Wall clock time and date at job start Mon Mar 30 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.33519 * 124.36001 * 359.80142 * 3 2 1 5 5 C 1.45145 * 114.65002 * 180.02562 * 4 3 2 6 6 C 1.40733 * 128.89208 * 180.02562 * 5 4 3 7 7 C 1.39947 * 120.53784 * 179.97438 * 6 5 4 8 8 C 1.41378 * 119.93074 * 180.02562 * 7 6 5 9 9 H 1.08010 * 120.00100 * 334.55432 * 8 7 6 10 10 C 1.39847 * 120.00235 * 154.55625 * 8 7 6 11 11 N 1.30902 * 119.99441 * 342.47186 * 10 8 7 12 12 Si 1.86791 * 120.00216 * 162.46411 * 10 8 7 13 13 H 1.48504 * 109.47236 * 60.00361 * 12 10 8 14 14 H 1.48500 * 109.47468 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47594 * 300.00502 * 12 10 8 16 16 C 1.40756 * 120.13490 * 359.97438 * 7 6 5 17 17 C 1.38597 * 119.81655 * 0.02562 * 16 7 6 18 18 C 1.46816 * 119.84239 * 179.72304 * 17 16 7 19 19 O 1.21303 * 120.00340 * 359.97438 * 18 17 16 20 20 C 1.40252 * 111.90893 * 359.97438 * 5 4 3 21 21 S 1.75262 * 124.35152 * 179.80346 * 3 2 1 22 22 H 1.07996 * 122.67608 * 0.02562 * 4 3 2 23 23 H 1.08003 * 119.73194 * 359.93682 * 6 5 4 24 24 H 0.97004 * 119.99226 * 180.02562 * 11 10 8 25 25 H 1.08000 * 120.08560 * 180.02562 * 16 7 6 26 26 H 1.08011 * 119.99847 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3220 -1.1012 0.0038 5 6 4.7526 -0.8558 0.0036 6 6 5.8087 -1.7860 0.0065 7 6 7.1390 -1.3514 0.0051 8 6 8.1900 -2.2970 0.0075 9 1 8.0266 -3.2851 0.4121 10 6 9.4412 -1.9532 -0.5139 11 7 9.5591 -0.9137 -1.3008 12 14 10.9442 -2.9770 -0.0874 13 1 10.7371 -4.3747 -0.5444 14 1 12.1385 -2.4081 -0.7622 15 1 11.1521 -2.9627 1.3829 16 6 7.4327 0.0252 0.0003 17 6 6.4005 0.9501 -0.0026 18 6 6.7062 2.3860 -0.0015 19 8 7.8600 2.7606 0.0024 20 6 5.0483 0.5152 -0.0013 21 16 3.5563 1.4480 -0.0050 22 1 2.9011 -2.0958 0.0069 23 1 5.5908 -2.8438 0.0104 24 1 10.4269 -0.6754 -1.6627 25 1 8.4596 0.3596 -0.0012 26 1 5.9038 3.1090 -0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396279070.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:18 Heat of formation + Delta-G solvation = 13.536519 kcal Electronic energy + Delta-G solvation = -15175.868710 eV Core-core repulsion = 12503.229187 eV Total energy + Delta-G solvation = -2672.639523 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53252 -39.30256 -38.00738 -36.54514 -34.72782 -32.27805 -30.55784 -27.55687 -25.69967 -25.10694 -22.71281 -21.15420 -19.78006 -19.16182 -17.70679 -17.06585 -16.82208 -16.38125 -15.82732 -15.43878 -15.32640 -15.06574 -14.88065 -14.29813 -14.18252 -13.87284 -13.76089 -13.27128 -12.89982 -12.75687 -12.52560 -12.10122 -11.96634 -11.72284 -11.64113 -11.03100 -10.63830 -10.26805 -9.32353 -8.82128 -8.55795 -6.38262 -0.46915 0.00795 0.30492 1.02677 1.03930 1.41803 1.48499 1.53778 1.75819 1.83045 2.18968 2.25456 2.63213 2.75996 3.40591 3.51192 4.07715 4.22611 4.51373 4.61541 4.77818 4.83597 4.98655 5.21280 5.33089 5.44855 5.55172 5.87300 6.05663 6.29570 6.42393 6.51160 6.75982 6.80895 8.23109 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.006130 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.442607 B = 4566.855691 C = 5464.861965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.309 3.691 3 C -0.138 4.138 4 C -0.024 4.024 5 C -0.067 4.067 6 C -0.177 4.177 7 C 0.066 3.934 8 C -0.482 4.482 9 H 0.092 0.908 10 C 0.034 3.966 11 N -0.822 5.822 12 Si 0.981 3.019 13 H -0.254 1.254 14 H -0.274 1.274 15 H -0.260 1.260 16 C -0.056 4.056 17 C -0.170 4.170 18 C 0.389 3.611 19 O -0.502 6.502 20 C -0.188 4.188 21 S 0.144 5.856 22 H 0.174 0.826 23 H 0.123 0.877 24 H 0.291 0.709 25 H 0.118 0.882 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 0.560 1.896 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.007 4.007 3 C -0.255 4.255 4 C -0.061 4.061 5 C -0.073 4.073 6 C -0.200 4.200 7 C 0.063 3.937 8 C -0.511 4.511 9 H 0.110 0.890 10 C -0.182 4.182 11 N -0.448 5.448 12 Si 0.802 3.198 13 H -0.178 1.178 14 H -0.199 1.199 15 H -0.184 1.184 16 C -0.077 4.077 17 C -0.176 4.176 18 C 0.251 3.749 19 O -0.379 6.379 20 C -0.305 4.305 21 S 0.407 5.593 22 H 0.191 0.809 23 H 0.141 0.859 24 H 0.102 0.898 25 H 0.135 0.865 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.525 2.468 1.735 7.188 hybrid contribution 1.609 -1.909 -0.065 2.497 sum -4.916 0.559 1.670 5.222 Atomic orbital electron populations 1.81268 1.11784 1.07942 1.10852 1.24323 0.90818 0.93150 0.92387 1.19095 0.88246 0.99582 1.18627 1.21411 0.90255 0.99450 0.94975 1.18941 0.92515 0.92199 1.03623 1.21138 0.90344 0.98034 1.10452 1.17700 0.93112 0.92283 0.90627 1.19861 0.95095 1.00452 1.35701 0.88990 1.26788 1.03385 0.96192 0.91843 1.69829 1.27979 1.25019 1.21926 0.85232 0.75818 0.79049 0.79680 1.17838 1.19879 1.18395 1.21908 0.98163 0.93283 0.94328 1.20097 0.91338 0.96213 1.09940 1.24335 0.91486 0.90356 0.68695 1.90483 1.26786 1.83216 1.37391 1.22545 0.95765 0.96650 1.15497 1.83336 0.92024 1.03784 1.80155 0.80851 0.85914 0.89777 0.86452 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.09 18.54 19.00 0.35 -12.73 15 2 C 0.31 8.34 15.73 88.33 1.39 9.73 15 3 C -0.14 -3.70 6.15 22.45 0.14 -3.56 15 4 C -0.02 -0.66 10.24 22.97 0.24 -0.42 15 5 C -0.07 -2.38 6.01 -20.41 -0.12 -2.50 15 6 C -0.18 -7.18 9.81 23.29 0.23 -6.95 15 7 C 0.07 3.12 5.54 -21.48 -0.12 3.00 15 8 C -0.48 -22.87 9.02 23.43 0.21 -22.65 15 9 H 0.09 4.08 7.90 -2.91 -0.02 4.05 15 10 C 0.03 1.57 5.13 85.22 0.44 2.00 15 11 N -0.82 -40.47 10.98 21.81 0.24 -40.23 15 12 Si 0.98 35.21 29.59 68.60 2.03 37.24 15 13 H -0.25 -8.69 7.11 99.48 0.71 -7.98 15 14 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 15 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 16 C -0.06 -2.66 8.19 22.97 0.19 -2.47 15 17 C -0.17 -6.95 5.89 -20.01 -0.12 -7.06 15 18 C 0.39 14.17 11.29 70.07 0.79 14.96 15 19 O -0.50 -21.93 17.11 -3.10 -0.05 -21.99 15 20 C -0.19 -6.75 6.39 23.70 0.15 -6.60 15 21 S 0.14 3.93 22.56 -56.49 -1.27 2.66 15 22 H 0.17 3.75 8.06 -2.91 -0.02 3.73 15 23 H 0.12 4.49 8.06 -2.91 -0.02 4.46 15 24 H 0.29 13.26 8.30 -92.71 -0.77 12.49 15 25 H 0.12 6.17 5.72 -2.91 -0.02 6.16 15 26 H 0.13 3.48 7.67 -2.91 -0.02 3.46 15 Total: -1.00 -54.52 265.19 5.95 -48.57 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.24 Total: 9.01 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.41 Total: -22.53 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.59 Total: -52.96 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.27 Total: 2.66 kcal Total: -54.52 5.95 -48.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279070.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.107 kcal (2) G-P(sol) polarization free energy of solvation -54.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds