Wall clock time and date at job start Mon Mar 30 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.37166 * 123.03368 * 86.01627 * 3 2 1 5 5 C 1.46204 * 124.54952 * 359.97438 * 4 3 2 6 6 O 1.21382 * 119.99925 * 359.97438 * 5 4 3 7 7 S 1.75211 * 110.90373 * 179.97438 * 4 3 2 8 8 C 1.75903 * 92.57249 * 0.02562 * 7 4 3 9 9 C 1.39341 * 129.76507 * 179.97438 * 8 7 4 10 10 C 1.40225 * 120.07807 * 179.21142 * 9 8 7 11 11 C 1.40889 * 120.17118 * 180.25222 * 10 9 8 12 12 H 1.08003 * 120.00166 * 205.18691 * 11 10 9 13 13 C 1.40155 * 120.00120 * 25.17888 * 11 10 9 14 14 N 1.30711 * 119.99724 * 17.76665 * 13 11 10 15 15 Si 1.86804 * 120.00448 * 197.77006 * 13 11 10 16 16 H 1.48499 * 109.46852 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47175 * 120.00106 * 15 13 11 18 18 H 1.48499 * 109.46830 * 239.99925 * 15 13 11 19 19 C 1.41389 * 119.66123 * 0.73328 * 10 9 8 20 20 C 1.35126 * 120.27010 * 359.51558 * 19 10 9 21 21 C 1.40219 * 110.43789 * 359.75198 * 8 7 4 22 22 H 1.07996 * 120.00396 * 180.02562 * 5 4 3 23 23 H 1.08003 * 119.96045 * 0.02562 * 9 8 7 24 24 H 0.96996 * 119.99899 * 179.97438 * 14 13 11 25 25 H 1.07997 * 119.86581 * 179.50098 * 19 10 9 26 26 H 1.07996 * 119.55464 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3158 -0.0789 -1.1471 5 6 2.7583 -0.1736 -2.4954 6 8 1.5551 -0.1862 -2.6551 7 16 5.0288 -0.0518 -0.7799 8 6 4.7367 0.0681 0.9505 9 6 5.6449 0.1416 2.0047 10 6 5.1827 0.2497 3.3242 11 6 6.0993 0.3295 4.3912 12 1 5.8056 0.0109 5.3805 13 6 7.3924 0.8223 4.1689 14 7 7.6500 1.5202 3.0941 15 14 8.7478 0.4817 5.4084 16 1 8.2021 -0.3250 6.5294 17 1 9.8456 -0.2690 4.7476 18 1 9.2733 1.7677 5.9330 19 6 3.7921 0.2678 3.5793 20 6 2.9112 0.1914 2.5575 21 6 3.3597 0.0908 1.2142 22 1 3.4170 -0.2331 -3.3492 23 1 6.7061 0.1287 1.8044 24 1 8.5448 1.8615 2.9404 25 1 3.4326 0.3428 4.5949 26 1 1.8515 0.2066 2.7655 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396280434.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:26 Heat of formation + Delta-G solvation = 10.893114 kcal Electronic energy + Delta-G solvation = -15206.818891 eV Core-core repulsion = 12534.064741 eV Total energy + Delta-G solvation = -2672.754150 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51088 -39.62680 -37.79827 -36.36936 -34.73303 -31.47204 -31.21411 -28.13138 -26.08654 -24.32296 -22.75033 -21.65584 -19.58284 -18.82195 -18.12937 -17.27050 -16.57116 -16.39169 -15.70908 -15.51444 -15.31746 -14.70803 -14.70349 -14.52570 -14.12856 -13.86720 -13.85395 -13.32163 -13.01218 -12.78978 -12.39916 -12.25041 -11.82791 -11.73010 -11.32266 -11.02258 -10.96231 -10.33609 -9.37423 -8.84372 -8.52059 -6.42338 -0.90708 0.66939 0.69383 0.95777 1.05325 1.43915 1.46776 1.49802 1.59660 1.61934 2.16705 2.29976 2.66271 2.96909 3.27838 3.49514 4.09688 4.27269 4.41399 4.74062 4.77728 4.89984 5.00956 5.16098 5.30199 5.64794 5.70737 5.87554 6.02928 6.35270 6.37636 6.42507 6.67715 6.74567 8.10361 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.005825 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.945690 B = 4805.522265 C = 5488.075852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.289 3.711 3 C 0.061 3.939 4 C -0.301 4.301 5 C 0.415 3.585 6 O -0.503 6.503 7 S 0.170 5.830 8 C -0.089 4.089 9 C -0.185 4.185 10 C 0.100 3.900 11 C -0.441 4.441 12 H 0.098 0.902 13 C 0.036 3.964 14 N -0.786 5.786 15 Si 0.986 3.014 16 H -0.253 1.253 17 H -0.263 1.263 18 H -0.266 1.266 19 C -0.187 4.187 20 C -0.057 4.057 21 C -0.203 4.203 22 H 0.169 0.831 23 H 0.118 0.882 24 H 0.300 0.700 25 H 0.124 0.876 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -1.829 -2.947 5.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.027 4.027 3 C 0.042 3.958 4 C -0.422 4.422 5 C 0.277 3.723 6 O -0.380 6.380 7 S 0.438 5.562 8 C -0.204 4.204 9 C -0.213 4.213 10 C 0.093 3.907 11 C -0.469 4.469 12 H 0.116 0.884 13 C -0.185 4.185 14 N -0.409 5.409 15 Si 0.806 3.194 16 H -0.176 1.176 17 H -0.187 1.187 18 H -0.190 1.190 19 C -0.206 4.206 20 C -0.077 4.077 21 C -0.209 4.209 22 H 0.184 0.816 23 H 0.136 0.864 24 H 0.112 0.888 25 H 0.142 0.858 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.824 -1.755 -4.171 5.924 hybrid contribution -0.315 0.186 1.529 1.572 sum 3.508 -1.569 -2.641 4.663 Atomic orbital electron populations 1.81055 1.12509 1.09096 1.09462 1.25276 0.92291 0.93252 0.91872 1.16395 0.83973 1.01989 0.93458 1.25189 0.99257 1.19021 0.98702 1.23808 0.89963 0.68709 0.89830 1.90587 1.20638 1.38384 1.88376 1.83104 0.98818 1.77328 0.96989 1.22599 0.95831 1.03942 0.98072 1.20574 0.97651 1.12318 0.90739 1.17859 0.92149 0.87615 0.93054 1.20216 0.96190 1.33437 0.97045 0.88402 1.26939 1.01802 0.91584 0.98142 1.69774 1.24400 1.20752 1.25929 0.85064 0.76679 0.79374 0.78281 1.17641 1.18724 1.19031 1.20996 0.93130 1.07906 0.98558 1.20418 0.98673 0.97968 0.90661 1.18357 0.90980 1.19372 0.92184 0.81561 0.86422 0.88847 0.85803 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -18.75 18.54 19.00 0.35 -18.39 15 2 C 0.29 11.71 13.40 88.33 1.18 12.89 15 3 C 0.06 2.35 5.88 -20.49 -0.12 2.23 15 4 C -0.30 -9.88 6.38 24.09 0.15 -9.73 15 5 C 0.42 11.45 11.67 69.89 0.82 12.26 15 6 O -0.50 -18.07 15.96 -3.35 -0.05 -18.12 15 7 S 0.17 5.40 23.15 -56.49 -1.31 4.09 15 8 C -0.09 -3.68 6.42 23.02 0.15 -3.53 15 9 C -0.19 -8.40 8.74 23.02 0.20 -8.20 15 10 C 0.10 4.57 5.56 -21.37 -0.12 4.46 15 11 C -0.44 -19.50 9.03 23.38 0.21 -19.29 15 12 H 0.10 4.04 7.91 -2.91 -0.02 4.02 15 13 C 0.04 1.49 5.13 85.33 0.44 1.93 15 14 N -0.79 -34.14 10.97 21.86 0.24 -33.90 15 15 Si 0.99 31.06 29.60 68.60 2.03 33.10 15 16 H -0.25 -7.81 7.11 99.48 0.71 -7.10 15 17 H -0.26 -8.06 7.11 99.48 0.71 -7.35 15 18 H -0.27 -8.15 7.11 99.48 0.71 -7.44 15 19 C -0.19 -7.87 9.69 22.33 0.22 -7.66 15 20 C -0.06 -2.33 9.73 22.48 0.22 -2.11 15 21 C -0.20 -8.45 6.02 -20.07 -0.12 -8.57 15 22 H 0.17 2.67 8.06 -2.91 -0.02 2.65 15 23 H 0.12 5.48 6.15 -2.91 -0.02 5.46 15 24 H 0.30 11.54 8.29 -92.71 -0.77 10.77 15 25 H 0.12 4.67 8.06 -2.91 -0.02 4.64 15 26 H 0.11 4.18 8.01 -2.91 -0.02 4.15 15 Total: -1.00 -54.46 263.67 5.73 -48.73 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.24 Total: 9.80 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 3.23 Total: -25.30 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.59 Total: -52.29 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.05 Total: -18.12 kcal Atomic # 14 Polarization: 31.06 SS G_CDS: 2.03 Total: 33.10 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.31 Total: 4.09 kcal Total: -54.46 5.73 -48.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280434.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.626 kcal (2) G-P(sol) polarization free energy of solvation -54.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds