Wall clock time and date at job start Mon Mar 30 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.33883 * 122.98733 * 328.76458 * 3 2 1 5 5 S 1.69939 * 112.37916 * 180.02562 * 4 3 2 6 6 C 1.76028 * 93.05972 * 359.97438 * 5 4 3 7 7 C 1.39800 * 129.65998 * 180.02562 * 6 5 4 8 8 C 1.38945 * 120.66675 * 179.97438 * 7 6 5 9 9 C 1.46261 * 120.50370 * 180.02562 * 8 7 6 10 10 O 1.21387 * 120.00313 * 174.27125 * 9 8 7 11 11 C 1.46976 * 118.99257 * 0.02562 * 8 7 6 12 12 C 1.40576 * 120.50561 * 180.27055 * 11 8 7 13 13 H 1.07997 * 120.00434 * 325.40638 * 12 11 8 14 14 C 1.40267 * 119.99736 * 145.40840 * 12 11 8 15 15 N 1.30663 * 120.00006 * 350.24456 * 14 12 11 16 16 Si 1.86798 * 120.00195 * 170.24423 * 14 12 11 17 17 H 1.48504 * 109.47039 * 60.00049 * 16 14 12 18 18 H 1.48497 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46875 * 300.00253 * 16 14 12 20 20 C 1.39960 * 118.98421 * 359.97438 * 11 8 7 21 21 C 1.40153 * 120.41514 * 0.02562 * 20 11 8 22 22 H 1.08006 * 123.80681 * 0.05345 * 4 3 2 23 23 H 1.08001 * 119.66366 * 359.97438 * 7 6 5 24 24 H 1.08003 * 120.00414 * 354.27729 * 9 8 7 25 25 H 0.96996 * 119.99862 * 180.02562 * 15 14 12 26 26 H 1.07997 * 119.79349 * 179.97438 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2974 -0.9592 0.5823 5 16 4.9676 -0.6906 0.4207 6 6 4.7357 0.8011 -0.4846 7 6 5.6850 1.6786 -1.0168 8 6 5.2889 2.8168 -1.7082 9 6 6.2852 3.7321 -2.2640 10 8 5.9328 4.6664 -2.9543 11 6 3.8536 3.0871 -1.8726 12 6 3.4174 4.2262 -2.5713 13 1 3.9822 5.1449 -2.5127 14 6 2.2486 4.1697 -3.3446 15 7 1.6706 3.0202 -3.5720 16 14 1.5182 5.7379 -4.0494 17 1 2.5096 6.3869 -4.9446 18 1 0.2932 5.4098 -4.8220 19 1 1.1710 6.6637 -2.9415 20 6 2.9278 2.1896 -1.3283 21 6 3.3649 1.0515 -0.6369 22 1 2.8722 -1.8087 1.0964 23 1 6.7369 1.4696 -0.8891 24 1 7.3344 3.5768 -2.0604 25 1 0.8625 2.9811 -4.1071 26 1 1.8700 2.3756 -1.4410 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396279785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:21 Heat of formation + Delta-G solvation = 27.070858 kcal Electronic energy + Delta-G solvation = -15517.863964 eV Core-core repulsion = 12845.811334 eV Total energy + Delta-G solvation = -2672.052630 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.68606 -37.54259 -36.02422 -34.61876 -33.34685 -30.02030 -29.12321 -26.18011 -24.02536 -23.13316 -21.31597 -19.83229 -17.72628 -16.92013 -16.75745 -15.56949 -15.21928 -14.75794 -13.81415 -13.71643 -13.50303 -13.11859 -13.00723 -12.68484 -12.57815 -12.16209 -12.10523 -11.81005 -11.43947 -11.30541 -10.96298 -10.75129 -10.35100 -10.14958 -9.80316 -9.46479 -8.68654 -8.43579 -7.61724 -7.09068 -7.01104 -4.64539 1.01853 2.11126 2.11819 2.40078 2.58497 2.97210 3.00471 3.02115 3.18151 3.48179 3.76974 3.99422 4.35424 4.62582 5.09788 5.20790 5.31336 5.68779 5.93775 6.12014 6.36760 6.59445 6.68470 6.85324 6.95350 7.14013 7.29798 7.64865 7.70042 7.97424 8.27323 8.45420 8.50953 8.66768 9.83927 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.008621 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.702507 B = 3247.072291 C = 4599.181859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.285 3.715 3 C -0.040 4.040 4 C -0.169 4.169 5 S 0.114 5.886 6 C -0.267 4.267 7 C 0.008 3.992 8 C -0.275 4.275 9 C 0.374 3.626 10 O -0.473 6.473 11 C 0.142 3.858 12 C -0.397 4.397 13 H 0.107 0.893 14 C 0.066 3.934 15 N -0.771 5.771 16 Si 0.922 3.078 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.132 4.132 21 C -0.013 4.013 22 H 0.162 0.838 23 H 0.108 0.892 24 H 0.070 0.930 25 H 0.290 0.710 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 -4.204 4.622 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.031 4.031 3 C -0.061 4.061 4 C -0.309 4.309 5 S 0.378 5.622 6 C -0.380 4.380 7 C -0.015 4.015 8 C -0.279 4.279 9 C 0.238 3.762 10 O -0.350 6.350 11 C 0.137 3.863 12 C -0.424 4.424 13 H 0.125 0.875 14 C -0.156 4.156 15 N -0.394 5.394 16 Si 0.745 3.255 17 H -0.182 1.182 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.154 4.154 21 C -0.019 4.019 22 H 0.180 0.820 23 H 0.126 0.874 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.647 -4.650 4.622 8.036 hybrid contribution -1.325 0.963 -0.752 1.803 sum 3.322 -3.686 3.869 6.292 Atomic orbital electron populations 1.81136 1.12003 1.08717 1.09770 1.25226 0.92106 0.92932 0.92870 1.15976 0.84927 0.98498 1.06705 1.24566 1.00201 1.02240 1.03858 1.82343 1.00326 1.22087 1.57405 1.21586 0.95989 1.03043 1.17420 1.20188 0.96148 0.91759 0.93390 1.21464 0.95191 0.99571 1.11697 1.23183 0.92467 0.82878 0.77719 1.90474 1.84424 1.29104 1.31039 1.18327 0.88627 0.91258 0.88099 1.20085 1.04263 0.98466 1.19578 0.87504 1.26253 0.95467 0.98209 0.95658 1.69692 1.16041 1.26360 1.27276 0.86108 0.78560 0.81022 0.79831 1.18208 1.20080 1.18381 1.21046 0.99794 0.94437 1.00100 1.18597 0.90151 0.94503 0.98625 0.82011 0.87359 0.91362 0.89875 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.09 18.54 41.84 0.78 -8.32 15 2 C 0.28 5.59 15.35 -22.47 -0.34 5.24 15 3 C -0.04 -0.75 5.82 -106.19 -0.62 -1.37 15 4 C -0.17 -2.54 10.54 29.20 0.31 -2.24 15 5 S 0.11 1.67 22.98 -107.50 -2.47 -0.81 15 6 C -0.27 -5.08 6.45 -38.27 -0.25 -5.33 15 7 C 0.01 0.14 9.79 -38.74 -0.38 -0.24 15 8 C -0.27 -5.88 6.04 -102.87 -0.62 -6.50 15 9 C 0.37 7.34 11.40 33.95 0.39 7.72 15 10 O -0.47 -10.96 14.61 5.46 0.08 -10.88 15 11 C 0.14 3.48 5.63 -104.83 -0.59 2.89 15 12 C -0.40 -9.98 7.76 -37.94 -0.29 -10.27 15 13 H 0.11 2.71 6.07 -52.49 -0.32 2.40 15 14 C 0.07 1.58 5.24 -17.29 -0.09 1.49 15 15 N -0.77 -19.07 11.19 55.56 0.62 -18.45 15 16 Si 0.92 18.39 29.57 -169.99 -5.03 13.36 15 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 18 H -0.28 -5.34 7.11 56.52 0.40 -4.93 15 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 20 C -0.13 -3.16 8.41 -38.22 -0.32 -3.48 15 21 C -0.01 -0.27 6.02 -105.14 -0.63 -0.90 15 22 H 0.16 1.89 8.06 -52.48 -0.42 1.47 15 23 H 0.11 1.61 8.06 -52.49 -0.42 1.18 15 24 H 0.07 1.03 8.06 -52.48 -0.42 0.60 15 25 H 0.29 6.61 8.29 -40.82 -0.34 6.27 15 26 H 0.12 3.08 6.58 -52.49 -0.35 2.74 15 LS Contribution 261.76 15.07 3.94 3.94 Total: -1.00 -27.30 261.76 -6.59 -33.89 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -1.07 Total: 0.24 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -3.44 Total: -12.98 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 1.40 Total: -26.76 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.47 Total: -0.81 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.30 -6.59 -33.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.960 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds