Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.33696 * 124.59915 * 250.82585 * 3 2 1 5 5 C 1.40685 * 115.61748 * 179.97438 * 4 3 2 6 6 C 1.40960 * 127.86708 * 179.97438 * 5 4 3 7 7 C 1.39715 * 120.52831 * 180.02562 * 6 5 4 8 8 C 1.40607 * 120.42374 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00156 * 147.80069 * 8 7 6 10 10 C 1.40236 * 119.99719 * 327.80118 * 8 7 6 11 11 N 1.30670 * 120.00417 * 340.40110 * 10 8 7 12 12 Si 1.86804 * 119.99719 * 160.39923 * 10 8 7 13 13 H 1.48500 * 109.47215 * 180.02562 * 12 10 8 14 14 H 1.48505 * 109.46994 * 299.99931 * 12 10 8 15 15 H 1.48498 * 109.47209 * 59.99966 * 12 10 8 16 16 C 1.47005 * 119.15415 * 0.24999 * 7 6 5 17 17 C 1.46330 * 120.51419 * 179.72725 * 16 7 6 18 18 O 1.21383 * 119.99824 * 0.30195 * 17 16 7 19 19 C 1.38848 * 118.97272 * 359.48561 * 16 7 6 20 20 C 1.39841 * 120.70578 * 0.52661 * 19 16 7 21 21 S 1.75394 * 124.60027 * 70.80852 * 3 2 1 22 22 H 1.08006 * 122.19270 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.73184 * 0.04053 * 6 5 4 24 24 H 0.97005 * 119.99615 * 354.28388 * 11 10 8 25 25 H 1.08001 * 120.00302 * 180.31073 * 17 16 7 26 26 H 1.08004 * 119.64845 * 180.24460 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3270 0.3624 1.0395 5 6 4.7166 0.2904 0.8322 6 6 5.7449 0.6078 1.7427 7 6 7.0858 0.4793 1.3719 8 6 8.1097 0.7971 2.2816 9 1 9.0456 0.2591 2.2508 10 6 7.9155 1.8127 3.2290 11 7 6.9819 2.7082 3.0450 12 14 8.9916 1.8851 4.7543 13 1 8.5869 3.0433 5.5910 14 1 8.8302 0.6315 5.5339 15 1 10.4125 2.0378 4.3509 16 6 7.4125 0.0135 0.0164 17 6 8.8068 -0.1261 -0.4053 18 8 9.7041 0.1382 0.3681 19 6 6.3777 -0.2967 -0.8559 20 6 5.0439 -0.1591 -0.4591 21 16 3.5642 -0.4735 -1.3635 22 1 2.9012 0.6887 1.9769 23 1 5.4941 0.9529 2.7349 24 1 6.4788 2.7209 2.2157 25 1 9.0374 -0.4643 -1.4048 26 1 6.6054 -0.6437 -1.8530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396278091.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = 12.120849 kcal Electronic energy + Delta-G solvation = -15323.227611 eV Core-core repulsion = 12650.526700 eV Total energy + Delta-G solvation = -2672.700911 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46455 -39.21537 -38.00157 -36.65715 -35.05544 -31.44948 -30.95025 -27.67318 -26.20042 -23.62261 -23.22357 -21.47345 -19.91566 -19.48734 -17.84252 -16.96380 -16.52797 -16.03215 -15.70048 -15.52406 -15.35596 -14.90296 -14.70638 -14.33250 -14.19707 -13.93488 -13.82027 -13.59309 -13.15501 -12.80715 -12.28677 -12.01296 -11.81355 -11.66487 -11.34900 -10.99769 -10.45979 -10.17010 -9.47018 -9.11849 -8.64552 -6.48164 -0.84504 0.27997 0.64226 0.71300 1.03351 1.51580 1.60023 1.71961 1.79729 1.85756 2.22249 2.29342 2.61655 2.68822 3.36980 3.73852 3.97430 4.23693 4.40621 4.55867 4.73730 4.86360 4.97916 5.18284 5.36287 5.46779 5.56600 5.76296 5.99184 6.13226 6.19469 6.61566 6.76469 7.00405 7.96158 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.006695 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.532282 B = 4181.166783 C = 5217.843571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.304 3.696 3 C -0.120 4.120 4 C -0.049 4.049 5 C -0.035 4.035 6 C -0.202 4.202 7 C 0.088 3.912 8 C -0.493 4.493 9 H 0.093 0.907 10 C 0.000 4.000 11 N -0.801 5.801 12 Si 1.112 2.888 13 H -0.268 1.268 14 H -0.259 1.259 15 H -0.266 1.266 16 C -0.279 4.279 17 C 0.376 3.624 18 O -0.510 6.510 19 C 0.017 3.983 20 C -0.255 4.255 21 S 0.145 5.855 22 H 0.155 0.845 23 H 0.098 0.902 24 H 0.289 0.711 25 H 0.137 0.863 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 -4.275 -5.505 7.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.011 4.011 3 C -0.238 4.238 4 C -0.087 4.087 5 C -0.041 4.041 6 C -0.225 4.225 7 C 0.084 3.916 8 C -0.520 4.520 9 H 0.111 0.889 10 C -0.218 4.218 11 N -0.424 5.424 12 Si 0.930 3.070 13 H -0.193 1.193 14 H -0.184 1.184 15 H -0.190 1.190 16 C -0.284 4.284 17 C 0.241 3.759 18 O -0.388 6.388 19 C -0.005 4.005 20 C -0.370 4.370 21 S 0.409 5.591 22 H 0.172 0.828 23 H 0.116 0.884 24 H 0.102 0.898 25 H 0.153 0.847 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.946 -3.799 -5.232 7.105 hybrid contribution 0.203 -0.133 0.095 0.261 sum -2.744 -3.932 -5.137 7.026 Atomic orbital electron populations 1.81254 1.11676 1.10137 1.08179 1.24375 0.90920 0.92693 0.93141 1.19267 0.88323 1.14590 1.01602 1.20411 0.91686 0.97430 0.99148 1.18074 0.92341 0.99649 0.94064 1.21008 0.91578 1.11666 0.98257 1.18726 0.92290 0.89728 0.90896 1.21212 1.02654 1.16244 1.11898 0.88881 1.28492 0.97249 0.91304 1.04743 1.70517 1.15382 1.29377 1.27154 0.83040 0.74516 0.78266 0.71220 1.19273 1.18387 1.19048 1.21942 0.96228 1.15728 0.94468 1.24020 0.86285 0.72893 0.92695 1.90466 1.50240 1.40289 1.57837 1.20677 0.88501 0.92743 0.98616 1.22333 0.97667 1.18608 0.98410 1.83437 0.92332 1.72126 1.11254 0.82783 0.88395 0.89803 0.84680 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.76 18.54 19.00 0.35 -13.41 15 2 C 0.30 8.95 15.75 88.33 1.39 10.34 15 3 C -0.12 -3.53 6.17 22.49 0.14 -3.39 15 4 C -0.05 -1.58 9.98 21.84 0.22 -1.37 15 5 C -0.04 -1.36 5.84 -21.44 -0.13 -1.48 15 6 C -0.20 -9.11 7.87 23.29 0.18 -8.93 15 7 C 0.09 4.21 5.34 -20.04 -0.11 4.10 15 8 C -0.49 -24.96 7.86 23.33 0.18 -24.78 15 9 H 0.09 4.91 5.85 -2.91 -0.02 4.89 15 10 C 0.00 0.01 5.03 85.35 0.43 0.44 15 11 N -0.80 -40.38 12.48 21.88 0.27 -40.10 15 12 Si 1.11 41.90 29.98 68.60 2.06 43.95 15 13 H -0.27 -9.82 7.11 99.48 0.71 -9.12 15 14 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 15 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 16 C -0.28 -11.20 6.04 -18.73 -0.11 -11.31 15 17 C 0.38 13.67 11.42 69.93 0.80 14.46 15 18 O -0.51 -23.14 14.49 -3.35 -0.05 -23.19 15 19 C 0.02 0.55 9.79 22.80 0.22 0.78 15 20 C -0.26 -8.77 6.47 23.23 0.15 -8.62 15 21 S 0.15 3.99 23.22 -56.49 -1.31 2.68 15 22 H 0.15 4.49 8.06 -2.91 -0.02 4.47 15 23 H 0.10 4.67 6.75 -2.91 -0.02 4.65 15 24 H 0.29 14.94 6.51 -92.70 -0.60 14.33 15 25 H 0.14 3.26 8.06 -2.91 -0.02 3.23 15 26 H 0.16 3.67 8.06 -2.91 -0.02 3.65 15 Total: -1.00 -57.24 260.88 6.10 -51.14 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.41 Total: 8.69 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.37 Total: -29.76 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.63 Total: -53.52 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.06 Total: 43.95 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.31 Total: 2.68 kcal Total: -57.24 6.10 -51.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278091.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.260 kcal (2) G-P(sol) polarization free energy of solvation -57.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds