Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39374 * 119.95821 * 60.98026 * 3 2 1 5 5 C 1.39418 * 120.67611 * 179.97438 * 4 3 2 6 6 S 1.75846 * 129.98718 * 180.02562 * 5 4 3 7 7 C 1.69981 * 93.19750 * 179.97438 * 6 5 4 8 8 C 1.36752 * 111.88602 * 359.97438 * 7 6 5 9 9 C 1.40978 * 123.27373 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00535 * 138.60202 * 9 8 7 11 11 C 1.39715 * 119.99735 * 318.59576 * 9 8 7 12 12 N 1.31061 * 119.99934 * 4.65437 * 11 9 8 13 13 Si 1.86802 * 120.00024 * 184.64505 * 11 9 8 14 14 H 1.48501 * 109.47029 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46673 * 120.00539 * 13 11 9 16 16 H 1.48494 * 109.47278 * 240.00279 * 13 11 9 17 17 C 1.39465 * 119.86005 * 0.02794 * 5 4 3 18 18 C 1.42369 * 119.34711 * 0.02562 * 17 5 4 19 19 C 1.46799 * 119.93240 * 179.97438 * 18 17 5 20 20 O 1.21304 * 119.99847 * 174.46508 * 19 18 17 21 21 C 1.38930 * 120.12829 * 0.25346 * 18 17 5 22 22 H 1.08004 * 119.66488 * 0.02562 * 4 3 2 23 23 H 1.07994 * 124.05779 * 179.97438 * 7 6 5 24 24 H 0.96999 * 120.00180 * 179.97438 * 12 11 9 25 25 H 1.08001 * 120.00532 * 354.74063 * 19 18 17 26 26 H 1.08006 * 120.04811 * 179.75112 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2643 -0.5848 -1.0559 5 6 4.6583 -0.5922 -1.0715 6 16 5.7717 -1.2515 -2.2623 7 6 7.1454 -0.7644 -1.3876 8 6 6.8100 -0.1211 -0.2284 9 6 7.7629 0.3845 0.6792 10 1 7.6102 1.3485 1.1415 11 6 8.9049 -0.3617 0.9808 12 7 9.1362 -1.4885 0.3527 13 14 10.1023 0.2467 2.2791 14 1 9.6159 1.5344 2.8364 15 1 10.2031 -0.7573 3.3687 16 1 11.4394 0.4463 1.6647 17 6 5.3676 -0.0095 -0.0215 18 6 4.6538 0.5869 1.0564 19 6 5.3874 1.2034 2.1685 20 8 4.7846 1.7993 3.0363 21 6 3.2645 0.5813 1.0607 22 1 2.7183 -1.0367 -1.8709 23 1 8.1611 -0.9418 -1.7087 24 1 9.9293 -2.0064 0.5618 25 1 6.4641 1.1303 2.2118 26 1 2.7244 1.0305 1.8810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281210.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = 18.299120 kcal Electronic energy + Delta-G solvation = -15468.253088 eV Core-core repulsion = 12795.820087 eV Total energy + Delta-G solvation = -2672.433001 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00852 -39.27621 -37.91614 -36.48793 -34.16716 -32.42336 -30.58267 -28.28702 -25.44473 -25.00420 -22.66526 -21.66610 -19.87507 -18.72661 -17.82646 -17.02708 -16.72872 -16.23989 -15.96446 -15.53159 -15.42044 -14.83698 -14.68427 -14.61024 -14.04837 -13.86624 -13.50705 -13.23268 -13.03867 -12.94185 -12.59140 -12.33671 -11.84413 -11.69111 -11.41028 -11.05893 -10.50461 -10.32083 -9.29765 -8.51688 -8.41235 -6.31623 -0.65724 -0.13772 0.91727 1.17637 1.35426 1.48384 1.58960 1.59247 1.73678 1.75260 2.19630 2.31387 2.76310 2.83270 3.21714 3.50082 3.90204 3.99752 4.17241 4.39707 4.55120 4.76058 5.00878 5.06633 5.16255 5.36768 5.46661 5.67531 5.96813 6.38424 6.40379 6.52704 6.82852 6.98557 8.51903 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.007886 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.509891 B = 3549.727826 C = 4694.005006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.291 3.709 3 C -0.049 4.049 4 C 0.019 3.981 5 C -0.184 4.184 6 S 0.118 5.882 7 C -0.314 4.314 8 C 0.046 3.954 9 C -0.482 4.482 10 H 0.093 0.907 11 C 0.037 3.963 12 N -0.845 5.845 13 Si 0.966 3.034 14 H -0.251 1.251 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.008 4.008 18 C -0.163 4.163 19 C 0.380 3.620 20 O -0.501 6.501 21 C -0.019 4.019 22 H 0.164 0.836 23 H 0.137 0.863 24 H 0.281 0.719 25 H 0.139 0.861 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 0.592 -1.966 3.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.024 4.024 3 C -0.055 4.055 4 C -0.006 4.006 5 C -0.299 4.299 6 S 0.383 5.617 7 C -0.450 4.450 8 C 0.037 3.963 9 C -0.516 4.516 10 H 0.110 0.890 11 C -0.176 4.176 12 N -0.474 5.474 13 Si 0.789 3.211 14 H -0.174 1.174 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.021 4.021 18 C -0.166 4.166 19 C 0.243 3.757 20 O -0.378 6.378 21 C -0.043 4.043 22 H 0.182 0.818 23 H 0.155 0.845 24 H 0.091 0.909 25 H 0.154 0.846 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.286 -0.059 -2.942 6.050 hybrid contribution 1.745 0.555 1.718 2.511 sum -3.541 0.495 -1.224 3.779 Atomic orbital electron populations 1.81245 1.12524 1.10335 1.08916 1.25349 0.92001 0.92384 0.92624 1.15388 0.83836 1.08042 0.98275 1.20840 0.90401 0.92928 0.96432 1.22690 0.97521 1.08154 1.01521 1.81826 0.94045 1.62325 1.23472 1.24748 1.01226 1.18461 1.00605 1.17623 0.88929 0.96947 0.92844 1.19253 1.03775 1.05004 1.23563 0.88982 1.26415 0.98850 0.94180 0.98119 1.69893 1.26056 1.12999 1.38411 0.85352 0.78027 0.79626 0.78099 1.17419 1.19948 1.19922 1.20125 0.94257 0.94701 0.93019 1.20466 0.93622 1.04859 0.97634 1.25100 0.97184 0.72771 0.80667 1.90423 1.74406 1.34813 1.38191 1.21209 0.92394 0.94052 0.96612 0.81814 0.84518 0.90904 0.84573 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.74 18.54 19.00 0.35 -13.38 15 2 C 0.29 7.91 15.31 88.33 1.35 9.26 15 3 C -0.05 -1.34 5.72 -21.44 -0.12 -1.46 15 4 C 0.02 0.51 9.75 22.83 0.22 0.74 15 5 C -0.18 -6.25 6.42 22.85 0.15 -6.11 15 6 S 0.12 4.10 22.97 -56.49 -1.30 2.80 15 7 C -0.31 -13.85 9.48 67.47 0.64 -13.21 15 8 C 0.05 2.06 5.52 -20.90 -0.12 1.95 15 9 C -0.48 -21.83 7.31 23.30 0.17 -21.65 15 10 H 0.09 3.89 5.87 -2.91 -0.02 3.87 15 11 C 0.04 1.66 5.45 85.16 0.46 2.12 15 12 N -0.85 -40.60 11.40 21.80 0.25 -40.35 15 13 Si 0.97 35.19 29.56 68.60 2.03 37.22 15 14 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 15 H -0.27 -9.95 7.11 99.48 0.71 -9.25 15 16 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 17 C -0.01 -0.33 6.03 -19.90 -0.12 -0.45 15 18 C -0.16 -5.76 5.91 -19.85 -0.12 -5.88 15 19 C 0.38 13.80 10.86 70.06 0.76 14.56 15 20 O -0.50 -19.29 17.14 -3.10 -0.05 -19.35 15 21 C -0.02 -0.57 9.26 22.75 0.21 -0.36 15 22 H 0.16 3.33 8.06 -2.91 -0.02 3.31 15 23 H 0.14 6.61 7.09 -2.91 -0.02 6.59 15 24 H 0.28 12.55 8.30 -92.71 -0.77 11.78 15 25 H 0.14 5.05 4.35 -2.91 -0.01 5.03 15 26 H 0.15 4.13 7.62 -2.91 -0.02 4.11 15 Total: -1.00 -51.33 259.22 6.03 -45.31 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.26 Total: 8.25 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 3.49 Total: -20.50 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.60 Total: -53.73 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.30 Total: 2.80 kcal Total: -51.33 6.03 -45.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281210.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.606 kcal (2) G-P(sol) polarization free energy of solvation -51.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds