Wall clock time and date at job start Mon Mar 30 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40075 * 120.09729 * 27.16634 * 3 2 1 5 5 C 1.35975 * 120.25390 * 180.02562 * 4 3 2 6 6 C 1.41037 * 120.81188 * 0.25721 * 5 4 3 7 7 C 1.39516 * 119.27779 * 359.51149 * 6 5 4 8 8 C 1.38925 * 120.09410 * 207.18605 * 3 2 1 9 9 S 1.75869 * 110.84785 * 180.26901 * 7 6 5 10 10 C 1.75167 * 92.84149 * 359.74314 * 9 7 6 11 11 C 1.41153 * 124.63408 * 179.97438 * 10 9 7 12 12 O 1.21498 * 119.99923 * 175.16635 * 11 10 9 13 13 C 1.38912 * 110.72258 * 0.37878 * 10 9 7 14 14 C 1.39556 * 123.34622 * 179.61623 * 13 10 9 15 15 H 1.08004 * 119.99511 * 321.91157 * 14 13 10 16 16 C 1.40719 * 120.00013 * 141.90850 * 14 13 10 17 17 N 1.30423 * 120.00024 * 339.57839 * 16 14 13 18 18 Si 1.86803 * 120.00029 * 159.57607 * 16 14 13 19 19 H 1.48500 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47174 * 120.00230 * 18 16 14 21 21 H 1.48499 * 109.46964 * 240.00292 * 18 16 14 22 22 H 1.08000 * 119.87480 * 359.97438 * 4 3 2 23 23 H 1.07998 * 119.59035 * 179.97438 * 5 4 3 24 24 H 1.08003 * 119.89432 * 359.97438 * 8 3 2 25 25 H 1.07999 * 120.00088 * 355.17099 * 11 10 9 26 26 H 0.97000 * 120.00045 * 176.77235 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -1.0773 -0.5533 5 6 4.6307 -1.0802 -0.5546 6 6 5.3559 -0.0067 0.0029 7 6 4.6631 1.0729 0.5515 8 6 3.2641 1.0701 0.5492 9 16 5.7789 2.2818 1.1732 10 6 7.1863 1.3474 0.7102 11 6 8.5222 1.7498 0.9240 12 8 9.4350 0.9966 0.6486 13 6 6.8078 0.1604 0.0958 14 6 7.7205 -0.7796 -0.3848 15 1 8.6330 -0.4519 -0.8605 16 6 7.4517 -2.1543 -0.2495 17 7 6.5937 -2.5663 0.6421 18 14 8.3239 -3.3889 -1.3471 19 1 9.2406 -2.6709 -2.2687 20 1 9.1044 -4.3328 -0.5075 21 1 7.3193 -4.1442 -2.1380 22 1 2.7309 -1.9096 -0.9799 23 1 5.1618 -1.9170 -0.9836 24 1 2.7236 1.9020 0.9761 25 1 8.7331 2.7271 1.3325 26 1 6.3735 -3.5090 0.7039 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396279010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:37 Heat of formation + Delta-G solvation = 10.072816 kcal Electronic energy + Delta-G solvation = -15580.497085 eV Core-core repulsion = 12907.707364 eV Total energy + Delta-G solvation = -2672.789721 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59816 -39.22690 -37.75303 -36.41684 -34.54534 -31.91733 -31.00550 -28.88323 -25.88068 -24.01526 -23.07288 -20.82330 -20.04151 -19.06931 -17.72885 -17.14618 -16.46640 -16.21603 -15.77718 -15.20380 -14.96643 -14.90641 -14.76441 -14.32758 -14.11236 -13.80336 -13.75933 -13.46929 -13.23780 -12.96842 -12.45428 -12.32554 -11.84813 -11.58802 -11.30134 -11.00391 -10.38813 -10.04888 -9.31320 -9.08226 -8.47949 -6.60810 -0.56699 0.39328 0.77104 1.01927 1.36721 1.44824 1.52925 1.63068 1.74632 2.01734 2.14951 2.32285 2.79462 2.85630 3.18089 3.85657 3.96215 4.21006 4.30312 4.49708 4.70518 4.89284 4.94644 5.12366 5.28212 5.43325 5.47703 5.80464 5.84074 6.19065 6.36395 6.41920 6.56109 7.33711 7.90462 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.009352 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.374744 B = 2993.438539 C = 4412.769540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.292 3.708 3 C -0.019 4.019 4 C -0.088 4.088 5 C -0.053 4.053 6 C -0.047 4.047 7 C -0.130 4.130 8 C -0.042 4.042 9 S 0.042 5.958 10 C -0.486 4.486 11 C 0.381 3.619 12 O -0.561 6.561 13 C 0.125 3.875 14 C -0.378 4.378 15 H 0.087 0.913 16 C 0.044 3.956 17 N -0.754 5.754 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.236 1.236 22 H 0.158 0.842 23 H 0.128 0.872 24 H 0.152 0.848 25 H 0.083 0.917 26 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -0.850 -2.446 5.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.023 4.023 3 C -0.025 4.025 4 C -0.111 4.111 5 C -0.073 4.073 6 C -0.057 4.057 7 C -0.245 4.245 8 C -0.069 4.069 9 S 0.301 5.699 10 C -0.601 4.601 11 C 0.256 3.744 12 O -0.451 6.451 13 C 0.116 3.884 14 C -0.406 4.406 15 H 0.105 0.895 16 C -0.181 4.181 17 N -0.376 5.376 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.159 1.159 22 H 0.175 0.825 23 H 0.146 0.854 24 H 0.170 0.830 25 H 0.099 0.901 26 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.315 0.021 -1.693 6.538 hybrid contribution 1.230 -1.515 -0.702 2.074 sum -5.085 -1.493 -2.395 5.816 Atomic orbital electron populations 1.81228 1.12575 1.09109 1.10346 1.25465 0.92117 0.92394 0.92288 1.15603 0.83611 0.97474 1.05832 1.20766 0.93110 0.97803 0.99471 1.20776 0.93292 0.96400 0.96825 1.19876 0.93302 0.94571 0.97920 1.22671 0.97264 0.99900 1.04658 1.20621 0.90124 0.98049 0.98072 1.82549 0.95042 1.22684 1.69641 1.23017 0.98366 1.08231 1.30522 1.21028 0.86289 0.90430 0.76657 1.90423 1.48404 1.56915 1.49333 1.18069 0.90542 0.92209 0.87626 1.19897 1.04107 0.91065 1.25543 0.89473 1.26986 0.95130 1.00658 0.95345 1.69643 1.23906 1.20776 1.23306 0.85219 0.79709 0.76912 0.78616 1.18827 1.18877 1.15905 0.82484 0.85397 0.82988 0.90132 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.00 18.54 19.00 0.35 -13.64 15 2 C 0.29 8.13 15.32 88.33 1.35 9.49 15 3 C -0.02 -0.55 5.72 -21.42 -0.12 -0.68 15 4 C -0.09 -2.55 9.67 22.19 0.21 -2.33 15 5 C -0.05 -1.92 8.33 22.43 0.19 -1.73 15 6 C -0.05 -1.99 5.56 -20.15 -0.11 -2.10 15 7 C -0.13 -4.94 6.41 22.98 0.15 -4.79 15 8 C -0.04 -1.29 9.78 22.84 0.22 -1.07 15 9 S 0.04 1.64 23.11 -56.49 -1.31 0.33 15 10 C -0.49 -23.13 6.24 23.15 0.14 -22.98 15 11 C 0.38 18.13 11.41 68.54 0.78 18.91 15 12 O -0.56 -30.53 15.29 -3.71 -0.06 -30.59 15 13 C 0.12 6.11 5.41 -20.66 -0.11 5.99 15 14 C -0.38 -18.70 7.78 23.19 0.18 -18.52 15 15 H 0.09 4.64 6.75 -2.91 -0.02 4.62 15 16 C 0.04 1.87 4.00 85.51 0.34 2.21 15 17 N -0.75 -31.88 10.80 21.96 0.24 -31.64 15 18 Si 0.98 32.37 29.61 68.60 2.03 34.40 15 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 20 H -0.26 -8.66 7.11 99.48 0.71 -7.95 15 21 H -0.24 -6.76 7.11 99.48 0.71 -6.05 15 22 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 23 H 0.13 4.59 5.92 -2.91 -0.02 4.57 15 24 H 0.15 3.80 8.06 -2.91 -0.02 3.78 15 25 H 0.08 3.24 8.06 -2.91 -0.02 3.21 15 26 H 0.31 11.27 8.29 -92.71 -0.77 10.50 15 Total: -1.00 -56.90 259.44 5.73 -51.17 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.24 Total: 7.56 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.23 Total: -17.59 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.59 Total: -45.28 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 32.37 SS G_CDS: 2.03 Total: 34.40 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.31 Total: 0.33 kcal Total: -56.90 5.73 -51.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.243 kcal (2) G-P(sol) polarization free energy of solvation -56.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds