Wall clock time and date at job start Mon Mar 30 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39692 * 119.75390 * 278.09936 * 3 2 1 5 5 C 1.36177 * 120.59276 * 180.02562 * 4 3 2 6 6 C 1.40700 * 120.23013 * 359.95491 * 5 4 3 7 7 C 1.40541 * 119.95934 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00449 * 150.17717 * 7 6 5 9 9 C 1.40254 * 119.99744 * 330.18503 * 7 6 5 10 10 N 1.30660 * 119.99862 * 348.97841 * 9 7 6 11 11 Si 1.86799 * 119.99890 * 168.97464 * 9 7 6 12 12 H 1.48507 * 109.47422 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47099 * 119.99988 * 11 9 7 14 14 H 1.48503 * 109.47465 * 239.99884 * 11 9 7 15 15 C 1.42380 * 120.08535 * 0.04165 * 6 5 4 16 16 S 1.75770 * 130.39640 * 180.02562 * 15 6 5 17 17 C 1.70024 * 93.07565 * 179.97438 * 16 15 6 18 18 C 1.35610 * 111.90772 * 0.02562 * 17 16 15 19 19 C 1.41759 * 123.19331 * 180.02562 * 18 17 16 20 20 O 1.21407 * 119.99970 * 6.83988 * 19 18 17 21 21 C 1.38800 * 119.48358 * 359.72303 * 15 6 5 22 22 H 1.08002 * 119.71000 * 359.97312 * 4 3 2 23 23 H 1.07995 * 119.88641 * 179.97438 * 5 4 3 24 24 H 0.97004 * 119.99503 * 180.02562 * 10 9 7 25 25 H 1.07994 * 124.05134 * 180.02562 * 17 16 15 26 26 H 1.08003 * 120.00266 * 186.84670 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2614 -0.1699 1.2007 5 6 4.6230 -0.1716 1.2205 6 6 5.3490 -0.0019 0.0273 7 6 6.7542 -0.0051 0.0542 8 1 7.3100 -0.3528 -0.8040 9 6 7.4346 0.4431 1.1958 10 7 6.7824 1.0607 2.1447 11 14 9.2733 0.1571 1.3596 12 1 9.7718 -0.5597 0.1582 13 1 9.9687 1.4637 1.4810 14 1 9.5413 -0.6606 2.5699 15 6 4.6620 0.1735 -1.2074 16 16 5.2849 0.4042 -2.8348 17 6 3.7296 0.5003 -3.5150 18 6 2.7584 0.3678 -2.5778 19 6 1.3747 0.4103 -2.8828 20 8 1.0089 0.4469 -4.0398 21 6 3.2741 0.1696 -1.2235 22 1 2.7127 -0.3008 2.1217 23 1 5.1474 -0.3040 2.1552 24 1 7.2532 1.3710 2.9341 25 1 3.5379 0.6490 -4.5673 26 1 0.6458 0.4103 -2.0858 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396280684.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:36 Heat of formation + Delta-G solvation = 13.716799 kcal Electronic energy + Delta-G solvation = -15487.490039 eV Core-core repulsion = 12814.858333 eV Total energy + Delta-G solvation = -2672.631706 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86805 -39.51948 -37.36057 -36.54665 -34.95346 -32.18700 -30.12299 -28.26580 -26.80959 -23.90445 -22.99120 -20.91077 -20.17160 -19.37358 -17.49234 -17.11225 -16.87432 -16.51841 -15.68691 -15.50478 -15.43757 -15.01315 -14.68158 -14.23404 -13.88537 -13.78732 -13.40977 -13.26716 -13.10198 -12.85630 -12.51204 -12.15654 -11.94434 -11.78789 -11.40058 -11.18248 -10.83707 -10.10642 -9.38677 -8.87707 -8.65482 -6.56426 -0.54413 0.37878 0.71490 0.73917 1.19972 1.43781 1.47251 1.61070 1.90882 1.99916 2.12720 2.18529 2.80615 3.39462 3.49711 3.59380 3.71836 4.19079 4.42453 4.58470 4.78225 4.90271 5.04861 5.09446 5.32396 5.42605 5.75375 5.88077 5.99314 6.34341 6.41204 6.57452 6.64163 6.81404 8.06791 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.007428 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.635356 B = 3768.479637 C = 4757.190629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.298 3.702 3 C -0.194 4.194 4 C -0.015 4.015 5 C -0.194 4.194 6 C 0.151 3.849 7 C -0.437 4.437 8 H 0.099 0.901 9 C 0.041 3.959 10 N -0.780 5.780 11 Si 0.985 3.015 12 H -0.251 1.251 13 H -0.266 1.266 14 H -0.263 1.263 15 C -0.281 4.281 16 S 0.256 5.744 17 C -0.143 4.143 18 C -0.256 4.256 19 C 0.402 3.598 20 O -0.508 6.508 21 C 0.037 3.963 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.303 0.697 25 H 0.191 0.809 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -0.744 -2.077 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.011 4.011 3 C -0.203 4.203 4 C -0.036 4.036 5 C -0.216 4.216 6 C 0.145 3.855 7 C -0.463 4.463 8 H 0.117 0.883 9 C -0.181 4.181 10 N -0.401 5.401 11 Si 0.805 3.195 12 H -0.174 1.174 13 H -0.190 1.190 14 H -0.187 1.187 15 C -0.397 4.397 16 S 0.526 5.474 17 C -0.282 4.282 18 C -0.274 4.274 19 C 0.264 3.736 20 O -0.388 6.388 21 C 0.029 3.971 22 H 0.142 0.858 23 H 0.144 0.856 24 H 0.114 0.886 25 H 0.208 0.792 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.365 -0.502 -3.068 7.083 hybrid contribution -0.662 -0.028 1.077 1.264 sum 5.703 -0.529 -1.991 6.064 Atomic orbital electron populations 1.81130 1.12657 1.16087 1.09577 1.25972 0.92789 0.90964 0.91361 1.15118 0.82655 1.29077 0.93468 1.20413 0.94404 0.93823 0.94920 1.20755 0.92387 1.09891 0.98614 1.17427 0.93670 0.85550 0.88861 1.20194 0.91491 1.33341 1.01297 0.88282 1.26901 1.06219 0.91525 0.93492 1.69725 1.41254 1.22126 1.07029 0.85065 0.74882 0.79423 0.80165 1.17363 1.19018 1.18698 1.22930 0.95360 1.21877 0.99484 1.82202 1.01999 1.67807 0.95402 1.26010 0.99270 0.98244 1.04687 1.19734 0.96851 1.17625 0.93182 1.22339 0.90644 0.69529 0.91076 1.90450 1.84177 1.39228 1.24970 1.18526 0.92006 0.96005 0.90609 0.85771 0.85554 0.88564 0.79213 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.52 17.59 19.00 0.33 -21.19 15 2 C 0.30 12.10 12.81 88.33 1.13 13.23 15 3 C -0.19 -7.96 5.81 -20.68 -0.12 -8.08 15 4 C -0.01 -0.58 9.62 22.14 0.21 -0.36 15 5 C -0.19 -8.22 8.55 22.39 0.19 -8.03 15 6 C 0.15 6.51 5.56 -21.09 -0.12 6.40 15 7 C -0.44 -17.91 8.78 23.32 0.20 -17.71 15 8 H 0.10 3.79 7.80 -2.91 -0.02 3.77 15 9 C 0.04 1.57 5.23 85.36 0.45 2.01 15 10 N -0.78 -31.69 10.89 21.88 0.24 -31.45 15 11 Si 0.98 29.04 29.58 68.60 2.03 31.07 15 12 H -0.25 -7.19 7.11 99.48 0.71 -6.48 15 13 H -0.27 -7.71 7.11 99.48 0.71 -7.01 15 14 H -0.26 -7.58 7.11 99.48 0.71 -6.87 15 15 C -0.28 -11.39 6.34 23.44 0.15 -11.24 15 16 S 0.26 8.17 22.61 -56.49 -1.28 6.89 15 17 C -0.14 -4.66 10.34 67.21 0.69 -3.96 15 18 C -0.26 -9.75 5.82 -20.93 -0.12 -9.87 15 19 C 0.40 15.72 10.81 68.69 0.74 16.46 15 20 O -0.51 -21.10 17.39 -3.42 -0.06 -21.16 15 21 C 0.04 1.52 6.01 -20.05 -0.12 1.40 15 22 H 0.12 4.32 8.06 -2.91 -0.02 4.30 15 23 H 0.13 5.42 6.25 -2.91 -0.02 5.40 15 24 H 0.30 10.90 8.29 -92.71 -0.77 10.13 15 25 H 0.19 5.22 7.93 -2.91 -0.02 5.19 15 26 H 0.09 3.45 4.77 -2.91 -0.01 3.44 15 Total: -1.00 -49.52 258.14 5.81 -43.71 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.25 Total: 11.88 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 3.29 Total: -19.75 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.57 Total: -52.64 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 14 Polarization: 29.04 SS G_CDS: 2.03 Total: 31.07 kcal Atomic # 16 Polarization: 8.17 SS G_CDS: -1.28 Total: 6.89 kcal Total: -49.52 5.81 -43.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280684.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.428 kcal (2) G-P(sol) polarization free energy of solvation -49.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds