Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39374 * 119.95821 * 60.98026 * 3 2 1 5 5 C 1.39418 * 120.67611 * 179.97438 * 4 3 2 6 6 S 1.75846 * 129.98718 * 180.02562 * 5 4 3 7 7 C 1.69981 * 93.19750 * 179.97438 * 6 5 4 8 8 C 1.36752 * 111.88602 * 359.97438 * 7 6 5 9 9 C 1.40978 * 123.27373 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00535 * 138.60202 * 9 8 7 11 11 C 1.39715 * 119.99735 * 318.59576 * 9 8 7 12 12 N 1.31061 * 119.99934 * 4.65437 * 11 9 8 13 13 Si 1.86802 * 120.00024 * 184.64505 * 11 9 8 14 14 H 1.48501 * 109.47029 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46673 * 120.00539 * 13 11 9 16 16 H 1.48494 * 109.47278 * 240.00279 * 13 11 9 17 17 C 1.39465 * 119.86005 * 0.02794 * 5 4 3 18 18 C 1.42369 * 119.34711 * 0.02562 * 17 5 4 19 19 C 1.46799 * 119.93240 * 179.97438 * 18 17 5 20 20 O 1.21304 * 119.99847 * 174.46508 * 19 18 17 21 21 C 1.38930 * 120.12829 * 0.25346 * 18 17 5 22 22 H 1.08004 * 119.66488 * 0.02562 * 4 3 2 23 23 H 1.07994 * 124.05779 * 179.97438 * 7 6 5 24 24 H 0.96999 * 120.00180 * 179.97438 * 12 11 9 25 25 H 1.08001 * 120.00532 * 354.74063 * 19 18 17 26 26 H 1.08006 * 120.04811 * 179.75112 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2643 -0.5848 -1.0559 5 6 4.6583 -0.5922 -1.0715 6 16 5.7717 -1.2515 -2.2623 7 6 7.1454 -0.7644 -1.3876 8 6 6.8100 -0.1211 -0.2284 9 6 7.7629 0.3845 0.6792 10 1 7.6102 1.3485 1.1415 11 6 8.9049 -0.3617 0.9808 12 7 9.1362 -1.4885 0.3527 13 14 10.1023 0.2467 2.2791 14 1 9.6159 1.5344 2.8364 15 1 10.2031 -0.7573 3.3687 16 1 11.4394 0.4463 1.6647 17 6 5.3676 -0.0095 -0.0215 18 6 4.6538 0.5869 1.0564 19 6 5.3874 1.2034 2.1685 20 8 4.7846 1.7993 3.0363 21 6 3.2645 0.5813 1.0607 22 1 2.7183 -1.0367 -1.8709 23 1 8.1611 -0.9418 -1.7087 24 1 9.9293 -2.0064 0.5618 25 1 6.4641 1.1303 2.2118 26 1 2.7244 1.0305 1.8810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281210.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = 29.083206 kcal Electronic energy + Delta-G solvation = -15467.785455 eV Core-core repulsion = 12795.820087 eV Total energy + Delta-G solvation = -2671.965368 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58221 -37.81284 -36.53951 -34.99904 -32.59090 -31.03318 -29.09003 -26.68228 -23.98262 -23.56284 -21.24574 -20.09477 -18.48591 -17.13755 -16.33038 -15.62042 -15.23520 -14.80957 -14.50283 -14.11593 -13.98498 -13.43903 -13.26592 -13.16375 -12.56364 -12.49713 -12.11839 -11.70911 -11.56281 -11.38564 -11.07235 -10.85589 -10.38082 -10.22905 -9.88020 -9.49489 -8.96551 -8.88783 -7.82626 -6.92720 -6.83342 -4.63459 0.74534 1.23128 2.32591 2.58133 2.85260 2.86560 3.02766 3.05856 3.21640 3.31818 3.62071 3.87185 4.08455 4.26712 4.81889 4.91427 5.18392 5.37952 5.54746 5.80630 5.89772 6.17164 6.37388 6.49100 6.57828 6.93295 7.03522 7.27891 7.60905 7.63870 7.96853 8.09104 8.46003 8.66483 10.16165 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.007886 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.509891 B = 3549.727826 C = 4694.005006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.272 3.728 3 C -0.064 4.064 4 C 0.001 3.999 5 C -0.173 4.173 6 S 0.072 5.928 7 C -0.288 4.288 8 C 0.067 3.933 9 C -0.464 4.464 10 H 0.086 0.914 11 C 0.074 3.926 12 N -0.811 5.811 13 Si 0.908 3.092 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.273 1.273 17 C 0.012 3.988 18 C -0.152 4.152 19 C 0.373 3.627 20 O -0.486 6.486 21 C -0.030 4.030 22 H 0.129 0.871 23 H 0.161 0.839 24 H 0.279 0.721 25 H 0.141 0.859 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 0.449 -1.920 2.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.043 4.043 3 C -0.071 4.071 4 C -0.025 4.025 5 C -0.289 4.289 6 S 0.337 5.663 7 C -0.424 4.424 8 C 0.058 3.942 9 C -0.498 4.498 10 H 0.103 0.897 11 C -0.141 4.141 12 N -0.438 5.438 13 Si 0.733 3.267 14 H -0.182 1.182 15 H -0.198 1.198 16 H -0.199 1.199 17 C 0.000 4.000 18 C -0.155 4.155 19 C 0.235 3.765 20 O -0.362 6.362 21 C -0.054 4.054 22 H 0.147 0.853 23 H 0.179 0.821 24 H 0.090 0.910 25 H 0.157 0.843 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.731 -0.206 -2.881 4.718 hybrid contribution 1.390 0.601 1.766 2.326 sum -2.342 0.395 -1.115 2.623 Atomic orbital electron populations 1.81197 1.12039 1.09897 1.08408 1.25640 0.92487 0.92945 0.93186 1.15474 0.83928 1.08894 0.98756 1.20542 0.91540 0.94477 0.95896 1.22498 0.96413 1.08002 1.01943 1.82203 0.96310 1.62968 1.24792 1.24797 1.00520 1.17626 0.99454 1.17306 0.87430 0.96694 0.92732 1.18944 1.03210 1.04521 1.23096 0.89660 1.25703 0.97620 0.94172 0.96652 1.69806 1.25291 1.11786 1.36883 0.86235 0.80089 0.79988 0.80424 1.18234 1.19815 1.19876 1.20191 0.95125 0.93127 0.91594 1.20532 0.92887 1.04110 0.97928 1.25174 0.97238 0.73303 0.80826 1.90431 1.74227 1.33964 1.37598 1.21072 0.93192 0.94978 0.96159 0.85297 0.82145 0.91011 0.84297 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.34 18.54 41.84 0.78 -6.57 15 2 C 0.27 4.18 15.31 -22.47 -0.34 3.84 15 3 C -0.06 -0.99 5.72 -107.06 -0.61 -1.60 15 4 C 0.00 0.02 9.75 -38.72 -0.38 -0.36 15 5 C -0.17 -3.13 6.42 -38.69 -0.25 -3.38 15 6 S 0.07 1.30 22.97 -107.50 -2.47 -1.17 15 7 C -0.29 -6.23 9.48 30.19 0.29 -5.94 15 8 C 0.07 1.49 5.52 -106.23 -0.59 0.90 15 9 C -0.46 -10.31 7.31 -37.99 -0.28 -10.59 15 10 H 0.09 1.77 5.87 -52.49 -0.31 1.47 15 11 C 0.07 1.65 5.45 -17.33 -0.09 1.56 15 12 N -0.81 -18.91 11.40 55.54 0.63 -18.28 15 13 Si 0.91 17.01 29.56 -169.99 -5.03 11.98 15 14 H -0.26 -4.74 7.11 56.52 0.40 -4.33 15 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 16 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 17 C 0.01 0.25 6.03 -104.68 -0.63 -0.39 15 18 C -0.15 -2.78 5.91 -104.59 -0.62 -3.39 15 19 C 0.37 6.88 10.86 34.19 0.37 7.25 15 20 O -0.49 -9.60 17.14 5.54 0.09 -9.51 15 21 C -0.03 -0.49 9.26 -38.84 -0.36 -0.85 15 22 H 0.13 1.63 8.06 -52.48 -0.42 1.21 15 23 H 0.16 3.71 7.09 -52.49 -0.37 3.34 15 24 H 0.28 6.05 8.30 -40.82 -0.34 5.71 15 25 H 0.14 2.56 4.35 -52.49 -0.23 2.34 15 26 H 0.14 2.08 7.62 -52.48 -0.40 1.68 15 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -24.23 259.22 -6.44 -30.67 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -0.87 Total: 1.92 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.49 Total: -12.95 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 1.41 Total: -24.85 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.47 Total: -1.17 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -24.23 -6.44 -30.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281210.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.753 kcal (2) G-P(sol) polarization free energy of solvation -24.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds