 O -0.352 6.352 8 C -0.069 4.069 9 C -0.005 4.005 10 C -0.379 4.379 11 C -0.070 4.070 12 C -0.408 4.408 13 H 0.122 0.878 14 C -0.170 4.170 15 N -0.397 5.397 16 Si 0.764 3.236 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.177 1.177 20 S 0.431 5.569 21 C -0.328 4.328 22 H 0.143 0.857 23 H 0.113 0.887 24 H 0.140 0.860 25 H 0.133 0.867 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.451 -1.362 1.547 2.521 hybrid contribution 1.769 0.040 -0.224 1.784 sum 0.318 -1.322 1.323 1.897 Atomic orbital electron populations 1.81122 1.12170 1.09501 1.09006 1.25948 0.92901 0.92905 0.92881 1.15071 0.83003 1.02671 0.98803 1.20590 0.92610 1.00285 0.98433 1.20105 0.93767 1.04869 1.00946 1.23905 0.88955 0.78121 0.84093 1.90488 1.17634 1.56413 1.70688 1.21363 0.99283 0.93927 0.92375 1.17902 0.90862 0.96503 0.95267 1.19627 0.98527 1.14762 1.05006 1.21456 0.94062 0.95604 0.95921 1.19432 0.96218 1.20153 1.05040 0.87756 1.26410 0.94036 0.95495 1.01092 1.68557 1.01042 1.33803 1.36340 0.85679 0.80112 0.79023 0.78775 1.18636 1.19416 1.17750 1.85252 1.07136 1.43771 1.20766 1.24057 0.97566 1.07210 1.03938 0.85737 0.88747 0.85951 0.86679 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.85 18.54 41.84 0.78 -8.07 15 2 C 0.27 5.14 15.02 -22.47 -0.34 4.80 15 3 C 0.01 0.25 5.75 -106.61 -0.61 -0.37 15 4 C -0.10 -1.51 9.46 -38.68 -0.37 -1.88 15 5 C -0.19 -3.15 5.84 -105.37 -0.62 -3.77 15 6 C 0.39 5.38 11.43 34.26 0.39 5.78 15 7 O -0.48 -8.23 17.10 5.55 0.09 -8.14 15 8 C -0.05 -0.92 9.62 -38.10 -0.37 -1.28 15 9 C 0.00 0.06 5.84 -107.17 -0.63 -0.56 15 10 C -0.36 -8.08 10.14 -39.43 -0.40 -8.48 15 11 C 0.05 1.16 6.10 -39.47 -0.24 0.92 15 12 C -0.37 -8.50 9.26 -38.22 -0.35 -8.85 15 13 H 0.10 2.21 7.86 -52.49 -0.41 1.80 15 14 C 0.05 1.10 5.49 -17.27 -0.09 1.00 15 15 N -0.77 -16.96 10.62 55.56 0.59 -16.37 15 16 Si 0.94 15.75 29.57 -169.99 -5.03 10.72 15 17 H -0.26 -4.36 7.11 56.52 0.40 -3.96 15 18 H -0.27 -4.43 7.11 56.52 0.40 -4.03 15 19 H -0.25 -4.18 7.11 56.52 0.40 -3.78 15 20 S 0.17 3.85 19.82 -107.50 -2.13 1.72 15 21 C -0.21 -4.50 6.36 -37.55 -0.24 -4.74 15 22 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 23 H 0.10 0.89 8.06 -52.49 -0.42 0.46 15 24 H 0.12 2.25 7.58 -52.49 -0.40 1.85 15 25 H 0.12 2.49 8.06 -52.48 -0.42 2.06 15 26 H 0.31 6.01 8.29 -40.82 -0.34 5.67 15 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -25.61 265.18 -6.77 -32.39 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -1.21 Total: 1.16 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -3.86 Total: -17.42 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 1.37 Total: -24.44 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 15.75 SS G_CDS: -5.03 Total: 10.72 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.13 Total: 1.72 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -25.61 -6.77 -32.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278070.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.658 kcal (2) G-P(sol) polarization free energy of solvation -25.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds