Wall clock time and date at job start Mon Mar 30 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39223 * 119.80862 * 342.97541 * 3 2 1 5 5 C 1.37707 * 120.35029 * 180.02562 * 4 3 2 6 6 C 1.39588 * 120.19198 * 359.97392 * 5 4 3 7 7 C 1.46882 * 119.86419 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99710 * 179.97438 * 7 6 5 9 9 C 1.41389 * 120.27105 * 0.04131 * 6 5 4 10 10 S 1.75782 * 130.22460 * 179.97438 * 9 6 5 11 11 C 1.69986 * 93.19993 * 180.02562 * 10 9 6 12 12 C 1.36502 * 111.91403 * 359.97438 * 11 10 9 13 13 C 1.40884 * 123.28749 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00342 * 154.24997 * 13 12 11 15 15 C 1.39743 * 120.00253 * 334.25140 * 13 12 11 16 16 N 1.31052 * 119.99772 * 350.22516 * 15 13 12 17 17 Si 1.86793 * 120.00301 * 170.21909 * 15 13 12 18 18 H 1.48500 * 109.47303 * 90.00366 * 17 15 13 19 19 H 1.48504 * 109.47350 * 210.00116 * 17 15 13 20 20 H 1.48500 * 109.47325 * 329.99971 * 17 15 13 21 21 C 1.39268 * 119.57975 * 359.68697 * 9 6 5 22 22 H 1.07999 * 119.82514 * 359.97438 * 4 3 2 23 23 H 1.08007 * 119.90332 * 180.02562 * 5 4 3 24 24 H 1.07994 * 120.00150 * 359.97438 * 7 6 5 25 25 H 1.08004 * 124.04208 * 180.02562 * 11 10 9 26 26 H 0.96999 * 119.99990 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2606 -1.1541 0.3537 5 6 4.6376 -1.1658 0.3580 6 6 5.3504 -0.0182 0.0067 7 6 6.8191 -0.0389 0.0132 8 8 7.4409 0.9568 -0.2921 9 6 4.6645 1.1640 -0.3550 10 16 5.2875 2.7360 -0.8356 11 6 3.7340 3.3961 -1.0371 12 6 2.7543 2.4870 -0.7597 13 6 1.3793 2.7804 -0.8499 14 1 0.6688 1.9878 -1.0329 15 6 0.9345 4.0969 -0.7026 16 7 1.7627 5.0263 -0.2930 17 14 -0.8402 4.5321 -1.0897 18 1 -1.6660 4.3790 0.1350 19 1 -0.9133 5.9377 -1.5633 20 1 -1.3526 3.6258 -2.1486 21 6 3.2719 1.1752 -0.3652 22 1 2.7150 -2.0453 0.6269 23 1 5.1676 -2.0658 0.6332 24 1 7.3452 -0.9405 0.2898 25 1 3.5449 4.4129 -1.3483 26 1 1.4540 5.9401 -0.1904 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396278517.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:47 Heat of formation + Delta-G solvation = 14.326995 kcal Electronic energy + Delta-G solvation = -15605.326541 eV Core-core repulsion = 12932.721295 eV Total energy + Delta-G solvation = -2672.605245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81164 -39.43442 -37.35501 -36.80604 -34.26203 -32.45912 -30.20758 -28.16593 -26.24652 -24.26815 -22.30754 -21.53090 -20.32872 -18.61388 -17.67822 -17.17859 -16.82016 -16.11903 -15.60391 -15.46938 -15.45611 -14.82519 -14.68100 -14.58942 -13.93352 -13.78757 -13.36331 -13.27021 -13.11967 -12.77061 -12.67052 -12.18626 -12.01668 -11.72204 -11.32779 -11.13537 -10.47540 -10.23720 -9.22880 -8.70955 -8.57777 -6.37348 -0.72140 0.24722 1.08071 1.13194 1.24002 1.26987 1.36468 1.71555 1.87029 1.95271 2.12481 2.22246 2.86454 2.99532 3.27337 3.51652 3.91808 4.07887 4.43432 4.63699 4.67676 4.90750 5.14113 5.14466 5.23250 5.31669 5.57959 5.86202 5.89959 6.38848 6.52310 6.67720 6.75697 6.84789 8.31527 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.008615 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.957376 B = 3249.440778 C = 4371.575608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.281 3.719 3 C 0.017 3.983 4 C -0.084 4.084 5 C -0.030 4.030 6 C -0.156 4.156 7 C 0.381 3.619 8 O -0.496 6.496 9 C -0.126 4.126 10 S 0.119 5.881 11 C -0.386 4.386 12 C 0.047 3.953 13 C -0.470 4.470 14 H 0.073 0.927 15 C 0.031 3.969 16 N -0.829 5.829 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.260 1.260 20 H -0.266 1.266 21 C -0.073 4.073 22 H 0.178 0.822 23 H 0.213 0.787 24 H 0.182 0.818 25 H 0.132 0.868 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.659 -13.561 2.478 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.033 4.033 3 C 0.012 3.988 4 C -0.108 4.108 5 C -0.049 4.049 6 C -0.164 4.164 7 C 0.242 3.758 8 O -0.371 6.371 9 C -0.244 4.244 10 S 0.385 5.615 11 C -0.522 4.522 12 C 0.038 3.962 13 C -0.503 4.503 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.456 5.456 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.184 1.184 20 H -0.190 1.190 21 C -0.086 4.086 22 H 0.196 0.804 23 H 0.229 0.771 24 H 0.198 0.802 25 H 0.150 0.850 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.628 -12.012 2.139 14.389 hybrid contribution -2.458 0.870 -0.156 2.612 sum 5.170 -11.143 1.983 12.443 Atomic orbital electron populations 1.81071 1.13195 1.09675 1.09682 1.25867 0.93146 0.91524 0.92741 1.16324 0.83478 0.94965 1.04071 1.21348 0.95315 0.95622 0.98513 1.21707 0.92471 0.97424 0.93302 1.21103 0.98067 0.92318 1.04947 1.24993 0.86789 0.92929 0.71105 1.90553 1.70235 1.39678 1.36677 1.23148 0.95607 0.99723 1.05873 1.82321 1.06844 1.01114 1.71235 1.24574 0.96134 1.05899 1.25623 1.17698 0.94565 0.89288 0.94623 1.19342 0.92259 0.94283 1.44445 0.90918 1.26485 1.03317 0.95917 0.92514 1.69926 1.38036 1.03066 1.34605 0.85434 0.77745 0.78626 0.79447 1.19246 1.18368 1.18979 1.19602 0.92687 0.94333 1.01944 0.80422 0.77066 0.80214 0.85036 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.04 17.80 19.00 0.34 -19.70 15 2 C 0.28 11.37 12.79 88.33 1.13 12.50 15 3 C 0.02 0.60 5.78 -20.94 -0.12 0.48 15 4 C -0.08 -1.84 9.68 22.38 0.22 -1.62 15 5 C -0.03 -0.49 9.74 22.47 0.22 -0.27 15 6 C -0.16 -4.08 5.90 -19.91 -0.12 -4.19 15 7 C 0.38 7.97 11.43 70.08 0.80 8.77 15 8 O -0.50 -15.80 15.74 -3.08 -0.05 -15.85 15 9 C -0.13 -5.02 6.31 23.29 0.15 -4.87 15 10 S 0.12 5.39 21.03 -56.49 -1.19 4.20 15 11 C -0.39 -21.00 9.49 67.41 0.64 -20.36 15 12 C 0.05 2.56 5.66 -20.90 -0.12 2.44 15 13 C -0.47 -26.47 8.36 23.28 0.19 -26.28 15 14 H 0.07 4.04 5.32 -2.91 -0.02 4.03 15 15 C 0.03 1.69 5.36 85.17 0.46 2.14 15 16 N -0.83 -46.33 10.93 21.80 0.24 -46.09 15 17 Si 0.97 42.79 29.57 68.60 2.03 44.82 15 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 21 C -0.07 -3.27 6.00 -20.03 -0.12 -3.39 15 22 H 0.18 2.37 8.06 -2.91 -0.02 2.35 15 23 H 0.21 0.54 8.06 -2.91 -0.02 0.52 15 24 H 0.18 1.13 8.06 -2.91 -0.02 1.10 15 25 H 0.13 7.78 6.45 -2.91 -0.02 7.76 15 26 H 0.28 14.49 8.30 -92.71 -0.77 13.72 15 Total: -1.00 -75.77 257.12 5.94 -69.83 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: 1.25 Total: -2.55 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.33 Total: -34.66 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: 0.58 Total: -65.80 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.05 Total: -15.85 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.19 Total: 4.20 kcal Total: -75.77 5.94 -69.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278517.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.156 kcal (2) G-P(sol) polarization free energy of solvation -75.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds