Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.33883 * 122.98733 * 328.76458 * 3 2 1 5 5 S 1.69939 * 112.37916 * 180.02562 * 4 3 2 6 6 C 1.76028 * 93.05972 * 359.97438 * 5 4 3 7 7 C 1.39800 * 129.65998 * 180.02562 * 6 5 4 8 8 C 1.38945 * 120.66675 * 179.97438 * 7 6 5 9 9 C 1.46261 * 120.50370 * 180.02562 * 8 7 6 10 10 O 1.21387 * 120.00313 * 174.27125 * 9 8 7 11 11 C 1.46976 * 118.99257 * 0.02562 * 8 7 6 12 12 C 1.40576 * 120.50561 * 180.27055 * 11 8 7 13 13 H 1.07997 * 120.00434 * 325.40638 * 12 11 8 14 14 C 1.40267 * 119.99736 * 145.40840 * 12 11 8 15 15 N 1.30663 * 120.00006 * 350.24456 * 14 12 11 16 16 Si 1.86798 * 120.00195 * 170.24423 * 14 12 11 17 17 H 1.48504 * 109.47039 * 60.00049 * 16 14 12 18 18 H 1.48497 * 109.47208 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46875 * 300.00253 * 16 14 12 20 20 C 1.39960 * 118.98421 * 359.97438 * 11 8 7 21 21 C 1.40153 * 120.41514 * 0.02562 * 20 11 8 22 22 H 1.08006 * 123.80681 * 0.05345 * 4 3 2 23 23 H 1.08001 * 119.66366 * 359.97438 * 7 6 5 24 24 H 1.08003 * 120.00414 * 354.27729 * 9 8 7 25 25 H 0.96996 * 119.99862 * 180.02562 * 15 14 12 26 26 H 1.07997 * 119.79349 * 179.97438 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2974 -0.9592 0.5823 5 16 4.9676 -0.6906 0.4207 6 6 4.7357 0.8011 -0.4846 7 6 5.6850 1.6786 -1.0168 8 6 5.2889 2.8168 -1.7082 9 6 6.2852 3.7321 -2.2640 10 8 5.9328 4.6664 -2.9543 11 6 3.8536 3.0871 -1.8726 12 6 3.4174 4.2262 -2.5713 13 1 3.9822 5.1449 -2.5127 14 6 2.2486 4.1697 -3.3446 15 7 1.6706 3.0202 -3.5720 16 14 1.5182 5.7379 -4.0494 17 1 2.5096 6.3869 -4.9446 18 1 0.2932 5.4098 -4.8220 19 1 1.1710 6.6637 -2.9415 20 6 2.9278 2.1896 -1.3283 21 6 3.3649 1.0515 -0.6369 22 1 2.8722 -1.8087 1.0964 23 1 6.7369 1.4696 -0.8891 24 1 7.3344 3.5768 -2.0604 25 1 0.8625 2.9811 -4.1071 26 1 1.8700 2.3756 -1.4410 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396279785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = 11.767594 kcal Electronic energy + Delta-G solvation = -15518.527563 eV Core-core repulsion = 12845.811334 eV Total energy + Delta-G solvation = -2672.716229 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26853 -39.12881 -37.59819 -36.23744 -34.92557 -31.67489 -30.68389 -27.84658 -25.50661 -24.67525 -22.94753 -21.41802 -19.35995 -18.46922 -18.17873 -17.10240 -16.85521 -16.35194 -15.36093 -15.24788 -15.04851 -14.76127 -14.56965 -14.26865 -14.11418 -13.68902 -13.63242 -13.42267 -13.07135 -12.92672 -12.55476 -12.22302 -11.96412 -11.68515 -11.34936 -11.13659 -10.25080 -10.00500 -9.21980 -8.79092 -8.43383 -6.41928 -0.41686 0.54121 0.79876 0.81595 1.12035 1.30384 1.40530 1.42362 1.66634 1.88661 2.12657 2.46572 2.67013 3.22683 3.52659 3.78173 3.91445 4.22386 4.60239 4.65942 4.88157 5.03973 5.08476 5.13676 5.32071 5.53588 5.65138 5.94356 6.05580 6.47271 6.54027 6.73006 6.80176 7.11450 8.15404 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.008621 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.702507 B = 3247.072291 C = 4599.181859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.297 3.703 3 C -0.093 4.093 4 C -0.137 4.137 5 S 0.238 5.762 6 C -0.289 4.289 7 C 0.021 3.979 8 C -0.292 4.292 9 C 0.380 3.620 10 O -0.513 6.513 11 C 0.118 3.882 12 C -0.445 4.445 13 H 0.091 0.909 14 C 0.029 3.971 15 N -0.813 5.813 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.257 1.257 20 C -0.181 4.181 21 C -0.011 4.011 22 H 0.206 0.794 23 H 0.163 0.837 24 H 0.140 0.860 25 H 0.289 0.711 26 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.807 -6.766 6.509 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.018 4.018 3 C -0.114 4.114 4 C -0.277 4.277 5 S 0.504 5.496 6 C -0.402 4.402 7 C 0.000 4.000 8 C -0.297 4.297 9 C 0.245 3.755 10 O -0.392 6.392 11 C 0.114 3.886 12 C -0.473 4.473 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.439 5.439 16 Si 0.799 3.201 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.181 1.181 20 C -0.203 4.203 21 C -0.018 4.018 22 H 0.223 0.777 23 H 0.180 0.820 24 H 0.156 0.844 25 H 0.100 0.900 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.972 -7.221 6.523 12.580 hybrid contribution -1.998 1.426 -1.073 2.679 sum 5.974 -5.795 5.450 9.948 Atomic orbital electron populations 1.81121 1.12967 1.09920 1.11467 1.25494 0.92461 0.92026 0.91860 1.15891 0.84407 1.00165 1.10967 1.25248 1.01119 1.01340 0.99984 1.82042 0.98010 1.16550 1.52994 1.22272 0.95173 1.05675 1.17114 1.20693 0.98689 0.89845 0.90797 1.21982 0.94384 1.01312 1.11985 1.24027 0.94651 0.81093 0.75745 1.90479 1.85426 1.30681 1.32630 1.18725 0.90738 0.91396 0.87773 1.20055 1.05900 0.98773 1.22555 0.89078 1.26916 0.95565 1.00625 0.95657 1.69772 1.16920 1.27811 1.29363 0.85285 0.77924 0.77786 0.79092 1.18494 1.19077 1.18091 1.20755 0.98255 0.97244 1.04088 1.18901 0.92118 0.93787 0.96961 0.77674 0.81991 0.84443 0.90017 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.38 18.54 19.00 0.35 -20.03 15 2 C 0.30 11.79 15.35 88.33 1.36 13.15 15 3 C -0.09 -3.32 5.82 -20.88 -0.12 -3.45 15 4 C -0.14 -3.42 10.54 66.83 0.70 -2.72 15 5 S 0.24 5.39 22.98 -56.49 -1.30 4.09 15 6 C -0.29 -9.94 6.45 23.12 0.15 -9.79 15 7 C 0.02 0.71 9.79 22.82 0.22 0.93 15 8 C -0.29 -12.23 6.04 -18.73 -0.11 -12.35 15 9 C 0.38 14.17 11.40 69.91 0.80 14.96 15 10 O -0.51 -24.02 14.61 -3.36 -0.05 -24.07 15 11 C 0.12 6.09 5.63 -20.00 -0.11 5.98 15 12 C -0.44 -24.10 7.76 23.33 0.18 -23.92 15 13 H 0.09 5.02 6.07 -2.91 -0.02 5.00 15 14 C 0.03 1.50 5.24 85.36 0.45 1.95 15 15 N -0.81 -43.87 11.19 21.88 0.24 -43.63 15 16 Si 0.98 40.57 29.57 68.60 2.03 42.60 15 17 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 18 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 19 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 20 C -0.18 -9.23 8.41 23.15 0.19 -9.03 15 21 C -0.01 -0.47 6.02 -20.20 -0.12 -0.59 15 22 H 0.21 3.40 8.06 -2.91 -0.02 3.38 15 23 H 0.16 3.62 8.06 -2.91 -0.02 3.59 15 24 H 0.14 3.33 8.06 -2.91 -0.02 3.31 15 25 H 0.29 14.42 8.29 -92.71 -0.77 13.65 15 26 H 0.08 4.81 6.58 -2.91 -0.02 4.79 15 Total: -1.00 -67.66 261.76 6.11 -61.55 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.24 Total: 4.36 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.58 Total: -24.88 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.60 Total: -63.65 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.30 Total: 4.09 kcal Total: -67.66 6.11 -61.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396279785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.320 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds