Wall clock time and date at job start Mon Mar 30 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39715 * 120.54476 * 99.41490 * 3 2 1 5 5 C 1.37155 * 120.44280 * 180.26048 * 4 3 2 6 6 C 1.41123 * 121.85015 * 359.76978 * 5 4 3 7 7 C 1.46610 * 128.94484 * 179.97438 * 6 5 4 8 8 C 1.41720 * 123.15873 * 0.02562 * 7 6 5 9 9 O 1.21405 * 120.00370 * 180.02562 * 8 7 6 10 10 C 1.35463 * 113.68834 * 180.02562 * 7 6 5 11 11 S 1.70003 * 111.97466 * 359.97438 * 10 7 6 12 12 C 1.39005 * 120.00064 * 359.97438 * 6 5 4 13 13 C 1.42334 * 119.69038 * 359.97438 * 12 6 5 14 14 C 1.40288 * 120.44570 * 179.97438 * 13 12 6 15 15 H 1.08001 * 120.00166 * 142.97128 * 14 13 12 16 16 C 1.40332 * 120.00301 * 322.97513 * 14 13 12 17 17 N 1.30634 * 119.99499 * 333.40603 * 16 14 13 18 18 Si 1.86803 * 120.00164 * 153.40565 * 16 14 13 19 19 H 1.48505 * 109.46705 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47184 * 300.00243 * 18 16 14 21 21 H 1.48493 * 109.46923 * 60.00324 * 18 16 14 22 22 H 1.08001 * 119.78019 * 359.97438 * 4 3 2 23 23 H 1.08006 * 119.07650 * 179.75646 * 5 4 3 24 24 H 1.08005 * 119.99748 * 0.02562 * 8 7 6 25 25 H 1.08004 * 124.01557 * 180.02562 * 10 7 6 26 26 H 0.96993 * 120.00331 * 353.08641 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2780 0.1978 -1.1871 5 6 4.6495 0.1927 -1.1855 6 6 5.3922 -0.0041 -0.0018 7 6 6.8468 -0.0393 0.1784 8 6 7.7643 0.1323 -0.8879 9 8 8.9586 0.0920 -0.6735 10 6 7.2314 -0.2513 1.4599 11 16 5.9004 -0.4171 2.5045 12 6 4.7343 -0.1996 1.2070 13 6 3.3115 -0.1994 1.2434 14 6 2.6313 -0.3957 2.4546 15 1 1.7188 0.1460 2.6555 16 6 3.1365 -1.2959 3.4052 17 7 3.8799 -2.3000 3.0234 18 14 2.7461 -1.0584 5.2165 19 1 3.3942 -2.1350 6.0078 20 1 3.2585 0.2615 5.6644 21 1 1.2758 -1.1126 5.4171 22 1 2.7432 0.3506 -2.1129 23 1 5.1760 0.3434 -2.1165 24 1 7.4011 0.2990 -1.8913 25 1 8.2613 -0.3075 1.7801 26 1 4.0005 -2.4824 2.0784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396279024.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:36 Heat of formation + Delta-G solvation = 2.666928 kcal Electronic energy + Delta-G solvation = -15634.558319 eV Core-core repulsion = 12961.447455 eV Total energy + Delta-G solvation = -2673.110864 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63482 -39.44429 -37.31861 -36.52234 -35.02569 -31.69598 -30.37970 -27.84798 -26.64352 -24.08929 -23.09428 -20.79093 -20.46021 -19.01985 -18.05831 -16.89449 -16.69549 -15.99861 -15.90441 -15.45003 -15.41272 -14.92158 -14.67065 -14.44610 -14.01168 -13.67717 -13.60348 -13.28435 -13.06791 -12.56835 -12.48034 -12.06868 -11.92602 -11.76312 -11.43433 -10.90824 -10.64599 -10.32038 -9.58040 -9.32350 -8.47577 -6.77158 -0.48812 0.27831 0.74354 0.79631 1.29640 1.47990 1.54316 1.75585 1.85461 2.01519 2.20438 2.43847 2.54971 3.32180 3.50616 3.72964 3.78684 4.23550 4.41642 4.55393 4.66981 4.92148 5.01241 5.10813 5.29243 5.54311 5.55749 5.69824 5.82087 6.06737 6.39591 6.46928 6.59665 6.90035 7.74227 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.010293 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.979306 B = 2719.613196 C = 4129.558298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.307 3.693 3 C -0.206 4.206 4 C -0.003 4.003 5 C -0.216 4.216 6 C 0.018 3.982 7 C -0.239 4.239 8 C 0.412 3.588 9 O -0.517 6.517 10 C -0.167 4.167 11 S 0.228 5.772 12 C -0.272 4.272 13 C 0.155 3.845 14 C -0.519 4.519 15 H 0.075 0.925 16 C 0.013 3.987 17 N -0.753 5.753 18 Si 1.087 2.913 19 H -0.257 1.257 20 H -0.252 1.252 21 H -0.267 1.267 22 H 0.140 0.860 23 H 0.150 0.850 24 H 0.137 0.863 25 H 0.182 0.818 26 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.109 2.293 -1.058 6.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C -0.002 4.002 3 C -0.216 4.216 4 C -0.024 4.024 5 C -0.237 4.237 6 C 0.010 3.990 7 C -0.257 4.257 8 C 0.275 3.725 9 O -0.397 6.397 10 C -0.306 4.306 11 S 0.500 5.500 12 C -0.388 4.388 13 C 0.147 3.853 14 C -0.546 4.546 15 H 0.093 0.907 16 C -0.210 4.210 17 N -0.373 5.373 18 Si 0.904 3.096 19 H -0.181 1.181 20 H -0.176 1.176 21 H -0.191 1.191 22 H 0.158 0.842 23 H 0.168 0.832 24 H 0.153 0.847 25 H 0.199 0.801 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.225 1.354 2.131 5.803 hybrid contribution -0.181 0.709 -2.978 3.066 sum 5.044 2.063 -0.847 5.515 Atomic orbital electron populations 1.81028 1.13191 1.15945 1.10416 1.25807 0.92733 0.90738 0.90962 1.16906 0.83066 1.27101 0.94486 1.20705 0.93852 0.92487 0.95355 1.20268 0.92531 1.14470 0.96435 1.19140 0.90687 0.95579 0.93599 1.20044 0.93852 1.15312 0.96463 1.22524 0.86481 0.69350 0.94176 1.90501 1.20357 1.40535 1.88347 1.26256 1.06538 0.98730 0.99072 1.83191 0.91196 1.67027 1.08606 1.22911 0.97143 1.21240 0.97471 1.17931 0.88470 0.87696 0.91224 1.20746 1.10451 1.22568 1.00787 0.90653 1.28217 0.91148 0.91070 1.10574 1.70491 1.23714 1.20754 1.22317 0.83357 0.78350 0.79212 0.68708 1.18100 1.17565 1.19141 0.84224 0.83247 0.84711 0.80058 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.49 18.54 19.01 0.35 -24.14 15 2 C 0.31 13.69 14.45 88.33 1.28 14.97 15 3 C -0.21 -8.72 5.94 -19.59 -0.12 -8.83 15 4 C 0.00 -0.09 9.71 22.37 0.22 0.13 15 5 C -0.22 -6.86 9.76 22.72 0.22 -6.64 15 6 C 0.02 0.64 6.02 -20.20 -0.12 0.51 15 7 C -0.24 -7.88 5.83 -20.88 -0.12 -8.01 15 8 C 0.41 11.68 11.19 68.68 0.77 12.45 15 9 O -0.52 -17.55 17.36 -3.42 -0.06 -17.61 15 10 C -0.17 -5.53 10.32 67.18 0.69 -4.84 15 11 S 0.23 8.47 19.61 -56.49 -1.11 7.37 15 12 C -0.27 -11.26 5.32 23.47 0.12 -11.14 15 13 C 0.15 6.99 5.17 -19.68 -0.10 6.89 15 14 C -0.52 -24.27 8.21 23.28 0.19 -24.08 15 15 H 0.08 3.68 7.74 -2.91 -0.02 3.66 15 16 C 0.01 0.56 4.04 85.38 0.34 0.90 15 17 N -0.75 -33.78 11.43 21.89 0.25 -33.53 15 18 Si 1.09 37.70 30.01 68.60 2.06 39.76 15 19 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 20 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 21 H -0.27 -9.07 7.11 99.48 0.71 -8.36 15 22 H 0.14 3.89 8.06 -2.91 -0.02 3.87 15 23 H 0.15 3.47 7.48 -2.91 -0.02 3.45 15 24 H 0.14 2.69 7.45 -2.91 -0.02 2.67 15 25 H 0.18 5.28 7.91 -2.91 -0.02 5.26 15 26 H 0.29 13.69 7.28 -92.71 -0.68 13.02 15 Total: -1.00 -53.77 260.14 6.20 -47.57 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 1.33 Total: 8.27 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 3.38 Total: -27.68 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.60 Total: -57.67 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.06 Total: -17.61 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.06 Total: 39.76 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -1.11 Total: 7.37 kcal Total: -53.77 6.20 -47.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279024.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.232 kcal (2) G-P(sol) polarization free energy of solvation -53.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds