Wall clock time and date at job start Mon Mar 30 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38515 * 120.12697 * 352.10695 * 3 2 1 5 5 C 1.40497 * 120.44401 * 179.97438 * 4 3 2 6 6 C 1.46536 * 129.16160 * 180.02562 * 5 4 3 7 7 C 1.40764 * 123.28365 * 359.96099 * 6 5 4 8 8 H 1.08002 * 119.99748 * 339.17300 * 7 6 5 9 9 C 1.39810 * 120.00015 * 159.17663 * 7 6 5 10 10 N 1.31004 * 120.00086 * 344.94302 * 9 7 6 11 11 Si 1.86804 * 119.99834 * 164.95398 * 9 7 6 12 12 H 1.48498 * 109.46945 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47310 * 119.99571 * 11 9 7 14 14 H 1.48502 * 109.46566 * 239.99482 * 11 9 7 15 15 C 1.36635 * 113.43664 * 180.02562 * 6 5 4 16 16 S 1.69945 * 112.01494 * 359.97438 * 15 6 5 17 17 C 1.39858 * 119.68097 * 359.97438 * 5 4 3 18 18 C 1.39595 * 119.98773 * 359.97438 * 17 5 4 19 19 C 1.39046 * 120.46242 * 359.74263 * 18 17 5 20 20 C 1.46774 * 120.16524 * 180.27646 * 19 18 17 21 21 O 1.21315 * 119.99730 * 0.23492 * 20 19 18 22 22 H 1.07994 * 119.77657 * 359.95538 * 4 3 2 23 23 H 0.97001 * 119.99582 * 180.02562 * 10 9 7 24 24 H 1.08003 * 123.99268 * 180.02562 * 15 6 5 25 25 H 1.08003 * 119.76621 * 180.02562 * 18 17 5 26 26 H 1.07999 * 119.99789 * 180.23343 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 -1.1857 0.1645 5 6 4.6687 -1.1929 0.1651 6 6 5.5883 -2.3230 0.3212 7 6 5.1569 -3.6502 0.5058 8 1 4.1596 -3.8480 0.8699 9 6 6.0195 -4.7121 0.2180 10 7 7.1017 -4.5034 -0.4902 11 14 5.6288 -6.4285 0.8430 12 1 4.3591 -6.3980 1.6124 13 1 5.4878 -7.3547 -0.3091 14 1 6.7294 -6.8972 1.7230 15 6 6.9054 -1.9628 0.2715 16 16 7.1002 -0.2906 0.0398 17 6 5.3674 0.0070 -0.0024 18 6 4.6686 1.2039 -0.1694 19 6 3.2782 1.2133 -0.1763 20 6 2.5501 2.4746 -0.3585 21 8 3.1614 3.5117 -0.5079 22 1 2.7226 -2.1114 0.2936 23 1 7.7000 -5.2403 -0.6902 24 1 7.7257 -2.6588 0.3672 25 1 5.2118 2.1284 -0.2988 26 1 1.4701 2.4793 -0.3596 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396278985.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:40 Heat of formation + Delta-G solvation = 12.378323 kcal Electronic energy + Delta-G solvation = -15212.463782 eV Core-core repulsion = 12539.774035 eV Total energy + Delta-G solvation = -2672.689746 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02660 -39.47634 -37.85106 -36.54421 -34.25602 -32.30128 -30.69938 -28.13693 -26.00901 -24.66966 -22.57252 -21.84938 -19.52452 -18.75429 -18.17278 -17.25152 -17.13870 -16.23538 -15.65075 -15.64031 -15.21671 -14.74756 -14.71642 -14.53862 -14.13290 -14.01999 -13.64058 -13.38855 -13.23952 -12.79962 -12.47033 -12.29821 -11.85566 -11.68561 -11.29744 -11.06631 -10.91352 -10.41375 -9.32393 -8.70879 -8.54823 -6.28756 -0.72735 -0.10024 0.96654 1.05861 1.36839 1.42891 1.54646 1.55773 1.78012 1.84482 2.08112 2.23416 2.75892 2.82050 3.17948 3.32656 3.76142 4.02033 4.19352 4.37567 4.55416 4.82719 4.92904 5.08551 5.16427 5.24241 5.53949 5.72364 5.93620 6.30842 6.38321 6.44948 6.79828 6.90894 8.36507 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.006798 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.500120 B = 4117.655068 C = 5251.463576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.284 3.716 3 C -0.004 4.004 4 C -0.023 4.023 5 C -0.065 4.065 6 C 0.058 3.942 7 C -0.463 4.463 8 H 0.086 0.914 9 C 0.032 3.968 10 N -0.824 5.824 11 Si 0.979 3.021 12 H -0.254 1.254 13 H -0.271 1.271 14 H -0.271 1.271 15 C -0.382 4.382 16 S 0.113 5.887 17 C -0.154 4.154 18 C -0.017 4.017 19 C -0.151 4.151 20 C 0.401 3.599 21 O -0.483 6.483 22 H 0.143 0.857 23 H 0.285 0.715 24 H 0.141 0.859 25 H 0.150 0.850 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 4.871 1.058 6.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.030 4.030 3 C -0.013 4.013 4 C -0.045 4.045 5 C -0.077 4.077 6 C 0.049 3.951 7 C -0.495 4.495 8 H 0.104 0.896 9 C -0.183 4.183 10 N -0.451 5.451 11 Si 0.801 3.199 12 H -0.177 1.177 13 H -0.196 1.196 14 H -0.196 1.196 15 C -0.519 4.519 16 S 0.380 5.620 17 C -0.271 4.271 18 C -0.040 4.040 19 C -0.158 4.158 20 C 0.261 3.739 21 O -0.358 6.358 22 H 0.161 0.839 23 H 0.096 0.904 24 H 0.158 0.842 25 H 0.168 0.832 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.627 6.123 0.757 7.157 hybrid contribution -0.338 -2.297 0.251 2.335 sum -3.965 3.826 1.008 5.601 Atomic orbital electron populations 1.81266 1.12090 1.08077 1.10192 1.25285 0.91934 0.92998 0.92811 1.15426 0.83816 0.93480 1.08536 1.20882 0.91619 0.97349 0.94657 1.19780 0.93932 0.93053 1.00973 1.17692 0.89920 0.92605 0.94880 1.19355 1.00967 0.89958 1.39260 0.89613 1.26629 0.94127 1.04993 0.92553 1.69901 1.11919 1.35434 1.27859 0.85177 0.79595 0.76350 0.78799 1.17729 1.19563 1.19596 1.24467 1.00817 0.97321 1.29254 1.81716 1.00043 1.03697 1.76521 1.23127 0.99400 0.96951 1.07607 1.20754 0.92628 0.95957 0.94646 1.20474 0.93523 0.94791 1.06982 1.24090 0.95654 0.84963 0.69191 1.90528 1.73765 1.35254 1.36230 0.83878 0.90450 0.84185 0.83193 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.62 18.54 19.00 0.35 -12.26 15 2 C 0.28 7.53 13.93 88.33 1.23 8.76 15 3 C 0.00 -0.11 5.76 -21.13 -0.12 -0.24 15 4 C -0.02 -0.75 9.52 22.89 0.22 -0.54 15 5 C -0.07 -2.64 6.02 -20.17 -0.12 -2.76 15 6 C 0.06 2.76 5.69 -20.87 -0.12 2.64 15 7 C -0.46 -22.39 9.04 23.27 0.21 -22.18 15 8 H 0.09 3.87 7.61 -2.91 -0.02 3.84 15 9 C 0.03 1.48 5.31 85.20 0.45 1.93 15 10 N -0.82 -40.88 10.89 21.81 0.24 -40.64 15 11 Si 0.98 35.99 29.59 68.60 2.03 38.02 15 12 H -0.25 -8.98 7.11 99.48 0.71 -8.27 15 13 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 14 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 15 C -0.38 -18.34 9.52 67.44 0.64 -17.70 15 16 S 0.11 4.40 22.96 -56.49 -1.30 3.10 15 17 C -0.15 -5.72 6.43 22.99 0.15 -5.57 15 18 C -0.02 -0.52 9.61 22.79 0.22 -0.30 15 19 C -0.15 -4.13 5.89 -20.01 -0.12 -4.25 15 20 C 0.40 9.50 11.00 70.05 0.77 10.27 15 21 O -0.48 -14.08 17.14 -3.14 -0.05 -14.14 15 22 H 0.14 4.49 7.77 -2.91 -0.02 4.47 15 23 H 0.28 12.90 8.30 -92.71 -0.77 12.13 15 24 H 0.14 7.34 6.31 -2.91 -0.02 7.32 15 25 H 0.15 4.18 7.61 -2.91 -0.02 4.15 15 26 H 0.13 2.32 7.20 -2.91 -0.02 2.30 15 Total: -1.00 -53.93 262.94 5.92 -48.01 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.25 Total: 7.85 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.41 Total: -29.93 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.59 Total: -52.91 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.05 Total: -14.14 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.30 Total: 3.10 kcal Total: -53.93 5.92 -48.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396278985.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.387 kcal (2) G-P(sol) polarization free energy of solvation -53.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds