Wall clock time and date at job start Mon Mar 30 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 S 1.75174 * 124.62292 * 105.67080 * 3 2 1 5 5 C 1.75871 * 92.82479 * 179.97438 * 4 3 2 6 6 C 1.39700 * 129.51668 * 179.41712 * 5 4 3 7 7 C 1.39241 * 120.20871 * 179.97438 * 6 5 4 8 8 C 1.47050 * 120.12762 * 179.97438 * 7 6 5 9 9 O 1.21269 * 119.99941 * 180.02562 * 8 7 6 10 10 C 1.40274 * 119.74490 * 0.02562 * 7 6 5 11 11 C 1.35901 * 120.20928 * 0.02562 * 10 7 6 12 12 C 1.39509 * 110.81429 * 359.68805 * 5 4 3 13 13 C 1.38646 * 124.62591 * 285.09109 * 3 2 1 14 14 C 1.39756 * 123.32267 * 359.97438 * 13 3 2 15 15 H 1.07998 * 119.99928 * 38.09822 * 14 13 3 16 16 C 1.40428 * 120.00213 * 218.10576 * 14 13 3 17 17 N 1.30621 * 119.99770 * 19.77372 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 199.77419 * 16 14 13 19 19 H 1.48500 * 109.47117 * 59.99985 * 18 16 14 20 20 H 1.48504 * 109.47189 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47340 * 300.00186 * 18 16 14 22 22 H 1.08007 * 119.89426 * 359.97438 * 6 5 4 23 23 H 1.08006 * 119.99884 * 0.02562 * 8 7 6 24 24 H 1.07990 * 119.89434 * 180.02562 * 10 7 6 25 25 H 1.08004 * 119.57654 * 179.97438 * 11 10 7 26 26 H 0.97000 * 119.99681 * 183.39017 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 16 3.5631 0.3905 -1.3879 5 6 5.0579 0.1416 -0.4955 6 6 6.3812 0.2528 -0.9292 7 6 7.4305 0.0094 -0.0469 8 6 8.8227 0.1265 -0.5055 9 8 9.7348 -0.0866 0.2648 10 6 7.1544 -0.3491 1.2809 11 6 5.8683 -0.4593 1.7061 12 6 4.7923 -0.2214 0.8251 13 6 3.3559 -0.2960 1.1015 14 6 2.8313 -0.6330 2.3523 15 1 1.9465 -1.2486 2.4187 16 6 3.4547 -0.1710 3.5228 17 7 4.2599 0.8562 3.4720 18 14 3.1324 -1.0255 5.1523 19 1 3.5541 -2.4463 5.0580 20 1 3.9047 -0.3507 6.2263 21 1 1.6828 -0.9594 5.4678 22 1 6.5910 0.5286 -1.9522 23 1 9.0330 0.4022 -1.5283 24 1 7.9663 -0.5381 1.9674 25 1 5.6674 -0.7364 2.7305 26 1 4.7286 1.1450 4.2707 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396280311.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:48 Heat of formation + Delta-G solvation = 7.579592 kcal Electronic energy + Delta-G solvation = -15452.324470 eV Core-core repulsion = 12779.426635 eV Total energy + Delta-G solvation = -2672.897835 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73043 -39.39060 -37.45359 -36.39972 -34.52760 -31.90274 -30.96748 -28.44961 -25.91472 -23.83380 -22.95204 -21.61352 -19.95536 -18.21121 -18.05393 -17.07957 -16.71864 -16.40614 -15.86762 -15.26815 -15.03300 -14.77573 -14.73278 -14.63824 -13.89487 -13.79691 -13.55219 -13.49313 -13.22975 -12.95354 -12.41381 -12.30791 -11.87910 -11.57222 -11.30596 -11.02187 -10.67917 -10.30458 -9.28666 -9.03180 -8.48746 -6.63938 -0.56113 0.48450 0.77266 0.86272 1.32755 1.39359 1.42193 1.48124 1.82206 2.09653 2.41465 2.46275 2.81966 3.18528 3.45764 3.66897 4.00430 4.25016 4.33008 4.50307 4.67927 4.78251 4.91624 5.10854 5.20935 5.30736 5.53975 5.72256 5.93849 6.06402 6.34494 6.50517 6.58655 6.98275 7.96242 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.009611 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.810651 B = 2912.574276 C = 4508.388671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C 0.330 3.670 3 C -0.370 4.370 4 S 0.081 5.919 5 C -0.143 4.143 6 C -0.031 4.031 7 C -0.183 4.183 8 C 0.403 3.597 9 O -0.505 6.505 10 C -0.099 4.099 11 C -0.062 4.062 12 C -0.045 4.045 13 C 0.152 3.848 14 C -0.444 4.444 15 H 0.081 0.919 16 C 0.053 3.947 17 N -0.769 5.769 18 Si 0.971 3.029 19 H -0.250 1.250 20 H -0.254 1.254 21 H -0.267 1.267 22 H 0.175 0.825 23 H 0.163 0.837 24 H 0.132 0.868 25 H 0.116 0.884 26 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 -0.777 -3.316 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.222 5.222 2 C 0.022 3.978 3 C -0.489 4.489 4 S 0.340 5.660 5 C -0.258 4.258 6 C -0.055 4.055 7 C -0.187 4.187 8 C 0.265 3.735 9 O -0.381 6.381 10 C -0.120 4.120 11 C -0.082 4.082 12 C -0.054 4.054 13 C 0.140 3.860 14 C -0.475 4.475 15 H 0.099 0.901 16 C -0.171 4.171 17 N -0.391 5.391 18 Si 0.790 3.210 19 H -0.174 1.174 20 H -0.178 1.178 21 H -0.192 1.192 22 H 0.192 0.808 23 H 0.179 0.821 24 H 0.150 0.850 25 H 0.134 0.866 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.671 -0.258 -4.264 9.666 hybrid contribution -0.194 -0.615 2.391 2.476 sum 8.476 -0.873 -1.873 8.724 Atomic orbital electron populations 1.81011 1.12416 1.18105 1.10665 1.24663 0.91446 0.90439 0.91221 1.19051 0.87462 1.40261 1.02153 1.82586 0.92743 1.79350 1.11357 1.22828 0.98657 1.06867 0.97495 1.21076 0.87537 0.96109 1.00741 1.21003 0.97061 1.06022 0.94594 1.24614 0.84671 0.69641 0.94618 1.90503 1.48501 1.38855 1.60211 1.20937 0.95870 0.99000 0.96238 1.20731 0.91078 0.97570 0.98831 1.19615 0.93421 0.99259 0.93100 1.17748 0.89222 0.86665 0.92346 1.19448 1.11091 1.26398 0.90547 0.90131 1.26709 0.92600 0.93514 1.04264 1.69727 1.18383 1.16446 1.34573 0.85383 0.79834 0.80109 0.75633 1.17395 1.17788 1.19190 0.80779 0.82087 0.85028 0.86587 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -27.44 18.54 19.00 0.35 -27.09 15 2 C 0.33 16.45 15.20 88.33 1.34 17.79 15 3 C -0.37 -17.48 6.31 23.61 0.15 -17.34 15 4 S 0.08 3.07 23.12 -56.49 -1.31 1.76 15 5 C -0.14 -5.25 6.40 22.93 0.15 -5.10 15 6 C -0.03 -0.85 9.82 22.86 0.22 -0.62 15 7 C -0.18 -5.01 5.86 -20.23 -0.12 -5.12 15 8 C 0.40 8.48 11.44 70.13 0.80 9.28 15 9 O -0.51 -14.66 17.16 -3.00 -0.05 -14.71 15 10 C -0.10 -3.27 9.51 22.22 0.21 -3.06 15 11 C -0.06 -2.42 8.31 22.43 0.19 -2.24 15 12 C -0.04 -1.90 5.56 -20.13 -0.11 -2.02 15 13 C 0.15 7.31 5.41 -20.67 -0.11 7.20 15 14 C -0.44 -21.46 8.51 23.17 0.20 -21.26 15 15 H 0.08 4.00 7.91 -2.91 -0.02 3.97 15 16 C 0.05 2.29 4.02 85.41 0.34 2.63 15 17 N -0.77 -33.60 10.74 21.91 0.24 -33.37 15 18 Si 0.97 33.16 29.61 68.60 2.03 35.19 15 19 H -0.25 -8.29 7.11 99.48 0.71 -7.58 15 20 H -0.25 -7.95 7.11 99.48 0.71 -7.25 15 21 H -0.27 -9.49 7.11 99.48 0.71 -8.78 15 22 H 0.17 3.02 8.06 -2.91 -0.02 3.00 15 23 H 0.16 1.55 8.06 -2.91 -0.02 1.53 15 24 H 0.13 4.07 7.64 -2.92 -0.02 4.05 15 25 H 0.12 4.63 5.91 -2.91 -0.02 4.61 15 26 H 0.31 11.87 8.29 -92.71 -0.77 11.10 15 Total: -1.00 -59.18 262.70 5.77 -53.42 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.24 Total: 4.65 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.26 Total: -19.85 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.59 Total: -60.46 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.05 Total: -14.71 kcal Atomic # 14 Polarization: 33.16 SS G_CDS: 2.03 Total: 35.19 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -59.18 5.77 -53.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280311.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.999 kcal (2) G-P(sol) polarization free energy of solvation -59.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds