Wall clock time and date at job start Mon Mar 30 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38620 * 120.15213 * 322.48741 * 3 2 1 5 5 C 1.39828 * 120.50244 * 179.74839 * 4 3 2 6 6 S 1.75866 * 129.87763 * 180.22317 * 5 4 3 7 7 C 1.69948 * 93.27316 * 180.28566 * 6 5 4 8 8 C 1.36567 * 112.03391 * 359.97438 * 7 6 5 9 9 C 1.40718 * 123.28370 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00272 * 157.23676 * 9 8 7 11 11 C 1.39835 * 119.99759 * 337.23940 * 9 8 7 12 12 N 1.30994 * 119.99713 * 160.60661 * 11 9 8 13 13 Si 1.86794 * 120.00092 * 340.60747 * 11 9 8 14 14 H 1.48496 * 109.47587 * 94.05673 * 13 11 9 15 15 H 1.48499 * 109.47148 * 214.05689 * 13 11 9 16 16 H 1.48502 * 109.47098 * 334.05444 * 13 11 9 17 17 C 1.39891 * 120.00200 * 0.53037 * 5 4 3 18 18 C 1.40236 * 119.67228 * 359.75284 * 17 5 4 19 19 C 1.38949 * 120.39439 * 359.97091 * 18 17 5 20 20 C 1.46705 * 120.13707 * 180.02562 * 19 18 17 21 21 O 1.21317 * 120.00293 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.74467 * 0.02562 * 4 3 2 23 23 H 1.08001 * 123.98414 * 179.97438 * 7 6 5 24 24 H 0.97001 * 119.99626 * 179.97438 * 12 11 9 25 25 H 1.07998 * 119.80705 * 179.97438 * 18 17 5 26 26 H 1.08000 * 120.00207 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2648 -0.9498 0.7299 5 6 4.6630 -0.9592 0.7309 6 16 5.7828 -2.0387 1.5518 7 6 7.1529 -1.2379 0.9437 8 6 6.8170 -0.1844 0.1423 9 6 7.7672 0.6418 -0.4860 10 1 7.4959 1.2031 -1.3678 11 6 9.0629 0.7358 0.0315 12 7 10.0393 1.1750 -0.7233 13 14 9.4014 0.2349 1.7989 14 1 9.8493 -1.1804 1.8353 15 1 10.4633 1.1049 2.3652 16 1 8.1606 0.3823 2.6014 17 6 5.3695 0.0022 0.0005 18 6 4.6684 0.9691 -0.7345 19 6 3.2790 0.9762 -0.7412 20 6 2.5513 1.9900 -1.5125 21 8 1.3381 1.9937 -1.5170 22 1 2.7234 -1.6915 1.2985 23 1 8.1694 -1.5279 1.1651 24 1 10.9380 1.2406 -0.3642 25 1 5.2117 1.7126 -1.2989 26 1 3.0956 2.7331 -2.0765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396280201.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:04 Heat of formation + Delta-G solvation = 13.233697 kcal Electronic energy + Delta-G solvation = -15340.317110 eV Core-core repulsion = 12667.664456 eV Total energy + Delta-G solvation = -2672.652654 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.07711 -39.44647 -37.73017 -36.53246 -34.59611 -32.54564 -31.01764 -28.02599 -26.23875 -24.49474 -22.93424 -21.38249 -20.15039 -18.61218 -18.20667 -17.63278 -16.83376 -16.39635 -15.69759 -15.65674 -15.08752 -14.94894 -14.64949 -14.62430 -14.34147 -14.13236 -13.66889 -13.63673 -13.46996 -12.86845 -12.65322 -12.12484 -11.84337 -11.57011 -11.43301 -11.09865 -10.74753 -10.47467 -9.41370 -8.94536 -8.73209 -6.42108 -0.72879 -0.14926 0.85669 1.02295 1.27460 1.35924 1.50653 1.65355 1.71894 1.72258 2.06237 2.14203 2.79947 2.83045 3.19044 3.31583 3.70131 3.96415 4.28494 4.41985 4.46765 4.77707 4.83193 4.98046 5.07816 5.10853 5.43794 5.60971 5.68760 6.25063 6.43965 6.46085 6.48863 6.77383 8.11016 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.006805 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.844413 B = 4113.677209 C = 4917.111199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.281 3.719 3 C 0.017 3.983 4 C -0.041 4.041 5 C -0.125 4.125 6 S 0.138 5.862 7 C -0.474 4.474 8 C 0.075 3.925 9 C -0.439 4.439 10 H 0.084 0.916 11 C 0.057 3.943 12 N -0.831 5.831 13 Si 0.958 3.042 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.246 1.246 17 C -0.082 4.082 18 C 0.007 3.993 19 C -0.177 4.177 20 C 0.393 3.607 21 O -0.502 6.502 22 H 0.158 0.842 23 H 0.131 0.869 24 H 0.295 0.705 25 H 0.164 0.836 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -1.056 2.353 5.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.033 4.033 3 C 0.011 3.989 4 C -0.067 4.067 5 C -0.242 4.242 6 S 0.405 5.595 7 C -0.608 4.608 8 C 0.066 3.934 9 C -0.470 4.470 10 H 0.102 0.898 11 C -0.161 4.161 12 N -0.457 5.457 13 Si 0.783 3.217 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.169 1.169 17 C -0.094 4.094 18 C -0.013 4.013 19 C -0.184 4.184 20 C 0.254 3.746 21 O -0.377 6.377 22 H 0.176 0.824 23 H 0.148 0.852 24 H 0.106 0.894 25 H 0.181 0.819 26 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.526 -2.233 3.229 7.616 hybrid contribution 1.684 0.961 -0.373 1.974 sum -4.842 -1.271 2.856 5.764 Atomic orbital electron populations 1.81109 1.12978 1.09270 1.09160 1.25421 0.92445 0.92549 0.92884 1.15768 0.83580 0.98356 1.01243 1.20459 0.90254 0.97959 0.98076 1.23062 0.97283 1.01019 1.02831 1.81643 0.93210 1.32714 1.51974 1.24032 1.01678 1.10396 1.24733 1.17603 0.90218 0.92613 0.92973 1.19058 0.93742 1.22994 1.11192 0.89823 1.26661 0.95046 0.91668 1.02683 1.69762 1.02383 1.34972 1.38537 0.85525 0.78867 0.77672 0.79601 1.19836 1.21214 1.16924 1.19689 0.93127 0.96963 0.99578 1.21246 0.91369 0.95356 0.93306 1.20704 0.93822 0.99998 1.03916 1.24628 0.88535 0.84099 0.77304 1.90576 1.19167 1.71135 1.56860 0.82434 0.85167 0.89421 0.81875 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.88 18.41 19.01 0.35 -15.53 15 2 C 0.28 8.91 12.75 88.33 1.13 10.04 15 3 C 0.02 0.49 5.76 -21.10 -0.12 0.37 15 4 C -0.04 -1.14 9.75 22.75 0.22 -0.92 15 5 C -0.13 -4.10 6.44 23.06 0.15 -3.95 15 6 S 0.14 4.68 22.96 -56.49 -1.30 3.38 15 7 C -0.47 -19.85 8.08 67.43 0.54 -19.31 15 8 C 0.07 3.22 5.33 -20.87 -0.11 3.11 15 9 C -0.44 -20.59 9.55 23.26 0.22 -20.37 15 10 H 0.08 3.98 7.84 -2.91 -0.02 3.96 15 11 C 0.06 2.71 5.46 85.20 0.46 3.17 15 12 N -0.83 -40.61 13.94 21.82 0.30 -40.31 15 13 Si 0.96 39.18 24.56 68.60 1.68 40.86 15 14 H -0.27 -10.98 6.65 99.48 0.66 -10.32 15 15 H -0.28 -11.15 7.11 99.48 0.71 -10.44 15 16 H -0.25 -10.16 6.77 99.48 0.67 -9.49 15 17 C -0.08 -2.95 6.02 -20.20 -0.12 -3.07 15 18 C 0.01 0.20 9.56 22.93 0.22 0.42 15 19 C -0.18 -4.67 5.88 -20.05 -0.12 -4.79 15 20 C 0.39 9.06 11.40 70.03 0.80 9.86 15 21 O -0.50 -15.83 15.13 -3.14 -0.05 -15.87 15 22 H 0.16 3.47 8.06 -2.91 -0.02 3.44 15 23 H 0.13 5.69 4.35 -2.91 -0.01 5.68 15 24 H 0.30 13.11 8.30 -92.71 -0.77 12.34 15 25 H 0.16 3.97 7.83 -2.91 -0.02 3.95 15 26 H 0.16 2.12 8.06 -2.91 -0.02 2.09 15 Total: -1.00 -57.11 255.95 5.44 -51.68 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.17 Total: 1.22 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.27 Total: -25.43 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.65 Total: -55.84 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.05 Total: -15.87 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.68 Total: 40.86 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.30 Total: 3.38 kcal Total: -57.11 5.44 -51.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280201.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.913 kcal (2) G-P(sol) polarization free energy of solvation -57.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds