Wall clock time and date at job start Mon Mar 30 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.37943 * 120.30333 * 354.05179 * 3 2 1 5 5 C 1.41937 * 120.62283 * 179.97438 * 4 3 2 6 6 C 1.39647 * 127.62894 * 180.02562 * 5 4 3 7 7 C 1.37119 * 115.11127 * 179.97438 * 6 5 4 8 8 C 1.39758 * 124.82008 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00195 * 353.30086 * 8 7 6 10 10 C 1.40415 * 120.00326 * 173.30391 * 8 7 6 11 11 N 1.30604 * 119.99576 * 6.60052 * 10 8 7 12 12 Si 1.86798 * 120.00522 * 186.60105 * 10 8 7 13 13 H 1.48498 * 109.46890 * 94.98428 * 12 10 8 14 14 H 1.48500 * 109.47156 * 214.98479 * 12 10 8 15 15 H 1.48506 * 109.46984 * 334.98389 * 12 10 8 16 16 S 1.75396 * 110.35431 * 0.02562 * 7 6 5 17 17 C 1.40657 * 119.53100 * 359.97438 * 5 4 3 18 18 C 1.39419 * 120.67365 * 0.02562 * 17 5 4 19 19 C 1.39158 * 120.64137 * 359.97438 * 18 17 5 20 20 C 1.46670 * 120.43599 * 180.02562 * 19 18 17 21 21 O 1.21334 * 119.99750 * 0.02562 * 20 19 18 22 22 H 1.07997 * 119.69017 * 0.23549 * 4 3 2 23 23 H 1.07998 * 122.44156 * 359.97438 * 6 5 4 24 24 H 0.97004 * 120.00139 * 180.02562 * 11 10 8 25 25 H 1.08001 * 119.68096 * 179.97438 * 18 17 5 26 26 H 1.07994 * 120.00667 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2646 -1.1836 0.1234 5 6 4.6840 -1.1909 0.1237 6 6 5.5309 -2.2953 0.2382 7 6 6.8710 -2.0066 0.2072 8 6 7.8938 -2.9539 0.3058 9 1 7.6561 -3.9847 0.5235 10 6 9.2306 -2.5655 0.1217 11 7 9.5307 -1.3016 -0.0131 12 14 10.5797 -3.8565 0.0697 13 1 10.8619 -4.2209 -1.3419 14 1 11.8109 -3.3112 0.6958 15 1 10.1387 -5.0635 0.8140 16 16 7.1190 -0.2796 0.0277 17 6 5.3835 0.0227 -0.0038 18 6 4.6970 1.2296 -0.1296 19 6 3.3056 1.2572 -0.1320 20 6 2.5880 2.5294 -0.2652 21 8 3.2075 3.5668 -0.3747 22 1 2.7249 -2.1144 0.2165 23 1 5.1575 -3.3032 0.3436 24 1 10.4541 -1.0332 -0.1406 25 1 5.2503 2.1521 -0.2261 26 1 1.5081 2.5427 -0.2666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396280713.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:07 Heat of formation + Delta-G solvation = 6.169477 kcal Electronic energy + Delta-G solvation = -14994.827002 eV Core-core repulsion = 12321.868020 eV Total energy + Delta-G solvation = -2672.958982 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02711 -37.67271 -36.31025 -35.17323 -33.30776 -30.53536 -29.69384 -26.53744 -24.11357 -22.89361 -20.90141 -20.04952 -18.34750 -17.45705 -16.62261 -15.66734 -15.27118 -14.75154 -14.04420 -13.94718 -13.71562 -13.23180 -13.21932 -12.94957 -12.70654 -12.48552 -12.34307 -11.92515 -11.80359 -11.64239 -10.97805 -10.71220 -10.52717 -10.27193 -9.59259 -9.41179 -9.26463 -8.87746 -7.76744 -7.55798 -6.77729 -5.06083 0.99233 1.60162 2.41774 2.65575 2.73311 2.82648 2.91093 2.94761 3.31395 3.32196 3.50431 3.55408 4.30600 4.33965 4.72239 4.81611 5.32889 5.73240 6.02238 6.07712 6.27900 6.33035 6.58266 6.61544 6.87636 6.94292 7.08436 7.27147 7.48716 7.59923 7.77237 7.87481 7.95864 7.98523 9.25760 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.005372 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.904491 B = 5210.699676 C = 5920.985386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.271 3.729 3 C 0.010 3.990 4 C -0.090 4.090 5 C 0.036 3.964 6 C -0.343 4.343 7 C 0.048 3.952 8 C -0.354 4.354 9 H 0.107 0.893 10 C 0.049 3.951 11 N -0.754 5.754 12 Si 0.943 3.057 13 H -0.260 1.260 14 H -0.268 1.268 15 H -0.253 1.253 16 S 0.161 5.839 17 C -0.282 4.282 18 C 0.039 3.961 19 C -0.257 4.257 20 C 0.387 3.613 21 O -0.490 6.490 22 H 0.119 0.881 23 H 0.115 0.885 24 H 0.308 0.692 25 H 0.122 0.878 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -2.065 0.064 2.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.043 4.043 3 C 0.003 3.997 4 C -0.113 4.113 5 C 0.027 3.973 6 C -0.367 4.367 7 C -0.072 4.072 8 C -0.388 4.388 9 H 0.125 0.875 10 C -0.176 4.176 11 N -0.379 5.379 12 Si 0.765 3.235 13 H -0.185 1.185 14 H -0.192 1.192 15 H -0.176 1.176 16 S 0.423 5.577 17 C -0.397 4.397 18 C 0.017 3.983 19 C -0.263 4.263 20 C 0.251 3.749 21 O -0.368 6.368 22 H 0.137 0.863 23 H 0.133 0.867 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.602 -0.450 -0.114 1.668 hybrid contribution -0.341 -1.609 0.064 1.646 sum 1.262 -2.059 -0.050 2.415 Atomic orbital electron populations 1.81177 1.12131 1.08475 1.10356 1.25894 0.92783 0.92757 0.92850 1.16498 0.82781 0.94193 1.06207 1.20794 0.92758 0.95501 1.02245 1.17950 0.91945 0.92633 0.94795 1.19780 0.91058 0.97377 1.28445 1.21583 0.95474 0.95911 0.94278 1.19610 0.89408 0.96950 1.32819 0.87507 1.26506 1.01471 0.97230 0.92411 1.68592 1.23561 1.17041 1.28677 0.85648 0.77872 0.79788 0.80199 1.18475 1.19218 1.17626 1.85007 0.94460 1.01832 1.76430 1.23665 1.02784 0.95978 1.17252 1.20405 0.91901 0.95811 0.90203 1.20693 0.93465 0.92469 1.19678 1.23412 0.93966 0.86837 0.70676 1.90475 1.72607 1.35364 1.38334 0.86268 0.86662 0.87785 0.85980 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.78 18.54 41.84 0.78 -7.01 15 2 C 0.27 4.53 14.15 -22.47 -0.32 4.21 15 3 C 0.01 0.17 5.89 -104.84 -0.62 -0.45 15 4 C -0.09 -1.63 9.74 -38.27 -0.37 -2.00 15 5 C 0.04 0.74 5.84 -107.04 -0.62 0.12 15 6 C -0.34 -7.36 10.11 -39.46 -0.40 -7.76 15 7 C 0.05 1.07 6.10 -39.42 -0.24 0.83 15 8 C -0.35 -7.45 9.26 -38.19 -0.35 -7.81 15 9 H 0.11 2.08 7.86 -52.48 -0.41 1.67 15 10 C 0.05 0.95 5.49 -17.25 -0.09 0.85 15 11 N -0.75 -15.26 10.62 55.57 0.59 -14.67 15 12 Si 0.94 14.47 29.57 -169.99 -5.03 9.44 15 13 H -0.26 -4.00 7.11 56.52 0.40 -3.60 15 14 H -0.27 -4.04 7.11 56.52 0.40 -3.64 15 15 H -0.25 -3.84 7.11 56.52 0.40 -3.43 15 16 S 0.16 3.46 20.17 -107.50 -2.17 1.29 15 17 C -0.28 -5.93 6.44 -38.23 -0.25 -6.18 15 18 C 0.04 0.76 9.60 -38.80 -0.37 0.39 15 19 C -0.26 -4.70 6.04 -102.91 -0.62 -5.32 15 20 C 0.39 6.65 11.06 34.13 0.38 7.03 15 21 O -0.49 -9.68 17.16 5.51 0.09 -9.58 15 22 H 0.12 1.90 8.06 -52.49 -0.42 1.48 15 23 H 0.12 2.31 8.06 -52.49 -0.42 1.88 15 24 H 0.31 5.51 8.29 -40.82 -0.34 5.17 15 25 H 0.12 2.32 7.62 -52.49 -0.40 1.92 15 26 H 0.08 1.17 7.32 -52.49 -0.38 0.78 15 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -23.57 264.31 -6.81 -30.38 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -1.18 Total: 2.24 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.88 Total: -16.08 kcal Atomic # 7 Polarization: -23.04 SS G_CDS: 1.37 Total: -21.68 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 14.47 SS G_CDS: -5.03 Total: 9.44 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.17 Total: 1.29 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -23.57 -6.81 -30.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396280713.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.553 kcal (2) G-P(sol) polarization free energy of solvation -23.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds