Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39655 * 120.03603 * 85.18047 * 3 2 1 5 5 C 1.37389 * 120.99076 * 180.02562 * 4 3 2 6 6 C 1.39696 * 121.62872 * 359.95502 * 5 4 3 7 7 S 1.76068 * 130.11737 * 180.02562 * 6 5 4 8 8 C 1.75463 * 91.75827 * 180.02562 * 7 6 5 9 9 C 1.39600 * 124.86778 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00495 * 179.97438 * 9 8 7 11 11 C 1.40518 * 119.99996 * 359.97438 * 9 8 7 12 12 N 1.30554 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00211 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47070 * 89.99937 * 13 11 9 15 15 H 1.48499 * 109.47463 * 209.99743 * 13 11 9 16 16 H 1.48495 * 109.47231 * 330.00217 * 13 11 9 17 17 C 1.37384 * 110.27025 * 0.02562 * 8 7 6 18 18 C 1.38945 * 115.08121 * 359.97438 * 17 8 7 19 19 C 1.40506 * 120.03525 * 265.15737 * 3 2 1 20 20 C 1.46303 * 120.40321 * 0.02562 * 19 3 2 21 21 O 1.21376 * 119.99916 * 179.97438 * 20 19 3 22 22 H 1.08000 * 119.50487 * 359.97438 * 4 3 2 23 23 H 1.07998 * 119.18825 * 179.97438 * 5 4 3 24 24 H 0.97004 * 120.00116 * 180.02562 * 12 11 9 25 25 H 1.07992 * 122.45955 * 180.27155 * 17 8 7 26 26 H 1.07998 * 120.00176 * 359.97438 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -0.1006 -1.2047 5 6 4.6407 -0.1025 -1.2275 6 6 5.3930 -0.0028 -0.0546 7 16 7.1385 0.0174 0.1754 8 6 6.9618 0.1638 1.9150 9 6 8.0210 0.2411 2.8210 10 1 7.8216 0.3304 3.8787 11 6 9.3468 0.2027 2.3569 12 7 9.5879 0.0953 1.0783 13 14 10.7642 0.3069 3.5691 14 1 11.1409 -1.0606 4.0090 15 1 11.9290 0.9547 2.9143 16 1 10.3494 1.1093 4.7478 17 6 5.6317 0.1914 2.2577 18 6 4.7465 0.1012 1.1905 19 6 3.2712 0.1036 1.2120 20 6 2.5493 0.2102 2.4801 21 8 3.1642 0.2983 3.5229 22 1 2.7196 -0.1795 -2.1324 23 1 5.1517 -0.1826 -2.1756 24 1 10.5031 0.0684 0.7579 25 1 5.2986 0.2816 3.2810 26 1 1.4694 0.2104 2.4884 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396279184.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = 12.045398 kcal Electronic energy + Delta-G solvation = -15247.880620 eV Core-core repulsion = 12575.176437 eV Total energy + Delta-G solvation = -2672.704183 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00428 -37.29523 -36.29356 -35.22080 -33.43255 -30.71993 -29.43549 -26.21542 -23.91183 -23.17528 -20.76354 -20.01530 -18.07204 -17.39550 -16.57762 -15.82786 -15.20607 -14.49353 -13.92313 -13.90337 -13.59039 -13.38156 -13.13375 -13.07595 -12.43384 -12.35603 -12.03151 -11.88592 -11.73064 -11.57543 -10.87662 -10.67073 -10.56068 -10.44134 -9.64282 -9.37541 -8.87257 -8.65722 -7.70834 -7.54378 -6.72643 -4.97126 0.91343 1.68753 2.60517 2.67946 2.75761 2.94295 2.95738 3.09377 3.20297 3.34483 3.52692 3.59499 4.30439 4.38181 4.83485 4.89621 5.58238 5.60989 6.06867 6.15694 6.30175 6.41144 6.60882 6.74658 6.96334 7.12679 7.18480 7.36242 7.61792 7.76824 7.77797 7.98222 8.06432 8.21591 9.26318 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.036084 B = 0.006077 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.790026 B = 4606.768982 C = 5372.717238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.268 3.732 3 C 0.039 3.961 4 C -0.180 4.180 5 C -0.017 4.017 6 C -0.259 4.259 7 S 0.148 5.852 8 C 0.051 3.949 9 C -0.346 4.346 10 H 0.109 0.891 11 C 0.048 3.952 12 N -0.753 5.753 13 Si 0.944 3.056 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.252 1.252 17 C -0.343 4.343 18 C 0.067 3.933 19 C -0.208 4.208 20 C 0.372 3.628 21 O -0.467 6.467 22 H 0.117 0.883 23 H 0.114 0.886 24 H 0.309 0.691 25 H 0.132 0.868 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -0.215 -2.508 3.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.046 4.046 3 C 0.033 3.967 4 C -0.203 4.203 5 C -0.040 4.040 6 C -0.374 4.374 7 S 0.408 5.592 8 C -0.069 4.069 9 C -0.379 4.379 10 H 0.127 0.873 11 C -0.176 4.176 12 N -0.377 5.377 13 Si 0.766 3.234 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.175 1.175 17 C -0.366 4.366 18 C 0.058 3.942 19 C -0.214 4.214 20 C 0.234 3.766 21 O -0.343 6.343 22 H 0.135 0.865 23 H 0.132 0.868 24 H 0.122 0.878 25 H 0.150 0.850 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.883 -0.255 -3.062 3.604 hybrid contribution -0.303 0.087 1.087 1.132 sum 1.580 -0.169 -1.975 2.535 Atomic orbital electron populations 1.81166 1.12174 1.09980 1.08638 1.26025 0.92950 0.92980 0.92622 1.15750 0.82775 1.03665 0.94550 1.20136 0.93608 1.11316 0.95231 1.20137 0.92487 0.95540 0.95858 1.24011 1.02839 1.14340 0.96246 1.84927 0.93519 1.77792 1.02939 1.21708 0.95723 0.93995 0.95483 1.19679 0.88905 1.32933 0.96334 0.87343 1.26562 1.02119 0.92222 0.96746 1.68524 1.25379 1.28899 1.14941 0.85643 0.77596 0.80303 0.79906 1.18353 1.19209 1.17532 1.19962 0.90047 1.27430 0.99153 1.18704 0.90238 0.93069 0.92148 1.21189 0.92576 1.14833 0.92782 1.23376 0.93459 0.72315 0.87404 1.90469 1.72418 1.36420 1.34979 0.86501 0.86792 0.87753 0.84992 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.82 18.54 41.84 0.78 -7.04 15 2 C 0.27 4.55 13.91 -22.47 -0.31 4.24 15 3 C 0.04 0.69 5.76 -106.59 -0.61 0.08 15 4 C -0.18 -3.00 9.66 -39.36 -0.38 -3.38 15 5 C -0.02 -0.31 9.98 -39.35 -0.39 -0.70 15 6 C -0.26 -5.51 6.48 -38.12 -0.25 -5.76 15 7 S 0.15 3.22 20.14 -107.50 -2.16 1.05 15 8 C 0.05 1.21 6.12 -39.38 -0.24 0.97 15 9 C -0.35 -7.74 9.27 -38.21 -0.35 -8.10 15 10 H 0.11 2.31 7.85 -52.49 -0.41 1.90 15 11 C 0.05 0.98 5.50 -17.24 -0.09 0.88 15 12 N -0.75 -15.46 10.58 55.58 0.59 -14.87 15 13 Si 0.94 15.01 29.56 -169.99 -5.03 9.98 15 14 H -0.26 -4.10 7.11 56.52 0.40 -3.70 15 15 H -0.27 -4.12 7.11 56.52 0.40 -3.72 15 16 H -0.25 -4.03 7.11 56.52 0.40 -3.62 15 17 C -0.34 -8.32 9.44 -39.63 -0.37 -8.69 15 18 C 0.07 1.52 6.00 -104.92 -0.63 0.89 15 19 C -0.21 -4.23 6.11 -102.01 -0.62 -4.85 15 20 C 0.37 7.27 10.98 33.97 0.37 7.65 15 21 O -0.47 -10.51 15.24 5.47 0.08 -10.42 15 22 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 23 H 0.11 1.73 8.06 -52.49 -0.42 1.30 15 24 H 0.31 5.56 8.29 -40.82 -0.34 5.22 15 25 H 0.13 3.32 6.22 -52.49 -0.33 3.00 15 26 H 0.08 1.25 7.18 -52.49 -0.38 0.87 15 LS Contribution 260.25 15.07 3.92 3.92 Total: -1.00 -24.90 260.25 -6.81 -31.70 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -1.10 Total: 2.44 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -3.89 Total: -16.76 kcal Atomic # 7 Polarization: -23.28 SS G_CDS: 1.36 Total: -21.91 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 15.01 SS G_CDS: -5.03 Total: 9.98 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.16 Total: 1.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -24.90 -6.81 -31.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279184.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.748 kcal (2) G-P(sol) polarization free energy of solvation -24.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds