Wall clock time and date at job start Mon Mar 30 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38515 * 120.12697 * 352.10695 * 3 2 1 5 5 C 1.40497 * 120.44401 * 179.97438 * 4 3 2 6 6 C 1.46536 * 129.16160 * 180.02562 * 5 4 3 7 7 C 1.40764 * 123.28365 * 359.96099 * 6 5 4 8 8 H 1.08002 * 119.99748 * 339.17300 * 7 6 5 9 9 C 1.39810 * 120.00015 * 159.17663 * 7 6 5 10 10 N 1.31004 * 120.00086 * 344.94302 * 9 7 6 11 11 Si 1.86804 * 119.99834 * 164.95398 * 9 7 6 12 12 H 1.48498 * 109.46945 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47310 * 119.99571 * 11 9 7 14 14 H 1.48502 * 109.46566 * 239.99482 * 11 9 7 15 15 C 1.36635 * 113.43664 * 180.02562 * 6 5 4 16 16 S 1.69945 * 112.01494 * 359.97438 * 15 6 5 17 17 C 1.39858 * 119.68097 * 359.97438 * 5 4 3 18 18 C 1.39595 * 119.98773 * 359.97438 * 17 5 4 19 19 C 1.39046 * 120.46242 * 359.74263 * 18 17 5 20 20 C 1.46774 * 120.16524 * 180.27646 * 19 18 17 21 21 O 1.21315 * 119.99730 * 0.23492 * 20 19 18 22 22 H 1.07994 * 119.77657 * 359.95538 * 4 3 2 23 23 H 0.97001 * 119.99582 * 180.02562 * 10 9 7 24 24 H 1.08003 * 123.99268 * 180.02562 * 15 6 5 25 25 H 1.08003 * 119.76621 * 180.02562 * 18 17 5 26 26 H 1.07999 * 119.99789 * 180.23343 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 -1.1857 0.1645 5 6 4.6687 -1.1929 0.1651 6 6 5.5883 -2.3230 0.3212 7 6 5.1569 -3.6502 0.5058 8 1 4.1596 -3.8480 0.8699 9 6 6.0195 -4.7121 0.2180 10 7 7.1017 -4.5034 -0.4902 11 14 5.6288 -6.4285 0.8430 12 1 4.3591 -6.3980 1.6124 13 1 5.4878 -7.3547 -0.3091 14 1 6.7294 -6.8972 1.7230 15 6 6.9054 -1.9628 0.2715 16 16 7.1002 -0.2906 0.0398 17 6 5.3674 0.0070 -0.0024 18 6 4.6686 1.2039 -0.1694 19 6 3.2782 1.2133 -0.1763 20 6 2.5501 2.4746 -0.3585 21 8 3.1614 3.5117 -0.5079 22 1 2.7226 -2.1114 0.2936 23 1 7.7000 -5.2403 -0.6902 24 1 7.7257 -2.6588 0.3672 25 1 5.2118 2.1284 -0.2988 26 1 1.4701 2.4793 -0.3596 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396278985.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:40 Heat of formation + Delta-G solvation = 23.949098 kcal Electronic energy + Delta-G solvation = -15211.962035 eV Core-core repulsion = 12539.774035 eV Total energy + Delta-G solvation = -2672.188000 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68446 -38.13752 -36.49310 -35.00171 -32.65825 -30.90840 -29.19154 -26.44754 -24.64272 -23.25336 -21.08722 -20.41243 -18.11249 -17.29272 -16.53787 -15.93170 -15.63432 -14.72867 -14.36456 -14.30437 -13.88192 -13.47340 -13.26422 -13.06989 -12.68304 -12.59452 -12.19839 -11.90372 -11.62833 -11.25808 -10.88599 -10.75230 -10.36396 -10.17678 -9.75834 -9.64130 -9.44830 -8.93680 -7.79237 -7.08757 -6.89363 -4.53381 0.61031 1.28170 2.43156 2.45918 2.80842 2.84390 2.99500 3.03747 3.08446 3.46581 3.63418 3.82448 4.09503 4.22501 4.36441 5.03210 5.08242 5.28805 5.61661 5.71999 5.94732 6.18860 6.28106 6.49868 6.64589 6.95579 7.03221 7.39892 7.47191 7.63707 7.68590 8.17483 8.51408 8.63477 10.04741 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.006798 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.500120 B = 4117.655068 C = 5251.463576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.267 3.733 3 C -0.028 4.028 4 C -0.019 4.019 5 C -0.041 4.041 6 C 0.078 3.922 7 C -0.435 4.435 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.791 5.791 11 Si 0.912 3.088 12 H -0.260 1.260 13 H -0.274 1.274 14 H -0.272 1.272 15 C -0.348 4.348 16 S 0.090 5.910 17 C -0.152 4.152 18 C -0.014 4.014 19 C -0.166 4.166 20 C 0.387 3.613 21 O -0.465 6.465 22 H 0.135 0.865 23 H 0.281 0.719 24 H 0.166 0.834 25 H 0.135 0.865 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 3.898 0.968 4.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.047 4.047 3 C -0.037 4.037 4 C -0.042 4.042 5 C -0.054 4.054 6 C 0.070 3.930 7 C -0.467 4.467 8 H 0.098 0.902 9 C -0.146 4.146 10 N -0.417 5.417 11 Si 0.736 3.264 12 H -0.183 1.183 13 H -0.199 1.199 14 H -0.197 1.197 15 C -0.484 4.484 16 S 0.358 5.642 17 C -0.269 4.269 18 C -0.037 4.037 19 C -0.173 4.173 20 C 0.247 3.753 21 O -0.340 6.340 22 H 0.153 0.847 23 H 0.092 0.908 24 H 0.184 0.816 25 H 0.153 0.847 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.605 5.134 0.667 5.420 hybrid contribution -0.834 -2.145 0.303 2.322 sum -2.439 2.988 0.970 3.978 Atomic orbital electron populations 1.81215 1.11918 1.07802 1.10214 1.25664 0.92541 0.93328 0.93134 1.15566 0.83658 0.94136 1.10297 1.20833 0.92631 0.96164 0.94567 1.19776 0.92853 0.93543 0.99197 1.17329 0.89047 0.91551 0.95041 1.19021 1.00321 0.89097 1.38232 0.90150 1.25812 0.94459 1.01507 0.92829 1.69810 1.10911 1.34226 1.26744 0.86181 0.79800 0.80928 0.79446 1.18333 1.19939 1.19705 1.24587 1.01249 0.95232 1.27356 1.82079 0.99598 1.06675 1.75870 1.22954 0.99656 0.96414 1.07836 1.20585 0.92022 0.96360 0.94745 1.20179 0.93884 0.93986 1.09212 1.23789 0.94618 0.86399 0.70526 1.90509 1.73125 1.34746 1.35574 0.84676 0.90828 0.81642 0.84750 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.00 18.54 41.84 0.78 -6.22 15 2 C 0.27 4.02 13.93 -22.47 -0.31 3.70 15 3 C -0.03 -0.43 5.76 -106.57 -0.61 -1.04 15 4 C -0.02 -0.33 9.52 -38.63 -0.37 -0.70 15 5 C -0.04 -0.83 6.02 -105.10 -0.63 -1.46 15 6 C 0.08 1.82 5.69 -106.18 -0.60 1.22 15 7 C -0.43 -10.23 9.04 -38.04 -0.34 -10.57 15 8 H 0.08 1.78 7.61 -52.49 -0.40 1.38 15 9 C 0.07 1.64 5.31 -17.32 -0.09 1.55 15 10 N -0.79 -18.87 10.89 55.54 0.61 -18.26 15 11 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 15 12 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 13 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 14 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 15 C -0.35 -7.98 9.52 30.15 0.29 -7.69 15 16 S 0.09 1.72 22.96 -107.50 -2.47 -0.74 15 17 C -0.15 -2.87 6.43 -38.47 -0.25 -3.12 15 18 C -0.01 -0.23 9.61 -38.78 -0.37 -0.61 15 19 C -0.17 -2.54 5.89 -104.85 -0.62 -3.16 15 20 C 0.39 5.39 11.00 34.18 0.38 5.76 15 21 O -0.47 -7.62 17.14 5.53 0.09 -7.52 15 22 H 0.14 2.20 7.77 -52.49 -0.41 1.79 15 23 H 0.28 6.12 8.30 -40.82 -0.34 5.78 15 24 H 0.17 4.06 6.31 -52.48 -0.33 3.73 15 25 H 0.13 2.05 7.61 -52.48 -0.40 1.65 15 26 H 0.09 1.09 7.20 -52.49 -0.38 0.71 15 LS Contribution 262.94 15.07 3.96 3.96 Total: -1.00 -24.91 262.94 -6.65 -31.56 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -1.05 Total: 1.03 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.54 Total: -16.12 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 1.38 Total: -24.49 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.74 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -24.91 -6.65 -31.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278985.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.513 kcal (2) G-P(sol) polarization free energy of solvation -24.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds