Wall clock time and date at job start Mon Mar 30 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39692 * 119.75390 * 278.09936 * 3 2 1 5 5 C 1.36177 * 120.59276 * 180.02562 * 4 3 2 6 6 C 1.40700 * 120.23013 * 359.95491 * 5 4 3 7 7 C 1.40541 * 119.95934 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00449 * 150.17717 * 7 6 5 9 9 C 1.40254 * 119.99744 * 330.18503 * 7 6 5 10 10 N 1.30660 * 119.99862 * 348.97841 * 9 7 6 11 11 Si 1.86799 * 119.99890 * 168.97464 * 9 7 6 12 12 H 1.48507 * 109.47422 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47099 * 119.99988 * 11 9 7 14 14 H 1.48503 * 109.47465 * 239.99884 * 11 9 7 15 15 C 1.42380 * 120.08535 * 0.04165 * 6 5 4 16 16 S 1.75770 * 130.39640 * 180.02562 * 15 6 5 17 17 C 1.70024 * 93.07565 * 179.97438 * 16 15 6 18 18 C 1.35610 * 111.90772 * 0.02562 * 17 16 15 19 19 C 1.41759 * 123.19331 * 180.02562 * 18 17 16 20 20 O 1.21407 * 119.99970 * 6.83988 * 19 18 17 21 21 C 1.38800 * 119.48358 * 359.72303 * 15 6 5 22 22 H 1.08002 * 119.71000 * 359.97312 * 4 3 2 23 23 H 1.07995 * 119.88641 * 179.97438 * 5 4 3 24 24 H 0.97004 * 119.99503 * 180.02562 * 10 9 7 25 25 H 1.07994 * 124.05134 * 180.02562 * 17 16 15 26 26 H 1.08003 * 120.00266 * 186.84670 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2614 -0.1699 1.2007 5 6 4.6230 -0.1716 1.2205 6 6 5.3490 -0.0019 0.0273 7 6 6.7542 -0.0051 0.0542 8 1 7.3100 -0.3528 -0.8040 9 6 7.4346 0.4431 1.1958 10 7 6.7824 1.0607 2.1447 11 14 9.2733 0.1571 1.3596 12 1 9.7718 -0.5597 0.1582 13 1 9.9687 1.4637 1.4810 14 1 9.5413 -0.6606 2.5699 15 6 4.6620 0.1735 -1.2074 16 16 5.2849 0.4042 -2.8348 17 6 3.7296 0.5003 -3.5150 18 6 2.7584 0.3678 -2.5778 19 6 1.3747 0.4103 -2.8828 20 8 1.0089 0.4469 -4.0398 21 6 3.2741 0.1696 -1.2235 22 1 2.7127 -0.3008 2.1217 23 1 5.1474 -0.3040 2.1552 24 1 7.2532 1.3710 2.9341 25 1 3.5379 0.6490 -4.5673 26 1 0.6458 0.4103 -2.0858 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396280684.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:36 Heat of formation + Delta-G solvation = 24.084411 kcal Electronic energy + Delta-G solvation = -15487.040465 eV Core-core repulsion = 12814.858333 eV Total energy + Delta-G solvation = -2672.182132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32401 -37.95243 -35.74352 -35.01261 -33.41840 -30.61162 -28.59046 -26.70313 -25.28417 -22.34248 -21.43123 -19.38314 -18.63543 -17.81711 -15.95146 -15.57984 -15.38360 -15.06100 -14.16241 -13.98546 -13.89364 -13.49730 -13.07452 -12.72867 -12.31466 -12.22427 -11.91741 -11.76273 -11.57697 -11.49221 -11.05853 -10.73410 -10.43916 -10.30321 -9.89303 -9.69217 -9.27419 -8.57515 -7.84065 -7.37289 -7.15576 -4.97113 0.94081 1.95241 2.16500 2.29632 2.69672 2.74427 2.78800 2.84191 3.50020 3.52335 3.54504 3.70624 4.36534 4.96803 5.08379 5.11089 5.20292 5.69756 5.85279 6.11301 6.30085 6.42056 6.57842 6.63472 6.87767 7.00606 7.32373 7.45587 7.58287 7.88868 7.98646 8.14467 8.22564 8.42012 9.53861 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.007428 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.635356 B = 3768.479637 C = 4757.190629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.288 3.712 3 C -0.179 4.179 4 C -0.018 4.018 5 C -0.177 4.177 6 C 0.171 3.829 7 C -0.421 4.421 8 H 0.092 0.908 9 C 0.072 3.928 10 N -0.755 5.755 11 Si 0.920 3.080 12 H -0.254 1.254 13 H -0.268 1.268 14 H -0.265 1.265 15 C -0.249 4.249 16 S 0.190 5.810 17 C -0.158 4.158 18 C -0.228 4.228 19 C 0.394 3.606 20 O -0.489 6.489 21 C 0.044 3.956 22 H 0.106 0.894 23 H 0.133 0.867 24 H 0.294 0.706 25 H 0.166 0.834 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -0.765 -1.434 5.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.021 4.021 3 C -0.188 4.188 4 C -0.039 4.039 5 C -0.199 4.199 6 C 0.164 3.836 7 C -0.448 4.448 8 H 0.110 0.890 9 C -0.152 4.152 10 N -0.376 5.376 11 Si 0.742 3.258 12 H -0.177 1.177 13 H -0.192 1.192 14 H -0.190 1.190 15 C -0.364 4.364 16 S 0.459 5.541 17 C -0.297 4.297 18 C -0.246 4.246 19 C 0.255 3.745 20 O -0.368 6.368 21 C 0.036 3.964 22 H 0.124 0.876 23 H 0.151 0.849 24 H 0.105 0.895 25 H 0.184 0.816 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.712 -0.522 -2.438 5.331 hybrid contribution -0.230 -0.044 0.891 0.921 sum 4.482 -0.566 -1.548 4.775 Atomic orbital electron populations 1.81133 1.12376 1.15348 1.09072 1.26010 0.92915 0.91398 0.91809 1.15003 0.82670 1.28087 0.93023 1.20253 0.94614 0.94780 0.94300 1.20752 0.91918 1.08546 0.98729 1.17139 0.92967 0.85254 0.88206 1.19914 0.91475 1.33115 1.00319 0.88990 1.26155 1.02519 0.92303 0.94235 1.69700 1.39443 1.22021 1.06459 0.86026 0.79910 0.79627 0.80191 1.17730 1.19238 1.19014 1.22608 0.94927 1.21234 0.97655 1.82473 1.03339 1.69792 0.98482 1.25631 0.99281 1.00987 1.03772 1.19801 0.96680 1.14954 0.93175 1.22436 0.90417 0.70183 0.91505 1.90462 1.83968 1.37737 1.24589 1.18323 0.91690 0.96372 0.90063 0.87566 0.84908 0.89485 0.81629 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.47 17.59 41.84 0.74 -9.73 15 2 C 0.29 5.85 12.81 -22.47 -0.29 5.56 15 3 C -0.18 -3.66 5.81 -105.88 -0.62 -4.28 15 4 C -0.02 -0.36 9.62 -39.78 -0.38 -0.74 15 5 C -0.18 -3.72 8.55 -39.39 -0.34 -4.06 15 6 C 0.17 3.70 5.56 -106.51 -0.59 3.11 15 7 C -0.42 -8.83 8.78 -37.96 -0.33 -9.16 15 8 H 0.09 1.83 7.80 -52.49 -0.41 1.42 15 9 C 0.07 1.43 5.23 -17.29 -0.09 1.34 15 10 N -0.75 -15.55 10.89 55.56 0.60 -14.94 15 11 Si 0.92 14.89 29.58 -169.99 -5.03 9.87 15 12 H -0.25 -4.10 7.11 56.52 0.40 -3.70 15 13 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 14 H -0.27 -4.26 7.11 56.52 0.40 -3.86 15 15 C -0.25 -5.14 6.34 -37.78 -0.24 -5.38 15 16 S 0.19 3.25 22.61 -107.50 -2.43 0.82 15 17 C -0.16 -2.75 10.34 29.79 0.31 -2.45 15 18 C -0.23 -4.46 5.82 -106.27 -0.62 -5.08 15 19 C 0.39 7.80 10.81 32.08 0.35 8.15 15 20 O -0.49 -10.36 17.39 5.45 0.09 -10.26 15 21 C 0.04 0.91 6.01 -104.92 -0.63 0.28 15 22 H 0.11 1.86 8.06 -52.49 -0.42 1.43 15 23 H 0.13 2.81 6.25 -52.49 -0.33 2.48 15 24 H 0.29 5.39 8.29 -40.82 -0.34 5.06 15 25 H 0.17 2.54 7.93 -52.49 -0.42 2.13 15 26 H 0.09 1.81 4.77 -52.48 -0.25 1.56 15 LS Contribution 258.14 15.07 3.89 3.89 Total: -1.00 -23.93 258.14 -6.57 -30.50 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -0.96 Total: 2.58 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.47 Total: -12.71 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 1.34 Total: -24.67 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 14.89 SS G_CDS: -5.03 Total: 9.87 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.43 Total: 0.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -23.93 -6.57 -30.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280684.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.580 kcal (2) G-P(sol) polarization free energy of solvation -23.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds