Wall clock time and date at job start Mon Mar 30 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39223 * 119.80862 * 342.97541 * 3 2 1 5 5 C 1.37707 * 120.35029 * 180.02562 * 4 3 2 6 6 C 1.39588 * 120.19198 * 359.97392 * 5 4 3 7 7 C 1.46882 * 119.86419 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99710 * 179.97438 * 7 6 5 9 9 C 1.41389 * 120.27105 * 0.04131 * 6 5 4 10 10 S 1.75782 * 130.22460 * 179.97438 * 9 6 5 11 11 C 1.69986 * 93.19993 * 180.02562 * 10 9 6 12 12 C 1.36502 * 111.91403 * 359.97438 * 11 10 9 13 13 C 1.40884 * 123.28749 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00342 * 154.24997 * 13 12 11 15 15 C 1.39743 * 120.00253 * 334.25140 * 13 12 11 16 16 N 1.31052 * 119.99772 * 350.22516 * 15 13 12 17 17 Si 1.86793 * 120.00301 * 170.21909 * 15 13 12 18 18 H 1.48500 * 109.47303 * 90.00366 * 17 15 13 19 19 H 1.48504 * 109.47350 * 210.00116 * 17 15 13 20 20 H 1.48500 * 109.47325 * 329.99971 * 17 15 13 21 21 C 1.39268 * 119.57975 * 359.68697 * 9 6 5 22 22 H 1.07999 * 119.82514 * 359.97438 * 4 3 2 23 23 H 1.08007 * 119.90332 * 180.02562 * 5 4 3 24 24 H 1.07994 * 120.00150 * 359.97438 * 7 6 5 25 25 H 1.08004 * 124.04208 * 180.02562 * 11 10 9 26 26 H 0.96999 * 119.99990 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2606 -1.1541 0.3537 5 6 4.6376 -1.1658 0.3580 6 6 5.3504 -0.0182 0.0067 7 6 6.8191 -0.0389 0.0132 8 8 7.4409 0.9568 -0.2921 9 6 4.6645 1.1640 -0.3550 10 16 5.2875 2.7360 -0.8356 11 6 3.7340 3.3961 -1.0371 12 6 2.7543 2.4870 -0.7597 13 6 1.3793 2.7804 -0.8499 14 1 0.6688 1.9878 -1.0329 15 6 0.9345 4.0969 -0.7026 16 7 1.7627 5.0263 -0.2930 17 14 -0.8402 4.5321 -1.0897 18 1 -1.6660 4.3790 0.1350 19 1 -0.9133 5.9377 -1.5633 20 1 -1.3526 3.6258 -2.1486 21 6 3.2719 1.1752 -0.3652 22 1 2.7150 -2.0453 0.6269 23 1 5.1676 -2.0658 0.6332 24 1 7.3452 -0.9405 0.2898 25 1 3.5449 4.4129 -1.3483 26 1 1.4540 5.9401 -0.1904 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396278517.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:47 Heat of formation + Delta-G solvation = 32.836694 kcal Electronic energy + Delta-G solvation = -15604.523900 eV Core-core repulsion = 12932.721295 eV Total energy + Delta-G solvation = -2671.802605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47962 -38.13519 -35.77237 -35.13765 -32.54080 -31.10839 -28.61676 -26.42360 -24.83633 -22.76878 -21.08454 -19.85358 -18.87664 -16.85080 -16.26839 -15.81533 -15.13541 -14.72923 -14.21400 -14.14145 -13.98562 -13.37637 -13.24077 -12.92196 -12.29045 -12.14496 -11.91529 -11.62836 -11.46554 -11.09765 -10.95903 -10.59822 -10.36809 -10.14086 -9.72506 -9.35945 -9.11642 -8.76075 -7.67174 -6.92979 -6.75976 -4.42710 0.58346 1.63281 2.42504 2.62275 2.94048 3.05676 3.12534 3.30535 3.55127 3.65281 3.71322 3.94466 4.36748 4.40444 4.55732 5.08110 5.13982 5.27704 5.55578 5.78185 5.95358 6.26387 6.37596 6.60311 6.62601 7.05526 7.09976 7.52797 7.69301 7.82478 8.07614 8.28681 8.64060 8.75898 10.18786 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.008615 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.957376 B = 3249.440778 C = 4371.575608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.272 3.728 3 C 0.043 3.957 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.154 4.154 7 C 0.371 3.629 8 O -0.452 6.452 9 C -0.112 4.112 10 S 0.135 5.865 11 C -0.364 4.364 12 C 0.072 3.928 13 C -0.435 4.435 14 H 0.080 0.920 15 C 0.072 3.928 16 N -0.795 5.795 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.034 4.034 22 H 0.131 0.869 23 H 0.136 0.864 24 H 0.101 0.899 25 H 0.163 0.837 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 -9.146 1.254 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.043 4.043 3 C 0.038 3.962 4 C -0.142 4.142 5 C -0.089 4.089 6 C -0.163 4.163 7 C 0.230 3.770 8 O -0.326 6.326 9 C -0.230 4.230 10 S 0.403 5.597 11 C -0.500 4.500 12 C 0.063 3.937 13 C -0.468 4.468 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.421 5.421 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.047 4.047 22 H 0.149 0.851 23 H 0.154 0.846 24 H 0.117 0.883 25 H 0.180 0.820 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.986 -7.566 0.908 9.690 hybrid contribution -2.125 -0.194 0.157 2.140 sum 3.861 -7.760 1.065 8.733 Atomic orbital electron populations 1.81090 1.12174 1.08595 1.08191 1.25463 0.92649 0.92453 0.93740 1.15995 0.84273 0.93992 1.01987 1.20639 0.94175 0.96448 1.02904 1.20861 0.93380 0.96635 0.98028 1.20308 0.95822 0.93330 1.06843 1.23952 0.88258 0.91466 0.73367 1.90529 1.69894 1.37288 1.34892 1.22927 0.96099 0.99113 1.04864 1.82592 1.09130 0.98903 1.69097 1.24717 0.93668 1.06860 1.24747 1.17268 0.94683 0.86867 0.94841 1.19152 0.91512 0.93834 1.42291 0.90249 1.25738 0.99824 0.96108 0.92851 1.69836 1.36496 1.02690 1.33101 0.86278 0.82125 0.78369 0.79954 1.19425 1.19994 1.18487 1.19687 0.91490 0.94475 0.99084 0.85114 0.84636 0.88256 0.81963 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.17 17.80 41.84 0.74 -8.42 15 2 C 0.27 5.53 12.79 -22.47 -0.29 5.24 15 3 C 0.04 0.81 5.78 -106.28 -0.61 0.19 15 4 C -0.12 -1.64 9.68 -39.41 -0.38 -2.02 15 5 C -0.07 -0.85 9.74 -39.27 -0.38 -1.23 15 6 C -0.15 -2.41 5.90 -104.70 -0.62 -3.02 15 7 C 0.37 4.99 11.43 34.23 0.39 5.38 15 8 O -0.45 -7.88 15.74 5.54 0.09 -7.79 15 9 C -0.11 -2.28 6.31 -38.00 -0.24 -2.52 15 10 S 0.14 2.93 21.03 -107.50 -2.26 0.67 15 11 C -0.36 -9.15 9.49 30.11 0.29 -8.86 15 12 C 0.07 1.83 5.66 -106.22 -0.60 1.23 15 13 C -0.44 -11.53 8.36 -38.02 -0.32 -11.84 15 14 H 0.08 2.08 5.32 -52.49 -0.28 1.80 15 15 C 0.07 1.84 5.36 -17.32 -0.09 1.75 15 16 N -0.80 -20.77 10.93 55.54 0.61 -20.16 15 17 Si 0.91 19.88 29.57 -169.99 -5.03 14.85 15 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 20 H -0.26 -5.75 7.11 56.52 0.40 -5.35 15 21 C -0.03 -0.76 6.00 -104.88 -0.63 -1.39 15 22 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 23 H 0.14 1.02 8.06 -52.48 -0.42 0.60 15 24 H 0.10 0.81 8.06 -52.49 -0.42 0.39 15 25 H 0.16 4.34 6.45 -52.48 -0.34 4.01 15 26 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 LS Contribution 257.12 15.07 3.87 3.87 Total: -1.00 -29.66 257.12 -6.48 -36.14 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -1.02 Total: -2.07 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -3.49 Total: -17.09 kcal Atomic # 7 Polarization: -29.94 SS G_CDS: 1.35 Total: -28.59 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.26 Total: 0.67 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.66 -6.48 -36.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278517.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.980 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds