Wall clock time and date at job start Mon Mar 30 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38547 * 119.88831 * 156.43234 * 3 2 1 5 5 C 1.39929 * 119.90314 * 179.97438 * 4 3 2 6 6 C 1.46948 * 120.00031 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99893 * 359.97437 * 6 5 4 8 8 C 1.39569 * 119.99690 * 359.96993 * 5 4 3 9 9 C 1.39330 * 120.59970 * 0.02562 * 8 5 4 10 10 S 1.75852 * 129.97393 * 180.31324 * 9 8 5 11 11 C 1.69975 * 93.19933 * 180.02562 * 10 9 8 12 12 C 1.36749 * 111.90553 * 359.64505 * 11 10 9 13 13 C 1.40960 * 123.27094 * 180.26996 * 12 11 10 14 14 H 1.08004 * 120.00422 * 205.81950 * 13 12 11 15 15 C 1.39718 * 119.99826 * 25.81947 * 13 12 11 16 16 N 1.31056 * 120.00261 * 9.85648 * 15 13 12 17 17 Si 1.86807 * 119.99797 * 189.85797 * 15 13 12 18 18 H 1.48498 * 109.47120 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47040 * 120.00113 * 17 15 13 20 20 H 1.48503 * 109.47041 * 239.99851 * 17 15 13 21 21 C 1.39548 * 119.87239 * 359.97438 * 9 8 5 22 22 H 1.07996 * 120.04741 * 359.94039 * 4 3 2 23 23 H 1.07995 * 119.99959 * 179.97438 * 6 5 4 24 24 H 1.08006 * 119.69939 * 179.97438 * 8 5 4 25 25 H 1.07997 * 124.04942 * 179.91647 * 11 10 9 26 26 H 0.96999 * 120.00310 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2578 1.1020 -0.4803 5 6 4.6571 1.1031 -0.4799 6 6 5.3910 2.2699 -0.9893 7 8 4.7839 3.2316 -1.4105 8 6 5.3557 -0.0038 0.0044 9 6 4.6725 -1.1168 0.4899 10 16 5.2929 -2.6215 1.1558 11 6 3.7385 -3.2547 1.4239 12 6 2.7587 -2.3807 1.0415 13 6 1.3825 -2.6604 1.1633 14 1 0.6731 -2.1775 0.5074 15 6 0.9359 -3.5622 2.1325 16 7 1.7624 -4.0001 3.0505 17 14 -0.8392 -4.1440 2.1197 18 1 -1.5611 -3.5059 0.9897 19 1 -0.8752 -5.6200 1.9604 20 1 -1.4925 -3.7682 3.3992 21 6 3.2771 -1.1285 0.4941 22 1 2.7164 1.9580 -0.8549 23 1 6.4710 2.2709 -0.9887 24 1 6.4358 0.0020 0.0020 25 1 3.5474 -4.2286 1.8496 26 1 1.4525 -4.6265 3.7232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281223.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:41 Heat of formation + Delta-G solvation = 11.637915 kcal Electronic energy + Delta-G solvation = -15435.874772 eV Core-core repulsion = 12763.152919 eV Total energy + Delta-G solvation = -2672.721853 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89568 -39.45650 -37.40750 -36.75779 -34.23702 -32.46364 -30.54711 -28.07517 -25.71448 -24.65464 -22.91785 -21.50726 -19.84384 -18.69952 -17.75709 -17.01767 -16.83830 -16.23901 -16.00943 -15.57818 -15.44735 -14.83129 -14.72163 -14.20483 -13.99036 -13.89792 -13.76904 -13.29288 -13.16382 -12.91875 -12.55954 -12.25960 -11.86941 -11.75458 -11.32014 -11.11933 -10.70677 -10.31960 -9.29056 -8.69923 -8.53140 -6.34206 -0.57921 -0.04845 1.00773 1.07447 1.25693 1.26133 1.38519 1.68585 1.81948 1.89895 2.13887 2.15578 2.83303 2.95322 3.24911 3.50531 3.88859 4.09518 4.26977 4.38129 4.62393 4.84749 5.06873 5.11453 5.18027 5.25474 5.53422 5.70882 5.88833 6.37329 6.51783 6.63244 6.75590 6.85481 8.32278 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.007702 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.565477 B = 3634.332634 C = 4737.958951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.283 3.717 3 C -0.032 4.032 4 C -0.022 4.022 5 C -0.200 4.200 6 C 0.408 3.592 7 O -0.507 6.507 8 C 0.029 3.971 9 C -0.180 4.180 10 S 0.131 5.869 11 C -0.348 4.348 12 C 0.036 3.964 13 C -0.473 4.473 14 H 0.067 0.933 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.959 3.041 18 H -0.275 1.275 19 H -0.256 1.256 20 H -0.267 1.267 21 C -0.027 4.027 22 H 0.144 0.856 23 H 0.173 0.827 24 H 0.192 0.808 25 H 0.139 0.861 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.781 5.570 -4.149 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.030 4.030 3 C -0.037 4.037 4 C -0.046 4.046 5 C -0.205 4.205 6 C 0.270 3.730 7 O -0.382 6.382 8 C 0.006 3.994 9 C -0.295 4.295 10 S 0.396 5.604 11 C -0.485 4.485 12 C 0.027 3.973 13 C -0.507 4.507 14 H 0.085 0.915 15 C -0.177 4.177 16 N -0.455 5.455 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.180 1.180 20 H -0.192 1.192 21 C -0.041 4.041 22 H 0.162 0.838 23 H 0.189 0.811 24 H 0.209 0.791 25 H 0.157 0.843 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.117 5.224 -3.845 12.871 hybrid contribution -2.703 -0.525 0.319 2.772 sum 8.414 4.699 -3.526 10.262 Atomic orbital electron populations 1.81053 1.13215 1.09773 1.10436 1.25853 0.93167 0.91604 0.92406 1.15807 0.83462 0.96448 1.07964 1.21226 0.94842 0.94927 0.93650 1.20880 0.93006 0.99081 1.07491 1.24616 0.96878 0.81340 0.70200 1.90543 1.74703 1.35901 1.37079 1.21375 1.01824 0.87326 0.88907 1.22869 0.95380 1.02153 1.09103 1.81510 1.07080 1.07134 1.64668 1.24586 0.95485 1.05410 1.23001 1.17691 0.94661 0.89285 0.95658 1.19354 0.92471 1.23020 1.15810 0.91451 1.26320 1.02871 0.94940 0.93594 1.69861 1.37791 1.26043 1.11825 0.85475 0.78296 0.79209 0.78813 1.19961 1.18030 1.19231 1.19816 0.93388 0.93445 0.97415 0.83809 0.81096 0.79108 0.84346 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -22.05 17.80 19.00 0.34 -21.72 15 2 C 0.28 12.48 12.77 88.33 1.13 13.61 15 3 C -0.03 -1.23 5.77 -20.98 -0.12 -1.35 15 4 C -0.02 -0.66 9.25 22.75 0.21 -0.45 15 5 C -0.20 -4.52 5.85 -20.27 -0.12 -4.64 15 6 C 0.41 6.66 11.44 70.10 0.80 7.46 15 7 O -0.51 -12.86 17.15 -3.05 -0.05 -12.92 15 8 C 0.03 0.63 9.79 22.85 0.22 0.85 15 9 C -0.18 -6.04 6.42 22.85 0.15 -5.89 15 10 S 0.13 4.61 22.97 -56.49 -1.30 3.31 15 11 C -0.35 -16.75 9.50 67.47 0.64 -16.11 15 12 C 0.04 1.84 5.65 -20.90 -0.12 1.72 15 13 C -0.47 -25.91 8.36 23.29 0.19 -25.71 15 14 H 0.07 3.76 5.30 -2.91 -0.02 3.75 15 15 C 0.04 1.90 5.36 85.17 0.46 2.35 15 16 N -0.83 -43.74 10.93 21.80 0.24 -43.50 15 17 Si 0.96 42.07 29.57 68.60 2.03 44.10 15 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 21 C -0.03 -1.13 6.02 -19.92 -0.12 -1.25 15 22 H 0.14 4.06 7.63 -2.91 -0.02 4.04 15 23 H 0.17 0.72 8.06 -2.91 -0.02 0.70 15 24 H 0.19 2.03 8.06 -2.91 -0.02 2.00 15 25 H 0.14 7.30 6.46 -2.91 -0.02 7.29 15 26 H 0.28 13.72 8.30 -92.71 -0.77 12.96 15 Total: -1.00 -67.52 259.73 5.83 -61.69 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: 1.25 Total: -1.56 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 3.32 Total: -29.41 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: 0.58 Total: -65.21 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.05 Total: -12.92 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.30 Total: 3.31 kcal Total: -67.52 5.83 -61.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281223.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.328 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds