Wall clock time and date at job start Mon Mar 30 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39486 * 120.15825 * 53.17327 * 3 2 1 5 5 C 1.37440 * 120.36862 * 179.73272 * 4 3 2 6 6 C 1.40626 * 120.91479 * 0.52956 * 5 4 3 7 7 C 1.46636 * 129.32522 * 179.72619 * 6 5 4 8 8 C 1.40831 * 123.27107 * 0.03220 * 7 6 5 9 9 H 1.07995 * 119.99751 * 339.14240 * 8 7 6 10 10 C 1.39760 * 119.99670 * 159.14421 * 8 7 6 11 11 N 1.31031 * 120.00471 * 344.91186 * 10 8 7 12 12 Si 1.86806 * 119.99512 * 164.91002 * 10 8 7 13 13 H 1.48492 * 109.47295 * 90.00168 * 12 10 8 14 14 H 1.48501 * 109.46638 * 210.00224 * 12 10 8 15 15 H 1.48502 * 109.46899 * 329.99487 * 12 10 8 16 16 C 1.36440 * 113.45482 * 180.02562 * 7 6 5 17 17 S 1.69972 * 111.98589 * 0.02562 * 16 7 6 18 18 C 1.39566 * 119.54411 * 359.75881 * 6 5 4 19 19 C 1.40742 * 120.15469 * 233.45232 * 3 2 1 20 20 C 1.46719 * 120.07441 * 359.97438 * 19 3 2 21 21 O 1.21307 * 120.00279 * 180.02562 * 20 19 3 22 22 H 1.07995 * 119.81646 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.54477 * 180.28637 * 5 4 3 24 24 H 0.96998 * 120.00730 * 180.02562 * 11 10 8 25 25 H 1.07999 * 124.00625 * 180.02562 * 16 7 6 26 26 H 1.08005 * 120.00170 * 0.02562 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 -0.7220 -0.9654 5 6 4.6434 -0.7199 -0.9727 6 6 5.3700 -0.0024 -0.0059 7 6 6.8213 0.1227 0.1621 8 6 7.7542 -0.5051 -0.6858 9 1 7.4573 -1.3583 -1.2775 10 6 9.0643 -0.0241 -0.7612 11 7 9.3544 1.1634 -0.2894 12 14 10.4017 -1.0743 -1.5346 13 1 10.4767 -0.7876 -2.9897 14 1 11.7069 -0.7596 -0.9001 15 1 10.0845 -2.5103 -1.3286 16 6 7.1800 0.9068 1.2195 17 16 5.8266 1.5182 2.0463 18 6 4.6861 0.7218 0.9716 19 6 3.2746 0.7256 0.9777 20 6 2.5458 1.4842 2.0004 21 8 3.1562 2.1090 2.8422 22 1 2.7289 -1.2823 -1.7141 23 1 5.1727 -1.2803 -1.7291 24 1 10.2636 1.4974 -0.3420 25 1 8.2026 1.1142 1.4982 26 1 1.4657 1.4863 2.0039 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396279713.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:39 Heat of formation + Delta-G solvation = 15.957935 kcal Electronic energy + Delta-G solvation = -15355.618040 eV Core-core repulsion = 12683.083517 eV Total energy + Delta-G solvation = -2672.534523 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98170 -39.43747 -37.93911 -36.51350 -34.23306 -32.38231 -30.51033 -28.11519 -25.89709 -24.91860 -22.20694 -21.73878 -20.08115 -18.53596 -17.93456 -17.50365 -16.61661 -16.31908 -15.73098 -15.66340 -15.27144 -14.83578 -14.72746 -14.63726 -14.02971 -13.91354 -13.39977 -13.22671 -13.17835 -12.69287 -12.49552 -12.20644 -11.98902 -11.71469 -11.36044 -11.03455 -10.64426 -10.33955 -9.26492 -8.69717 -8.53353 -6.27311 -0.79782 0.01759 1.00975 1.16843 1.41051 1.44011 1.55996 1.56430 1.66786 1.97803 2.17160 2.25531 2.71596 2.83751 3.14465 3.36459 3.87920 4.01785 4.22391 4.47773 4.61246 4.70169 5.03833 5.16659 5.24985 5.35543 5.60093 5.82587 5.96971 6.30555 6.35642 6.49016 6.82154 6.94927 8.39299 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029381 B = 0.006671 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.761997 B = 4196.214365 C = 5086.841913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.283 3.717 3 C 0.037 3.963 4 C -0.089 4.089 5 C -0.036 4.036 6 C -0.077 4.077 7 C 0.057 3.943 8 C -0.460 4.460 9 H 0.092 0.908 10 C 0.026 3.974 11 N -0.828 5.828 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.278 1.278 15 H -0.253 1.253 16 C -0.407 4.407 17 S 0.111 5.889 18 C -0.124 4.124 19 C -0.134 4.134 20 C 0.377 3.623 21 O -0.475 6.475 22 H 0.179 0.821 23 H 0.153 0.847 24 H 0.283 0.717 25 H 0.135 0.865 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -4.310 -2.843 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.032 4.032 3 C 0.031 3.969 4 C -0.113 4.113 5 C -0.056 4.056 6 C -0.088 4.088 7 C 0.048 3.952 8 C -0.492 4.492 9 H 0.110 0.890 10 C -0.188 4.188 11 N -0.455 5.455 12 Si 0.805 3.195 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.177 1.177 16 C -0.543 4.543 17 S 0.377 5.623 18 C -0.241 4.241 19 C -0.145 4.145 20 C 0.236 3.764 21 O -0.349 6.349 22 H 0.197 0.803 23 H 0.171 0.829 24 H 0.094 0.906 25 H 0.152 0.848 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.697 -2.846 -1.074 9.213 hybrid contribution 1.896 -0.894 -1.355 2.496 sum -6.801 -3.740 -2.429 8.133 Atomic orbital electron populations 1.81293 1.12031 1.08873 1.08488 1.25218 0.91811 0.93080 0.93065 1.15702 0.83800 1.00215 0.97177 1.21106 0.92753 0.99123 0.98363 1.21287 0.93578 0.94865 0.95858 1.20082 0.93848 0.98634 0.96268 1.17744 0.89393 0.94937 0.93098 1.19376 0.94597 1.13258 1.21972 0.88985 1.26748 1.01888 0.95268 0.94887 1.69957 1.21798 1.16489 1.37223 0.85158 0.76269 0.79380 0.78681 1.18579 1.20287 1.17699 1.24549 1.01326 1.21144 1.07270 1.82410 0.94042 1.53036 1.32791 1.23015 0.96493 1.03139 1.01428 1.20175 0.90667 1.03622 1.00045 1.24330 0.95857 0.75805 0.80361 1.90539 1.73540 1.35453 1.35405 0.80325 0.82890 0.90630 0.84774 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.98 18.54 19.00 0.35 -10.63 15 2 C 0.28 6.55 13.90 88.33 1.23 7.78 15 3 C 0.04 0.93 5.76 -21.12 -0.12 0.81 15 4 C -0.09 -2.07 9.70 22.38 0.22 -1.85 15 5 C -0.04 -1.11 9.82 22.66 0.22 -0.89 15 6 C -0.08 -3.21 6.03 -20.18 -0.12 -3.33 15 7 C 0.06 2.84 5.69 -20.87 -0.12 2.72 15 8 C -0.46 -22.56 9.05 23.27 0.21 -22.35 15 9 H 0.09 4.07 7.62 -2.91 -0.02 4.04 15 10 C 0.03 1.25 5.31 85.18 0.45 1.71 15 11 N -0.83 -42.78 10.89 21.80 0.24 -42.55 15 12 Si 0.98 36.28 29.59 68.60 2.03 38.31 15 13 H -0.26 -9.18 7.11 99.48 0.71 -8.48 15 14 H -0.28 -10.18 7.11 99.48 0.71 -9.47 15 15 H -0.25 -8.94 7.11 99.48 0.71 -8.24 15 16 C -0.41 -21.19 9.51 67.40 0.64 -20.55 15 17 S 0.11 5.04 21.04 -56.49 -1.19 3.85 15 18 C -0.12 -5.00 6.31 23.31 0.15 -4.86 15 19 C -0.13 -4.30 5.92 -19.74 -0.12 -4.41 15 20 C 0.38 11.14 10.98 70.04 0.77 11.90 15 21 O -0.47 -17.53 15.76 -3.11 -0.05 -17.58 15 22 H 0.18 2.58 8.06 -2.91 -0.02 2.56 15 23 H 0.15 4.10 7.79 -2.91 -0.02 4.08 15 24 H 0.28 13.42 8.30 -92.71 -0.77 12.65 15 25 H 0.13 7.62 6.31 -2.91 -0.02 7.60 15 26 H 0.14 2.89 7.17 -2.91 -0.02 2.87 15 Total: -1.00 -60.34 260.37 6.03 -54.30 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.24 Total: 7.62 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 3.41 Total: -33.32 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.59 Total: -53.18 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.19 Total: 3.85 kcal Total: -60.34 6.03 -54.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279713.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.259 kcal (2) G-P(sol) polarization free energy of solvation -60.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds