Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38547 * 119.88831 * 156.43234 * 3 2 1 5 5 C 1.39929 * 119.90314 * 179.97438 * 4 3 2 6 6 C 1.46948 * 120.00031 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99893 * 359.97437 * 6 5 4 8 8 C 1.39569 * 119.99690 * 359.96993 * 5 4 3 9 9 C 1.39330 * 120.59970 * 0.02562 * 8 5 4 10 10 S 1.75852 * 129.97393 * 180.31324 * 9 8 5 11 11 C 1.69975 * 93.19933 * 180.02562 * 10 9 8 12 12 C 1.36749 * 111.90553 * 359.64505 * 11 10 9 13 13 C 1.40960 * 123.27094 * 180.26996 * 12 11 10 14 14 H 1.08004 * 120.00422 * 205.81950 * 13 12 11 15 15 C 1.39718 * 119.99826 * 25.81947 * 13 12 11 16 16 N 1.31056 * 120.00261 * 9.85648 * 15 13 12 17 17 Si 1.86807 * 119.99797 * 189.85797 * 15 13 12 18 18 H 1.48498 * 109.47120 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47040 * 120.00113 * 17 15 13 20 20 H 1.48503 * 109.47041 * 239.99851 * 17 15 13 21 21 C 1.39548 * 119.87239 * 359.97438 * 9 8 5 22 22 H 1.07996 * 120.04741 * 359.94039 * 4 3 2 23 23 H 1.07995 * 119.99959 * 179.97438 * 6 5 4 24 24 H 1.08006 * 119.69939 * 179.97438 * 8 5 4 25 25 H 1.07997 * 124.04942 * 179.91647 * 11 10 9 26 26 H 0.96999 * 120.00310 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2578 1.1020 -0.4803 5 6 4.6571 1.1031 -0.4799 6 6 5.3910 2.2699 -0.9893 7 8 4.7839 3.2316 -1.4105 8 6 5.3557 -0.0038 0.0044 9 6 4.6725 -1.1168 0.4899 10 16 5.2929 -2.6215 1.1558 11 6 3.7385 -3.2547 1.4239 12 6 2.7587 -2.3807 1.0415 13 6 1.3825 -2.6604 1.1633 14 1 0.6731 -2.1775 0.5074 15 6 0.9359 -3.5622 2.1325 16 7 1.7624 -4.0001 3.0505 17 14 -0.8392 -4.1440 2.1197 18 1 -1.5611 -3.5059 0.9897 19 1 -0.8752 -5.6200 1.9604 20 1 -1.4925 -3.7682 3.3992 21 6 3.2771 -1.1285 0.4941 22 1 2.7164 1.9580 -0.8549 23 1 6.4710 2.2709 -0.9887 24 1 6.4358 0.0020 0.0020 25 1 3.5474 -4.2286 1.8496 26 1 1.4525 -4.6265 3.7232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281223.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = 27.773995 kcal Electronic energy + Delta-G solvation = -15435.175059 eV Core-core repulsion = 12763.152919 eV Total energy + Delta-G solvation = -2672.022140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62303 -38.23977 -35.76346 -35.13142 -32.56891 -31.08553 -29.04736 -26.29430 -24.45403 -23.22038 -21.56887 -19.88306 -18.53044 -17.00695 -16.27914 -15.78413 -15.28415 -14.89115 -14.51369 -14.27595 -14.22143 -13.41957 -13.03167 -12.69772 -12.37756 -12.27754 -12.17380 -11.65254 -11.57249 -11.20804 -10.93333 -10.62034 -10.29302 -10.18153 -9.72737 -9.63470 -9.37687 -8.84758 -7.78699 -7.00404 -6.81080 -4.49356 0.72357 1.28603 2.37349 2.44442 2.89843 3.05049 3.13963 3.33835 3.46438 3.49036 3.64837 3.92536 4.26597 4.37145 4.61054 5.05833 5.15172 5.26306 5.40164 5.63285 5.93013 6.09126 6.34670 6.54344 6.58287 6.97059 7.07097 7.40848 7.52678 7.71333 8.14849 8.21531 8.56502 8.71785 10.14627 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.007702 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.565477 B = 3634.332634 C = 4737.958951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.275 3.725 3 C -0.007 4.007 4 C -0.032 4.032 5 C -0.212 4.212 6 C 0.392 3.608 7 O -0.472 6.472 8 C -0.001 4.001 9 C -0.171 4.171 10 S 0.071 5.929 11 C -0.324 4.324 12 C 0.064 3.936 13 C -0.437 4.437 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.799 5.799 17 Si 0.907 3.093 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.010 3.990 22 H 0.136 0.864 23 H 0.103 0.897 24 H 0.132 0.868 25 H 0.166 0.834 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.427 3.851 -3.329 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.039 4.039 3 C -0.012 4.012 4 C -0.057 4.057 5 C -0.216 4.216 6 C 0.252 3.748 7 O -0.347 6.347 8 C -0.025 4.025 9 C -0.286 4.286 10 S 0.336 5.664 11 C -0.461 4.461 12 C 0.056 3.944 13 C -0.470 4.470 14 H 0.100 0.900 15 C -0.144 4.144 16 N -0.426 5.426 17 Si 0.731 3.269 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.005 4.005 22 H 0.153 0.847 23 H 0.119 0.881 24 H 0.150 0.850 25 H 0.183 0.817 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.745 3.508 -3.025 9.024 hybrid contribution -1.850 -0.147 0.163 1.863 sum 5.895 3.361 -2.862 7.364 Atomic orbital electron populations 1.81091 1.12113 1.08518 1.08762 1.25329 0.92489 0.92639 0.93457 1.15660 0.84505 0.95356 1.05668 1.20952 0.93215 0.96155 0.95414 1.20315 0.94088 0.97824 1.09327 1.23850 0.94729 0.83779 0.72479 1.90512 1.73537 1.34884 1.35758 1.20812 0.99153 0.89900 0.92625 1.22565 0.96486 1.00930 1.08618 1.82040 1.11536 1.07754 1.65045 1.24590 0.91996 1.05999 1.23475 1.17354 0.94812 0.87437 0.94842 1.19203 0.91406 1.21547 1.14891 0.90014 1.25717 0.99900 0.94903 0.93867 1.69809 1.36608 1.25006 1.11162 0.86235 0.82081 0.79053 0.79495 1.18239 1.19645 1.19849 1.19893 0.91615 0.93860 0.95107 0.84656 0.88120 0.85024 0.81718 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.61 17.80 41.84 0.74 -8.87 15 2 C 0.28 5.82 12.77 -22.48 -0.29 5.54 15 3 C -0.01 -0.13 5.77 -106.34 -0.61 -0.75 15 4 C -0.03 -0.52 9.25 -38.83 -0.36 -0.88 15 5 C -0.21 -2.94 5.85 -105.24 -0.62 -3.55 15 6 C 0.39 4.50 11.44 34.26 0.39 4.89 15 7 O -0.47 -7.12 17.15 5.55 0.10 -7.02 15 8 C 0.00 -0.02 9.79 -38.68 -0.38 -0.39 15 9 C -0.17 -3.11 6.42 -38.69 -0.25 -3.35 15 10 S 0.07 1.32 22.97 -107.50 -2.47 -1.15 15 11 C -0.32 -7.58 9.50 30.19 0.29 -7.29 15 12 C 0.06 1.57 5.65 -106.22 -0.60 0.97 15 13 C -0.44 -11.32 8.36 -38.00 -0.32 -11.64 15 14 H 0.08 2.13 5.30 -52.48 -0.28 1.85 15 15 C 0.07 1.82 5.36 -17.33 -0.09 1.73 15 16 N -0.80 -20.19 10.93 55.54 0.61 -19.59 15 17 Si 0.91 19.57 29.57 -169.99 -5.03 14.54 15 18 H -0.26 -5.76 7.11 56.52 0.40 -5.35 15 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 21 C 0.01 0.21 6.02 -104.71 -0.63 -0.42 15 22 H 0.14 2.04 7.63 -52.49 -0.40 1.64 15 23 H 0.10 0.70 8.06 -52.49 -0.42 0.28 15 24 H 0.13 1.30 8.06 -52.48 -0.42 0.88 15 25 H 0.17 4.13 6.46 -52.49 -0.34 3.79 15 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -28.17 259.73 -6.60 -34.77 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -1.00 Total: -1.44 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.47 Total: -15.16 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 1.35 Total: -28.45 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.10 Total: -7.02 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.47 Total: -1.15 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.17 -6.60 -34.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281223.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.544 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds