Wall clock time and date at job start Mon Mar 30 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38147 * 119.83731 * 125.25427 * 3 2 1 5 5 C 1.40767 * 119.85666 * 180.02562 * 4 3 2 6 6 C 1.41190 * 120.07312 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99585 * 28.78702 * 6 5 4 8 8 C 1.39876 * 120.00134 * 208.79222 * 6 5 4 9 9 N 1.30879 * 120.00036 * 12.68038 * 8 6 5 10 10 Si 1.86795 * 119.99973 * 192.68846 * 8 6 5 11 11 H 1.48499 * 109.47607 * 59.99757 * 10 8 6 12 12 H 1.48499 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47058 * 299.99794 * 10 8 6 14 14 C 1.40389 * 119.85759 * 359.95833 * 5 4 3 15 15 C 1.39077 * 120.50444 * 0.02591 * 14 5 4 16 16 S 1.75871 * 130.02008 * 180.26081 * 15 14 5 17 17 C 1.69990 * 93.10911 * 180.02562 * 16 15 14 18 18 C 1.36007 * 111.99656 * 359.67593 * 17 16 15 19 19 C 1.46126 * 123.15969 * 180.22038 * 18 17 16 20 20 O 1.21384 * 120.00059 * 354.96385 * 19 18 17 21 21 C 1.39776 * 119.97839 * 359.97438 * 15 14 5 22 22 H 1.07995 * 120.07020 * 359.94631 * 4 3 2 23 23 H 0.97001 * 119.99857 * 180.02562 * 9 8 6 24 24 H 1.07998 * 119.74991 * 180.02562 * 14 5 4 25 25 H 1.07995 * 124.00185 * 179.97438 * 17 16 15 26 26 H 1.08004 * 119.99876 * 174.95689 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2551 0.6926 -0.9786 5 6 4.6628 0.6931 -0.9793 6 6 5.3695 1.3984 -1.9775 7 1 4.9302 2.2727 -2.4345 8 6 6.6387 0.9646 -2.3747 9 7 7.0687 -0.2177 -2.0138 10 14 7.7197 2.0727 -3.4200 11 1 7.9855 3.3376 -2.6889 12 1 9.0054 1.3857 -3.7031 13 1 7.0279 2.3760 -4.6985 14 6 5.3624 -0.0089 0.0150 15 6 4.6754 -0.7068 1.0025 16 16 5.2877 -1.6529 2.3527 17 6 3.7286 -2.0486 2.9026 18 6 2.7589 -1.4980 2.1240 19 6 1.3313 -1.6778 2.3788 20 8 0.9618 -2.4184 3.2667 21 6 3.2776 -0.7121 1.0100 22 1 2.7134 1.2310 -1.7421 23 1 7.9490 -0.5183 -2.2889 24 1 6.4424 -0.0071 0.0130 25 1 3.5315 -2.6606 3.7703 26 1 0.6049 -1.1516 1.7772 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396280676.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:47 Heat of formation + Delta-G solvation = 25.834839 kcal Electronic energy + Delta-G solvation = -15383.727479 eV Core-core repulsion = 12711.621251 eV Total energy + Delta-G solvation = -2672.106228 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.26049 -38.05878 -36.07055 -35.02996 -33.13660 -30.30629 -29.42148 -25.88913 -25.12299 -22.89176 -21.40886 -19.31901 -19.25410 -17.12419 -15.96067 -15.69408 -15.45979 -15.07082 -14.26047 -14.05861 -13.97575 -13.55187 -13.35139 -12.64340 -12.44837 -12.39292 -12.30175 -11.78984 -11.39548 -11.36121 -11.00722 -10.96669 -10.38409 -10.28475 -9.96002 -9.47472 -9.36834 -8.77532 -7.82537 -7.16479 -7.09068 -4.76416 0.92863 1.83356 2.11601 2.15507 2.59006 2.84052 2.89650 2.91292 3.11854 3.38510 3.59485 3.67148 4.29478 4.51102 4.83016 5.09071 5.21916 5.58967 5.85467 6.20976 6.26691 6.39842 6.53415 6.67806 6.79978 6.97138 7.20504 7.38325 7.55364 7.73404 7.93251 8.04030 8.32929 8.38062 9.78940 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.006841 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.066329 B = 4091.866755 C = 5063.649561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.276 3.724 3 C 0.004 3.996 4 C -0.116 4.116 5 C 0.109 3.891 6 C -0.437 4.437 7 H 0.090 0.910 8 C 0.071 3.929 9 N -0.781 5.781 10 Si 0.918 3.082 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.262 1.262 14 C -0.113 4.113 15 C -0.109 4.109 16 S 0.130 5.870 17 C -0.195 4.195 18 C -0.176 4.176 19 C 0.392 3.608 20 O -0.478 6.478 21 C -0.127 4.127 22 H 0.119 0.881 23 H 0.289 0.711 24 H 0.133 0.867 25 H 0.162 0.838 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 0.828 1.882 3.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.037 4.037 3 C -0.002 4.002 4 C -0.138 4.138 5 C 0.103 3.897 6 C -0.466 4.466 7 H 0.108 0.892 8 C -0.149 4.149 9 N -0.405 5.405 10 Si 0.742 3.258 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.187 1.187 14 C -0.139 4.139 15 C -0.224 4.224 16 S 0.397 5.603 17 C -0.332 4.332 18 C -0.192 4.192 19 C 0.251 3.749 20 O -0.354 6.354 21 C -0.134 4.134 22 H 0.137 0.863 23 H 0.101 0.899 24 H 0.151 0.849 25 H 0.179 0.821 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.195 -0.139 2.896 3.637 hybrid contribution -0.413 0.664 -1.066 1.322 sum 1.782 0.526 1.831 2.608 Atomic orbital electron populations 1.81166 1.12186 1.10379 1.09646 1.26172 0.93168 0.92304 0.92050 1.15450 0.82469 1.03898 0.98420 1.21249 0.94735 1.00671 0.97162 1.17281 0.89764 0.91230 0.91430 1.19622 0.99802 1.10641 1.16535 0.89235 1.25988 0.98048 0.94893 0.96009 1.69751 1.18952 1.15888 1.35886 0.86174 0.78768 0.80594 0.80312 1.18471 1.20031 1.18668 1.20861 1.00054 1.00825 0.92170 1.22251 0.95148 1.04369 1.00640 1.82650 1.04744 1.49687 1.23226 1.25188 0.98007 1.05265 1.04699 1.20615 0.95734 1.04334 0.98539 1.23666 0.90097 0.78883 0.82260 1.90468 1.83412 1.32112 1.29404 1.18051 0.91666 1.05824 0.97871 0.86294 0.89939 0.84925 0.82059 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.72 17.51 41.84 0.73 -7.99 15 2 C 0.28 5.16 12.81 -22.47 -0.29 4.87 15 3 C 0.00 0.07 5.77 -106.35 -0.61 -0.54 15 4 C -0.12 -2.28 9.43 -38.66 -0.36 -2.65 15 5 C 0.11 2.35 5.53 -107.01 -0.59 1.76 15 6 C -0.44 -9.36 9.03 -37.85 -0.34 -9.70 15 7 H 0.09 1.79 7.88 -52.49 -0.41 1.38 15 8 C 0.07 1.47 5.20 -17.34 -0.09 1.38 15 9 N -0.78 -16.95 10.93 55.54 0.61 -16.34 15 10 Si 0.92 15.71 29.58 -169.99 -5.03 10.68 15 11 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 12 H -0.28 -4.68 7.11 56.52 0.40 -4.28 15 13 H -0.26 -4.49 7.11 56.52 0.40 -4.08 15 14 C -0.11 -2.43 8.67 -38.46 -0.33 -2.76 15 15 C -0.11 -2.21 6.42 -38.70 -0.25 -2.46 15 16 S 0.13 2.20 22.97 -107.50 -2.47 -0.27 15 17 C -0.19 -3.39 10.41 29.93 0.31 -3.07 15 18 C -0.18 -3.34 5.97 -104.48 -0.62 -3.96 15 19 C 0.39 7.37 10.98 33.89 0.37 7.74 15 20 O -0.48 -9.71 17.50 5.47 0.10 -9.62 15 21 C -0.13 -2.54 6.03 -104.62 -0.63 -3.17 15 22 H 0.12 2.11 8.06 -52.49 -0.42 1.69 15 23 H 0.29 5.74 8.30 -40.82 -0.34 5.40 15 24 H 0.13 2.94 6.24 -52.49 -0.33 2.61 15 25 H 0.16 2.52 7.98 -52.49 -0.42 2.10 15 26 H 0.09 1.71 4.74 -52.48 -0.25 1.46 15 LS Contribution 259.25 15.07 3.91 3.91 Total: -1.00 -23.39 259.25 -6.56 -29.96 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -0.97 Total: 2.23 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.44 Total: -12.56 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 1.34 Total: -24.33 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.10 Total: -9.62 kcal Atomic # 14 Polarization: 15.71 SS G_CDS: -5.03 Total: 10.68 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.27 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -23.39 -6.56 -29.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280676.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.793 kcal (2) G-P(sol) polarization free energy of solvation -23.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds