Wall clock time and date at job start Mon Mar 30 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38620 * 120.15213 * 322.48741 * 3 2 1 5 5 C 1.39828 * 120.50244 * 179.74839 * 4 3 2 6 6 S 1.75866 * 129.87763 * 180.22317 * 5 4 3 7 7 C 1.69948 * 93.27316 * 180.28566 * 6 5 4 8 8 C 1.36567 * 112.03391 * 359.97438 * 7 6 5 9 9 C 1.40718 * 123.28370 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00272 * 157.23676 * 9 8 7 11 11 C 1.39835 * 119.99759 * 337.23940 * 9 8 7 12 12 N 1.30994 * 119.99713 * 160.60661 * 11 9 8 13 13 Si 1.86794 * 120.00092 * 340.60747 * 11 9 8 14 14 H 1.48496 * 109.47587 * 94.05673 * 13 11 9 15 15 H 1.48499 * 109.47148 * 214.05689 * 13 11 9 16 16 H 1.48502 * 109.47098 * 334.05444 * 13 11 9 17 17 C 1.39891 * 120.00200 * 0.53037 * 5 4 3 18 18 C 1.40236 * 119.67228 * 359.75284 * 17 5 4 19 19 C 1.38949 * 120.39439 * 359.97091 * 18 17 5 20 20 C 1.46705 * 120.13707 * 180.02562 * 19 18 17 21 21 O 1.21317 * 120.00293 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.74467 * 0.02562 * 4 3 2 23 23 H 1.08001 * 123.98414 * 179.97438 * 7 6 5 24 24 H 0.97001 * 119.99626 * 179.97438 * 12 11 9 25 25 H 1.07998 * 119.80705 * 179.97438 * 18 17 5 26 26 H 1.08000 * 120.00207 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2648 -0.9498 0.7299 5 6 4.6630 -0.9592 0.7309 6 16 5.7828 -2.0387 1.5518 7 6 7.1529 -1.2379 0.9437 8 6 6.8170 -0.1844 0.1423 9 6 7.7672 0.6418 -0.4860 10 1 7.4959 1.2031 -1.3678 11 6 9.0629 0.7358 0.0315 12 7 10.0393 1.1750 -0.7233 13 14 9.4014 0.2349 1.7989 14 1 9.8493 -1.1804 1.8353 15 1 10.4633 1.1049 2.3652 16 1 8.1606 0.3823 2.6014 17 6 5.3695 0.0022 0.0005 18 6 4.6684 0.9691 -0.7345 19 6 3.2790 0.9762 -0.7412 20 6 2.5513 1.9900 -1.5125 21 8 1.3381 1.9937 -1.5170 22 1 2.7234 -1.6915 1.2985 23 1 8.1694 -1.5279 1.1651 24 1 10.9380 1.2406 -0.3642 25 1 5.2117 1.7126 -1.2989 26 1 3.0956 2.7331 -2.0765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396280201.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:04 Heat of formation + Delta-G solvation = 27.740177 kcal Electronic energy + Delta-G solvation = -15339.688062 eV Core-core repulsion = 12667.664456 eV Total energy + Delta-G solvation = -2672.023606 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79535 -38.14151 -36.31262 -35.00808 -32.97753 -31.26167 -29.55450 -26.41752 -24.92856 -23.10065 -21.59639 -19.93519 -18.80297 -17.01068 -16.73261 -16.34889 -15.43442 -14.88387 -14.40579 -14.36613 -13.82359 -13.39720 -13.32048 -13.20887 -12.84291 -12.66747 -12.21556 -12.11848 -12.02951 -11.31374 -11.02909 -10.66383 -10.33432 -9.97726 -9.90486 -9.58571 -9.50249 -9.05922 -7.95962 -7.27403 -7.20459 -4.71419 0.56973 1.13970 2.25127 2.43277 2.79074 3.01011 3.05143 3.07125 3.19475 3.28935 3.53682 3.82090 4.15533 4.15978 4.39631 4.85775 4.94759 5.27098 5.52871 5.55871 5.78630 6.04114 6.18739 6.33815 6.40652 6.66905 6.88972 7.13156 7.30257 7.54653 7.83032 7.97414 8.12196 8.48492 9.78619 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.006805 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.844413 B = 4113.677209 C = 4917.111199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.267 3.733 3 C 0.021 3.979 4 C -0.055 4.055 5 C -0.118 4.118 6 S 0.106 5.894 7 C -0.460 4.460 8 C 0.085 3.915 9 C -0.412 4.412 10 H 0.096 0.904 11 C 0.086 3.914 12 N -0.794 5.794 13 Si 0.917 3.083 14 H -0.271 1.271 15 H -0.292 1.292 16 H -0.240 1.240 17 C -0.057 4.057 18 C -0.002 4.002 19 C -0.187 4.187 20 C 0.382 3.618 21 O -0.467 6.467 22 H 0.131 0.869 23 H 0.142 0.858 24 H 0.290 0.710 25 H 0.143 0.857 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -1.037 1.997 3.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.048 4.048 3 C 0.014 3.986 4 C -0.082 4.082 5 C -0.235 4.235 6 S 0.372 5.628 7 C -0.595 4.595 8 C 0.077 3.923 9 C -0.443 4.443 10 H 0.114 0.886 11 C -0.135 4.135 12 N -0.417 5.417 13 Si 0.744 3.256 14 H -0.198 1.198 15 H -0.220 1.220 16 H -0.163 1.163 17 C -0.069 4.069 18 C -0.022 4.022 19 C -0.195 4.195 20 C 0.242 3.758 21 O -0.341 6.341 22 H 0.149 0.851 23 H 0.159 0.841 24 H 0.100 0.900 25 H 0.161 0.839 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.283 -2.214 2.874 6.409 hybrid contribution 1.473 0.996 -0.238 1.794 sum -3.811 -1.218 2.636 4.791 Atomic orbital electron populations 1.81088 1.12088 1.08320 1.08194 1.25341 0.92400 0.93375 0.93709 1.15632 0.84146 0.97875 1.00939 1.20276 0.91221 0.97916 0.98767 1.22948 0.96483 1.01261 1.02764 1.81889 0.95203 1.33402 1.52276 1.23780 1.00467 1.10158 1.25059 1.17407 0.88732 0.92975 0.93228 1.18990 0.92997 1.21654 1.10627 0.88619 1.26163 0.95051 0.91653 1.00665 1.69739 1.01837 1.32634 1.37442 0.86133 0.79243 0.77908 0.82290 1.19798 1.22018 1.16261 1.19635 0.94294 0.95171 0.97767 1.21114 0.91201 0.95874 0.94021 1.20425 0.94150 1.00185 1.04785 1.23953 0.89169 0.84332 0.78339 1.90560 1.17410 1.70356 1.55731 0.85094 0.84071 0.89970 0.83900 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.83 18.41 41.84 0.77 -7.06 15 2 C 0.27 4.55 12.75 -22.47 -0.29 4.26 15 3 C 0.02 0.33 5.76 -106.53 -0.61 -0.29 15 4 C -0.06 -0.85 9.75 -38.85 -0.38 -1.22 15 5 C -0.12 -2.07 6.44 -38.37 -0.25 -2.31 15 6 S 0.11 1.89 22.96 -107.50 -2.47 -0.58 15 7 C -0.46 -9.80 8.08 30.13 0.24 -9.56 15 8 C 0.09 1.85 5.33 -106.18 -0.57 1.28 15 9 C -0.41 -9.58 9.55 -38.05 -0.36 -9.94 15 10 H 0.10 2.23 7.84 -52.49 -0.41 1.82 15 11 C 0.09 2.01 5.46 -17.31 -0.09 1.92 15 12 N -0.79 -19.00 13.94 55.54 0.77 -18.22 15 13 Si 0.92 19.01 24.56 -169.99 -4.17 14.84 15 14 H -0.27 -5.58 6.65 56.52 0.38 -5.20 15 15 H -0.29 -5.91 7.11 56.52 0.40 -5.51 15 16 H -0.24 -5.05 6.77 56.52 0.38 -4.67 15 17 C -0.06 -1.07 6.02 -105.14 -0.63 -1.70 15 18 C 0.00 -0.03 9.56 -38.57 -0.37 -0.40 15 19 C -0.19 -2.78 5.88 -104.91 -0.62 -3.40 15 20 C 0.38 5.12 11.40 34.15 0.39 5.51 15 21 O -0.47 -8.01 15.13 5.53 0.08 -7.92 15 22 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 23 H 0.14 3.10 4.35 -52.49 -0.23 2.88 15 24 H 0.29 6.30 8.30 -40.82 -0.34 5.97 15 25 H 0.14 1.94 7.83 -52.49 -0.41 1.52 15 26 H 0.11 0.99 8.06 -52.49 -0.42 0.56 15 LS Contribution 255.95 15.07 3.86 3.86 Total: -1.00 -26.53 255.95 -5.77 -32.30 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -1.08 Total: -1.36 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -3.54 Total: -15.85 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 1.54 Total: -25.29 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.08 Total: -7.92 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.17 Total: 14.84 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.47 Total: -0.58 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.53 -5.77 -32.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280201.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.040 kcal (2) G-P(sol) polarization free energy of solvation -26.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds