Wall clock time and date at job start Mon Mar 30 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 S 1.75174 * 124.62292 * 105.67080 * 3 2 1 5 5 C 1.75871 * 92.82479 * 179.97438 * 4 3 2 6 6 C 1.39700 * 129.51668 * 179.41712 * 5 4 3 7 7 C 1.39241 * 120.20871 * 179.97438 * 6 5 4 8 8 C 1.47050 * 120.12762 * 179.97438 * 7 6 5 9 9 O 1.21269 * 119.99941 * 180.02562 * 8 7 6 10 10 C 1.40274 * 119.74490 * 0.02562 * 7 6 5 11 11 C 1.35901 * 120.20928 * 0.02562 * 10 7 6 12 12 C 1.39509 * 110.81429 * 359.68805 * 5 4 3 13 13 C 1.38646 * 124.62591 * 285.09109 * 3 2 1 14 14 C 1.39756 * 123.32267 * 359.97438 * 13 3 2 15 15 H 1.07998 * 119.99928 * 38.09822 * 14 13 3 16 16 C 1.40428 * 120.00213 * 218.10576 * 14 13 3 17 17 N 1.30621 * 119.99770 * 19.77372 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 199.77419 * 16 14 13 19 19 H 1.48500 * 109.47117 * 59.99985 * 18 16 14 20 20 H 1.48504 * 109.47189 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47340 * 300.00186 * 18 16 14 22 22 H 1.08007 * 119.89426 * 359.97438 * 6 5 4 23 23 H 1.08006 * 119.99884 * 0.02562 * 8 7 6 24 24 H 1.07990 * 119.89434 * 180.02562 * 10 7 6 25 25 H 1.08004 * 119.57654 * 179.97438 * 11 10 7 26 26 H 0.97000 * 119.99681 * 183.39017 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 16 3.5631 0.3905 -1.3879 5 6 5.0579 0.1416 -0.4955 6 6 6.3812 0.2528 -0.9292 7 6 7.4305 0.0094 -0.0469 8 6 8.8227 0.1265 -0.5055 9 8 9.7348 -0.0866 0.2648 10 6 7.1544 -0.3491 1.2809 11 6 5.8683 -0.4593 1.7061 12 6 4.7923 -0.2214 0.8251 13 6 3.3559 -0.2960 1.1015 14 6 2.8313 -0.6330 2.3523 15 1 1.9465 -1.2486 2.4187 16 6 3.4547 -0.1710 3.5228 17 7 4.2599 0.8562 3.4720 18 14 3.1324 -1.0255 5.1523 19 1 3.5541 -2.4463 5.0580 20 1 3.9047 -0.3507 6.2263 21 1 1.6828 -0.9594 5.4678 22 1 6.5910 0.5286 -1.9522 23 1 9.0330 0.4022 -1.5283 24 1 7.9663 -0.5381 1.9674 25 1 5.6674 -0.7364 2.7305 26 1 4.7286 1.1450 4.2707 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396280311.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:48 Heat of formation + Delta-G solvation = 20.824933 kcal Electronic energy + Delta-G solvation = -15451.750109 eV Core-core repulsion = 12779.426635 eV Total energy + Delta-G solvation = -2672.323474 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.43236 -38.07536 -35.73495 -34.70254 -32.92190 -30.52915 -29.48852 -26.74142 -24.56871 -22.42735 -21.49290 -20.20328 -18.35102 -16.84824 -16.53011 -15.57799 -15.38534 -14.96793 -14.41531 -14.06039 -13.61655 -13.34213 -13.19072 -13.04854 -12.30116 -12.13176 -12.00521 -11.77040 -11.58959 -11.45143 -10.94228 -10.75558 -10.37715 -10.05187 -9.76250 -9.62583 -9.37284 -8.85713 -7.73094 -7.42641 -6.94681 -4.91950 0.81308 1.86878 2.22811 2.38474 2.78617 2.82813 2.85268 3.02696 3.20520 3.58425 4.18246 4.26925 4.34709 4.47766 4.85482 5.18086 5.33940 5.52143 5.65155 5.92696 5.96834 6.20822 6.41348 6.54218 6.66029 6.76431 6.99278 7.31653 7.36335 7.62033 7.78765 8.04527 8.20577 8.84907 9.56359 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.009611 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.810651 B = 2912.574276 C = 4508.388671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.330 3.670 3 C -0.332 4.332 4 S 0.048 5.952 5 C -0.132 4.132 6 C -0.046 4.046 7 C -0.189 4.189 8 C 0.389 3.611 9 O -0.473 6.473 10 C -0.095 4.095 11 C -0.049 4.049 12 C -0.010 4.010 13 C 0.167 3.833 14 C -0.415 4.415 15 H 0.096 0.904 16 C 0.077 3.923 17 N -0.753 5.753 18 Si 0.911 3.089 19 H -0.255 1.255 20 H -0.271 1.271 21 H -0.258 1.258 22 H 0.126 0.874 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -1.087 -2.468 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C 0.021 3.979 3 C -0.452 4.452 4 S 0.308 5.692 5 C -0.248 4.248 6 C -0.069 4.069 7 C -0.193 4.193 8 C 0.249 3.751 9 O -0.348 6.348 10 C -0.117 4.117 11 C -0.069 4.069 12 C -0.019 4.019 13 C 0.155 3.845 14 C -0.445 4.445 15 H 0.114 0.886 16 C -0.148 4.148 17 N -0.374 5.374 18 Si 0.733 3.267 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.182 1.182 22 H 0.144 0.856 23 H 0.114 0.886 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.112 -0.576 -3.401 7.018 hybrid contribution 0.474 -0.544 2.140 2.259 sum 6.586 -1.120 -1.261 6.798 Atomic orbital electron populations 1.81054 1.11874 1.16801 1.09801 1.24289 0.90940 0.90846 0.91793 1.18659 0.87658 1.38996 0.99886 1.82966 0.93514 1.79321 1.13443 1.22530 0.97264 1.06725 0.98261 1.20616 0.89517 0.98187 0.98625 1.20512 0.95004 1.08145 0.95616 1.23945 0.86989 0.71409 0.92780 1.90485 1.48032 1.37502 1.58740 1.20734 0.96712 0.99483 0.94722 1.20780 0.90406 0.96429 0.99282 1.19617 0.94263 0.96547 0.91489 1.17377 0.87620 0.87230 0.92313 1.19292 1.10770 1.25390 0.89096 0.88577 1.26125 0.93143 0.93374 1.02122 1.69738 1.18356 1.16110 1.33241 0.86262 0.80583 0.80796 0.79058 1.17908 1.19525 1.18170 0.85597 0.88561 0.85783 0.85481 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.64 18.54 41.84 0.78 -11.86 15 2 C 0.33 7.95 15.20 -22.48 -0.34 7.60 15 3 C -0.33 -7.65 6.31 -37.51 -0.24 -7.88 15 4 S 0.05 0.93 23.12 -107.50 -2.49 -1.55 15 5 C -0.13 -2.53 6.40 -38.56 -0.25 -2.78 15 6 C -0.05 -0.71 9.82 -38.66 -0.38 -1.09 15 7 C -0.19 -2.94 5.86 -105.19 -0.62 -3.56 15 8 C 0.39 5.09 11.44 34.30 0.39 5.49 15 9 O -0.47 -7.75 17.16 5.57 0.10 -7.66 15 10 C -0.09 -1.64 9.51 -39.65 -0.38 -2.02 15 11 C -0.05 -0.96 8.31 -39.34 -0.33 -1.29 15 12 C -0.01 -0.20 5.56 -105.03 -0.58 -0.79 15 13 C 0.17 3.87 5.41 -105.87 -0.57 3.30 15 14 C -0.41 -9.61 8.51 -38.19 -0.32 -9.93 15 15 H 0.10 2.24 7.91 -52.49 -0.41 1.83 15 16 C 0.08 1.64 4.02 -17.24 -0.07 1.57 15 17 N -0.75 -16.28 10.74 55.57 0.60 -15.68 15 18 Si 0.91 16.08 29.61 -169.99 -5.03 11.04 15 19 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 20 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 21 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 22 H 0.13 1.50 8.06 -52.48 -0.42 1.07 15 23 H 0.10 0.84 8.06 -52.48 -0.42 0.42 15 24 H 0.12 2.01 7.64 -52.49 -0.40 1.61 15 25 H 0.13 2.48 5.91 -52.48 -0.31 2.17 15 26 H 0.30 5.77 8.29 -40.82 -0.34 5.43 15 LS Contribution 262.70 15.07 3.96 3.96 Total: -1.00 -26.23 262.70 -6.88 -33.11 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -1.11 Total: 0.01 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.68 Total: -11.37 kcal Atomic # 7 Polarization: -28.92 SS G_CDS: 1.37 Total: -27.55 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.10 Total: -7.66 kcal Atomic # 14 Polarization: 16.08 SS G_CDS: -5.03 Total: 11.04 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.23 -6.88 -33.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280311.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.939 kcal (2) G-P(sol) polarization free energy of solvation -26.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds