Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.33696 * 124.59915 * 250.82585 * 3 2 1 5 5 C 1.40685 * 115.61748 * 179.97438 * 4 3 2 6 6 C 1.40960 * 127.86708 * 179.97438 * 5 4 3 7 7 C 1.39715 * 120.52831 * 180.02562 * 6 5 4 8 8 C 1.40607 * 120.42374 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00156 * 147.80069 * 8 7 6 10 10 C 1.40236 * 119.99719 * 327.80118 * 8 7 6 11 11 N 1.30670 * 120.00417 * 340.40110 * 10 8 7 12 12 Si 1.86804 * 119.99719 * 160.39923 * 10 8 7 13 13 H 1.48500 * 109.47215 * 180.02562 * 12 10 8 14 14 H 1.48505 * 109.46994 * 299.99931 * 12 10 8 15 15 H 1.48498 * 109.47209 * 59.99966 * 12 10 8 16 16 C 1.47005 * 119.15415 * 0.24999 * 7 6 5 17 17 C 1.46330 * 120.51419 * 179.72725 * 16 7 6 18 18 O 1.21383 * 119.99824 * 0.30195 * 17 16 7 19 19 C 1.38848 * 118.97272 * 359.48561 * 16 7 6 20 20 C 1.39841 * 120.70578 * 0.52661 * 19 16 7 21 21 S 1.75394 * 124.60027 * 70.80852 * 3 2 1 22 22 H 1.08006 * 122.19270 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.73184 * 0.04053 * 6 5 4 24 24 H 0.97005 * 119.99615 * 354.28388 * 11 10 8 25 25 H 1.08001 * 120.00302 * 180.31073 * 17 16 7 26 26 H 1.08004 * 119.64845 * 180.24460 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3270 0.3624 1.0395 5 6 4.7166 0.2904 0.8322 6 6 5.7449 0.6078 1.7427 7 6 7.0858 0.4793 1.3719 8 6 8.1097 0.7971 2.2816 9 1 9.0456 0.2591 2.2508 10 6 7.9155 1.8127 3.2290 11 7 6.9819 2.7082 3.0450 12 14 8.9916 1.8851 4.7543 13 1 8.5869 3.0433 5.5910 14 1 8.8302 0.6315 5.5339 15 1 10.4125 2.0378 4.3509 16 6 7.4125 0.0135 0.0164 17 6 8.8068 -0.1261 -0.4053 18 8 9.7041 0.1382 0.3681 19 6 6.3777 -0.2967 -0.8559 20 6 5.0439 -0.1591 -0.4591 21 16 3.5642 -0.4735 -1.3635 22 1 2.9012 0.6887 1.9769 23 1 5.4941 0.9529 2.7349 24 1 6.4788 2.7209 2.2157 25 1 9.0374 -0.4643 -1.4048 26 1 6.6054 -0.6437 -1.8530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396278091.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = 24.072054 kcal Electronic energy + Delta-G solvation = -15322.709368 eV Core-core repulsion = 12650.526700 eV Total energy + Delta-G solvation = -2672.182668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.91312 -37.66051 -36.57693 -35.10711 -33.52460 -29.87355 -29.41919 -26.05931 -24.69712 -22.13984 -21.67692 -19.93946 -18.42711 -17.94795 -16.33926 -15.47442 -14.98142 -14.56492 -14.20365 -14.03857 -13.89548 -13.33465 -13.26008 -12.86392 -12.68581 -12.41062 -12.34063 -12.03115 -11.64790 -11.30894 -10.84485 -10.56383 -10.31280 -10.16701 -9.80703 -9.40701 -8.93672 -8.61086 -7.85744 -7.47650 -7.21913 -4.78280 0.62271 1.65034 2.10307 2.30417 2.52255 3.03834 3.06909 3.07562 3.23950 3.30740 3.65470 3.79529 4.06211 4.22741 4.99721 5.14782 5.39130 5.65601 5.84889 5.94187 6.21091 6.37901 6.49400 6.75924 6.92827 7.03453 7.21116 7.40676 7.52492 7.60540 7.77344 8.27543 8.42095 8.51808 9.66401 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.006695 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.532282 B = 4181.166783 C = 5217.843571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.291 3.709 3 C -0.130 4.130 4 C -0.033 4.033 5 C -0.037 4.037 6 C -0.168 4.168 7 C 0.105 3.895 8 C -0.443 4.443 9 H 0.112 0.888 10 C 0.028 3.972 11 N -0.771 5.771 12 Si 1.070 2.930 13 H -0.271 1.271 14 H -0.270 1.270 15 H -0.269 1.269 16 C -0.265 4.265 17 C 0.371 3.629 18 O -0.472 6.472 19 C 0.008 3.992 20 C -0.245 4.245 21 S 0.071 5.929 22 H 0.141 0.859 23 H 0.117 0.883 24 H 0.303 0.697 25 H 0.073 0.927 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -3.025 -3.107 4.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.024 4.024 3 C -0.248 4.248 4 C -0.071 4.071 5 C -0.042 4.042 6 C -0.191 4.191 7 C 0.100 3.900 8 C -0.469 4.469 9 H 0.130 0.870 10 C -0.196 4.196 11 N -0.393 5.393 12 Si 0.892 3.108 13 H -0.196 1.196 14 H -0.196 1.196 15 H -0.194 1.194 16 C -0.270 4.270 17 C 0.235 3.765 18 O -0.349 6.349 19 C -0.014 4.014 20 C -0.360 4.360 21 S 0.333 5.667 22 H 0.158 0.842 23 H 0.135 0.865 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.935 -2.530 -2.801 4.242 hybrid contribution 0.121 -0.354 -0.293 0.476 sum -1.814 -2.884 -3.094 4.603 Atomic orbital electron populations 1.81218 1.11327 1.09976 1.07799 1.24586 0.91265 0.93040 0.93542 1.19173 0.88196 1.15967 1.01422 1.20403 0.92727 0.96083 0.97855 1.17868 0.91578 1.00874 0.93907 1.21204 0.91165 1.08567 0.98126 1.18345 0.91863 0.90078 0.89721 1.21310 1.02648 1.14046 1.08930 0.87047 1.27482 0.96985 0.92133 1.03001 1.70429 1.13313 1.28035 1.27507 0.83538 0.75759 0.77898 0.73581 1.19552 1.19559 1.19424 1.21438 0.94131 1.16540 0.94842 1.23205 0.87615 0.74730 0.90980 1.90458 1.49412 1.38877 1.56181 1.20253 0.89442 0.94544 0.97211 1.21775 0.95649 1.20422 0.98155 1.83625 0.95458 1.74150 1.13508 0.84167 0.86542 0.88255 0.91141 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.31 18.54 41.84 0.78 -6.53 15 2 C 0.29 4.72 15.75 -22.47 -0.35 4.36 15 3 C -0.13 -2.11 6.17 -39.25 -0.24 -2.35 15 4 C -0.03 -0.56 9.98 -40.25 -0.40 -0.96 15 5 C -0.04 -0.72 5.84 -107.06 -0.63 -1.35 15 6 C -0.17 -3.64 7.87 -38.00 -0.30 -3.94 15 7 C 0.11 2.42 5.34 -104.90 -0.56 1.86 15 8 C -0.44 -10.59 7.86 -37.94 -0.30 -10.88 15 9 H 0.11 2.75 5.85 -52.49 -0.31 2.45 15 10 C 0.03 0.64 5.03 -17.30 -0.09 0.55 15 11 N -0.77 -18.23 12.48 55.56 0.69 -17.54 15 12 Si 1.07 19.74 29.98 -169.99 -5.10 14.64 15 13 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 14 H -0.27 -4.77 7.11 56.52 0.40 -4.36 15 15 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 16 C -0.27 -5.46 6.04 -102.87 -0.62 -6.08 15 17 C 0.37 7.10 11.42 33.98 0.39 7.49 15 18 O -0.47 -10.67 14.49 5.47 0.08 -10.59 15 19 C 0.01 0.15 9.79 -38.76 -0.38 -0.23 15 20 C -0.25 -4.58 6.47 -38.10 -0.25 -4.83 15 21 S 0.07 1.13 23.22 -107.50 -2.50 -1.37 15 22 H 0.14 2.09 8.06 -52.48 -0.42 1.67 15 23 H 0.12 2.57 6.75 -52.49 -0.35 2.22 15 24 H 0.30 7.29 6.51 -40.82 -0.27 7.03 15 25 H 0.07 1.04 8.06 -52.49 -0.42 0.62 15 26 H 0.11 1.62 8.06 -52.48 -0.42 1.20 15 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -25.19 260.88 -6.83 -32.02 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -0.99 Total: 1.80 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.73 Total: -16.36 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 1.47 Total: -24.07 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.10 Total: 14.64 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.19 -6.83 -32.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278091.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.089 kcal (2) G-P(sol) polarization free energy of solvation -25.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds