Wall clock time and date at job start Mon Mar 30 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38743 * 120.40966 * 172.24218 * 3 2 1 5 5 C 1.39602 * 120.69997 * 179.97438 * 4 3 2 6 6 S 1.76199 * 129.44361 * 180.02562 * 5 4 3 7 7 C 1.75396 * 91.82104 * 180.02562 * 6 5 4 8 8 C 1.39801 * 124.81054 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99993 * 188.25514 * 8 7 6 10 10 C 1.40299 * 119.99747 * 8.24393 * 8 7 6 11 11 N 1.30677 * 120.00361 * 8.18251 * 10 8 7 12 12 Si 1.86798 * 119.99814 * 188.17525 * 10 8 7 13 13 H 1.48504 * 109.47236 * 265.01918 * 12 10 8 14 14 H 1.48496 * 109.47524 * 25.01957 * 12 10 8 15 15 H 1.48502 * 109.46859 * 145.01994 * 12 10 8 16 16 C 1.37008 * 110.38034 * 0.24299 * 7 6 5 17 17 C 1.39783 * 115.10707 * 359.56329 * 16 7 6 18 18 C 1.41729 * 127.65681 * 180.18190 * 17 16 7 19 19 C 1.38393 * 120.55826 * 180.25741 * 18 17 16 20 20 C 1.46811 * 120.32165 * 180.02562 * 19 18 17 21 21 O 1.21298 * 119.99975 * 359.97438 * 20 19 18 22 22 H 1.07999 * 119.65240 * 0.03836 * 4 3 2 23 23 H 0.96994 * 120.00825 * 179.97438 * 11 10 8 24 24 H 1.08001 * 122.44611 * 179.73448 * 16 7 6 25 25 H 1.07995 * 119.71994 * 0.28647 * 18 17 16 26 26 H 1.07999 * 120.00173 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 1.1866 -0.1615 5 6 4.6658 1.1943 -0.1619 6 16 5.7777 2.5487 -0.3457 7 6 7.1728 1.4953 -0.2026 8 6 8.5032 1.9207 -0.2607 9 1 9.3014 1.1940 -0.2975 10 6 8.8016 3.2915 -0.2714 11 7 7.8543 4.1681 -0.0668 12 14 10.5531 3.8638 -0.5782 13 1 11.2359 4.0864 0.7216 14 1 11.2844 2.8274 -1.3504 15 1 10.5313 5.1325 -1.3497 16 6 6.7739 0.1958 -0.0317 17 6 5.3903 -0.0006 0.0003 18 6 4.6929 -1.2233 0.1661 19 6 3.3092 -1.2492 0.1700 20 6 2.5922 -2.5185 0.3427 21 8 3.2126 -3.5514 0.4825 22 1 2.7304 2.1137 -0.2872 23 1 8.0605 5.1158 -0.0738 24 1 7.4771 -0.6171 0.0734 25 1 5.2460 -2.1424 0.2910 26 1 1.5123 -2.5328 0.3445 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396280175.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:04 Heat of formation + Delta-G solvation = -2.019337 kcal Electronic energy + Delta-G solvation = -14991.725868 eV Core-core repulsion = 12318.411793 eV Total energy + Delta-G solvation = -2673.314076 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64425 -39.23021 -37.69134 -36.64217 -34.83020 -32.02982 -31.24631 -27.85081 -26.22107 -24.01511 -22.72230 -20.94131 -20.14887 -19.43254 -17.58536 -17.33702 -16.91358 -16.25080 -15.57686 -15.47962 -15.08205 -14.65624 -14.64105 -14.51879 -14.18581 -14.00017 -13.63517 -13.39260 -13.24210 -13.05702 -12.41237 -12.06620 -11.88616 -11.85202 -11.17550 -11.02338 -10.80846 -10.44244 -9.33178 -9.08701 -8.35914 -6.62879 -0.50539 0.02765 1.04877 1.25161 1.38493 1.49032 1.56879 1.68782 1.70616 1.80788 2.11432 2.21769 2.84428 3.04706 3.16665 3.25319 3.82382 4.26602 4.46690 4.53019 4.78857 4.83319 5.03581 5.15326 5.27988 5.33791 5.51499 5.74098 5.92267 6.03899 6.27937 6.37061 6.43797 6.56407 7.84775 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.038368 B = 0.005356 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.591580 B = 5226.900220 C = 5934.953084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.294 3.706 3 C -0.088 4.088 4 C 0.015 3.985 5 C -0.275 4.275 6 S 0.141 5.859 7 C 0.028 3.972 8 C -0.388 4.388 9 H 0.110 0.890 10 C 0.021 3.979 11 N -0.780 5.780 12 Si 1.008 2.992 13 H -0.257 1.257 14 H -0.252 1.252 15 H -0.259 1.259 16 C -0.373 4.373 17 C 0.010 3.990 18 C -0.074 4.074 19 C -0.140 4.140 20 C 0.398 3.602 21 O -0.492 6.492 22 H 0.140 0.860 23 H 0.317 0.683 24 H 0.113 0.887 25 H 0.128 0.872 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 1.379 -0.872 1.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.018 4.018 3 C -0.095 4.095 4 C -0.010 4.010 5 C -0.390 4.390 6 S 0.403 5.597 7 C -0.092 4.092 8 C -0.422 4.422 9 H 0.128 0.872 10 C -0.201 4.201 11 N -0.405 5.405 12 Si 0.826 3.174 13 H -0.182 1.182 14 H -0.176 1.176 15 H -0.183 1.183 16 C -0.397 4.397 17 C 0.000 4.000 18 C -0.094 4.094 19 C -0.146 4.146 20 C 0.259 3.741 21 O -0.367 6.367 22 H 0.158 0.842 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.942 2.607 -0.978 2.939 hybrid contribution 1.338 -1.152 0.189 1.775 sum 0.396 1.455 -0.789 1.702 Atomic orbital electron populations 1.81223 1.12228 1.08542 1.12613 1.25337 0.91922 0.92618 0.91919 1.16116 0.83187 0.93298 1.16931 1.20309 0.90692 0.96746 0.93277 1.23634 0.98017 1.00421 1.16895 1.84580 0.93403 1.04980 1.76738 1.21803 0.97645 0.94886 0.94890 1.19852 0.92176 0.93855 1.36337 0.87186 1.27295 1.05841 0.95783 0.91147 1.68789 1.37014 1.05826 1.28863 0.84728 0.73845 0.78913 0.79905 1.18155 1.17551 1.18313 1.19919 0.93426 0.96246 1.30060 1.18235 0.93243 0.92699 0.95775 1.21199 0.92839 0.96483 0.98927 1.21251 0.93453 0.93991 1.05889 1.24101 0.95633 0.85363 0.68983 1.90497 1.73424 1.36006 1.36821 0.84226 0.86961 0.86904 0.85449 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.20 18.54 19.00 0.35 -14.85 15 2 C 0.29 9.02 14.16 88.33 1.25 10.27 15 3 C -0.09 -2.88 5.91 -19.81 -0.12 -2.99 15 4 C 0.01 0.51 9.74 22.72 0.22 0.73 15 5 C -0.27 -11.26 6.45 23.20 0.15 -11.11 15 6 S 0.14 6.08 20.29 -56.49 -1.15 4.93 15 7 C 0.03 1.29 6.07 22.36 0.14 1.42 15 8 C -0.39 -17.04 9.26 23.15 0.21 -16.83 15 9 H 0.11 4.53 7.86 -2.91 -0.02 4.51 15 10 C 0.02 0.84 5.47 85.37 0.47 1.31 15 11 N -0.78 -31.84 10.76 21.89 0.24 -31.60 15 12 Si 1.01 29.33 29.57 68.60 2.03 31.36 15 13 H -0.26 -7.29 7.11 99.48 0.71 -6.58 15 14 H -0.25 -7.26 7.11 99.48 0.71 -6.55 15 15 H -0.26 -7.15 7.11 99.48 0.71 -6.44 15 16 C -0.37 -17.03 10.11 22.35 0.23 -16.81 15 17 C 0.01 0.41 5.84 -21.45 -0.13 0.28 15 18 C -0.07 -2.83 9.61 23.17 0.22 -2.60 15 19 C -0.14 -4.72 6.02 -18.90 -0.11 -4.83 15 20 C 0.40 11.89 11.07 70.06 0.78 12.66 15 21 O -0.49 -17.41 17.14 -3.09 -0.05 -17.46 15 22 H 0.14 4.17 8.06 -2.91 -0.02 4.15 15 23 H 0.32 11.27 8.29 -92.71 -0.77 10.50 15 24 H 0.11 4.98 8.06 -2.91 -0.02 4.95 15 25 H 0.13 4.73 7.60 -2.91 -0.02 4.71 15 26 H 0.13 2.95 7.32 -2.91 -0.02 2.93 15 Total: -1.00 -49.90 264.51 5.96 -43.94 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.24 Total: 12.18 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.31 Total: -28.50 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.59 Total: -46.45 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.46 kcal Atomic # 14 Polarization: 29.33 SS G_CDS: 2.03 Total: 31.36 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.15 Total: 4.93 kcal Total: -49.90 5.96 -43.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280175.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.916 kcal (2) G-P(sol) polarization free energy of solvation -49.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds