Wall clock time and date at job start Mon Mar 30 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.34067 * 124.74749 * 88.03340 * 3 2 1 5 5 C 1.39877 * 115.57502 * 179.97438 * 4 3 2 6 6 C 1.39698 * 112.75855 * 359.97438 * 5 4 3 7 7 S 1.75519 * 124.74171 * 268.02971 * 3 2 1 8 8 C 1.42251 * 119.70862 * 180.02562 * 6 5 4 9 9 C 1.40417 * 119.68274 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00284 * 333.18446 * 9 8 6 11 11 C 1.40477 * 119.99803 * 153.18020 * 9 8 6 12 12 N 1.30522 * 120.00337 * 343.09186 * 11 9 8 13 13 Si 1.86808 * 119.99813 * 163.09650 * 11 9 8 14 14 H 1.48494 * 109.46920 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46986 * 120.00237 * 13 11 9 16 16 H 1.48497 * 109.46881 * 240.00015 * 13 11 9 17 17 C 1.40570 * 120.63353 * 0.02562 * 8 6 5 18 18 C 1.36119 * 120.89183 * 359.97438 * 17 8 6 19 19 C 1.39785 * 120.78140 * 0.23619 * 18 17 8 20 20 C 1.46381 * 120.07053 * 179.72085 * 19 18 17 21 21 O 1.21376 * 119.99877 * 0.02562 * 20 19 18 22 22 H 1.08007 * 122.21410 * 359.97242 * 4 3 2 23 23 H 0.96998 * 120.00289 * 179.97438 * 12 11 9 24 24 H 1.08010 * 119.55279 * 179.97438 * 17 8 6 25 25 H 1.08006 * 119.61008 * 179.97438 * 18 17 8 26 26 H 1.07998 * 119.99667 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3322 -0.0368 -1.1009 5 6 4.7130 -0.0280 -0.8781 6 6 5.0412 0.0198 0.4789 7 16 3.5682 0.0507 1.4414 8 6 6.4077 0.0352 0.8737 9 6 6.7369 0.0838 2.2378 10 1 6.0517 0.5302 2.9432 11 6 7.9576 -0.4484 2.6851 12 7 8.6307 -1.2674 1.9237 13 14 8.6176 0.0162 4.3699 14 1 7.6730 0.9522 5.0307 15 1 8.7630 -1.2072 5.1991 16 1 9.9413 0.6722 4.2192 17 6 7.4317 0.0033 -0.0888 18 6 7.1406 -0.0434 -1.4177 19 6 5.8144 -0.0560 -1.8595 20 6 5.5191 -0.1003 -3.2925 21 8 6.4262 -0.1266 -4.0985 22 1 2.9095 -0.0716 -2.0943 23 1 9.4737 -1.6346 2.2324 24 1 8.4635 0.0161 0.2304 25 1 7.9437 -0.0668 -2.1395 26 1 4.4940 -0.1103 -3.6325 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:25 Heat of formation + Delta-G solvation = 23.478605 kcal Electronic energy + Delta-G solvation = -15243.695070 eV Core-core repulsion = 12571.486668 eV Total energy + Delta-G solvation = -2672.208402 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81451 -37.41767 -36.63191 -35.23936 -33.41207 -30.55809 -28.93745 -26.63703 -24.07703 -22.87298 -20.79535 -20.25922 -18.27236 -17.55010 -16.03673 -15.63832 -15.36526 -14.93033 -14.09205 -13.95018 -13.69627 -13.34086 -13.22604 -12.97270 -12.64607 -12.40637 -12.10714 -12.04535 -11.51776 -11.42338 -11.10144 -10.68394 -10.54099 -10.21984 -9.89758 -9.62853 -8.75780 -8.67284 -7.76060 -7.45386 -7.17938 -4.94537 0.71670 1.70192 1.98397 2.59330 2.68436 2.74093 2.76886 2.82566 3.14590 3.38881 3.48181 3.57672 4.14201 4.23545 5.08663 5.27283 5.59959 5.68421 5.98888 6.16860 6.32847 6.39150 6.60029 6.74554 6.85599 7.05439 7.32655 7.52194 7.59980 7.66813 8.01753 8.10285 8.26909 8.49652 9.46478 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.008310 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.089262 B = 3368.718224 C = 4943.133236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.295 3.705 3 C -0.154 4.154 4 C -0.053 4.053 5 C -0.010 4.010 6 C -0.192 4.192 7 S 0.147 5.853 8 C 0.160 3.840 9 C -0.413 4.413 10 H 0.093 0.907 11 C 0.071 3.929 12 N -0.740 5.740 13 Si 0.918 3.082 14 H -0.253 1.253 15 H -0.267 1.267 16 H -0.264 1.264 17 C -0.197 4.197 18 C -0.003 4.003 19 C -0.309 4.309 20 C 0.382 3.618 21 O -0.519 6.519 22 H 0.140 0.860 23 H 0.296 0.704 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 1.395 2.450 3.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.020 4.020 3 C -0.273 4.273 4 C -0.092 4.092 5 C -0.018 4.018 6 C -0.309 4.309 7 S 0.416 5.584 8 C 0.153 3.847 9 C -0.439 4.439 10 H 0.111 0.889 11 C -0.155 4.155 12 N -0.361 5.361 13 Si 0.740 3.260 14 H -0.176 1.176 15 H -0.191 1.191 16 H -0.188 1.188 17 C -0.220 4.220 18 C -0.022 4.022 19 C -0.316 4.316 20 C 0.250 3.750 21 O -0.401 6.401 22 H 0.158 0.842 23 H 0.107 0.893 24 H 0.143 0.857 25 H 0.126 0.874 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.011 1.269 3.677 4.919 hybrid contribution 0.997 -0.038 -0.650 1.191 sum -2.014 1.231 3.027 3.839 Atomic orbital electron populations 1.81222 1.11327 1.10620 1.07608 1.24516 0.91165 0.92814 0.93532 1.19452 0.88486 1.19291 1.00057 1.20018 0.92274 0.98829 0.98057 1.18717 0.90976 0.99694 0.92449 1.23088 0.97070 1.15982 0.94758 1.83791 0.94447 1.75797 1.04407 1.17046 0.87207 0.86503 0.93913 1.20033 1.01594 1.28827 0.93455 0.88888 1.26221 0.95720 0.92597 1.00924 1.69666 1.12341 1.16735 1.37358 0.86050 0.79948 0.80057 0.79913 1.17582 1.19136 1.18838 1.20635 0.99067 1.11222 0.91057 1.20498 0.94451 0.91552 0.95700 1.20481 0.91761 1.26809 0.92501 1.23150 0.92764 0.71027 0.88078 1.90434 1.50955 1.41417 1.57336 0.84244 0.89250 0.85661 0.87430 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.33 18.54 41.84 0.78 -6.56 15 2 C 0.29 4.74 15.76 -22.47 -0.35 4.39 15 3 C -0.15 -2.50 6.19 -39.13 -0.24 -2.74 15 4 C -0.05 -0.86 9.64 -40.44 -0.39 -1.25 15 5 C -0.01 -0.20 6.01 -104.95 -0.63 -0.83 15 6 C -0.19 -3.93 6.37 -37.50 -0.24 -4.17 15 7 S 0.15 2.55 22.82 -107.50 -2.45 0.09 15 8 C 0.16 3.55 5.57 -106.66 -0.59 2.95 15 9 C -0.41 -8.86 8.78 -37.92 -0.33 -9.20 15 10 H 0.09 1.89 7.76 -52.49 -0.41 1.48 15 11 C 0.07 1.44 5.11 -17.27 -0.09 1.36 15 12 N -0.74 -15.66 11.00 55.58 0.61 -15.05 15 13 Si 0.92 15.11 29.60 -169.99 -5.03 10.08 15 14 H -0.25 -4.14 7.11 56.52 0.40 -3.74 15 15 H -0.27 -4.36 7.11 56.52 0.40 -3.96 15 16 H -0.26 -4.31 7.11 56.52 0.40 -3.90 15 17 C -0.20 -4.39 8.53 -39.46 -0.34 -4.73 15 18 C 0.00 -0.06 9.47 -39.77 -0.38 -0.44 15 19 C -0.31 -6.32 6.08 -102.25 -0.62 -6.94 15 20 C 0.38 7.20 11.28 34.01 0.38 7.59 15 21 O -0.52 -11.35 17.12 5.47 0.09 -11.26 15 22 H 0.14 1.87 7.43 -52.48 -0.39 1.48 15 23 H 0.30 5.55 8.29 -40.82 -0.34 5.21 15 24 H 0.13 2.83 6.19 -52.48 -0.32 2.51 15 25 H 0.11 2.26 7.60 -52.48 -0.40 1.86 15 26 H 0.07 1.02 7.32 -52.49 -0.38 0.64 15 LS Contribution 263.78 15.07 3.98 3.98 Total: -1.00 -24.26 263.78 -6.89 -31.16 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -1.04 Total: 1.57 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.82 Total: -14.01 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 1.39 Total: -21.61 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 15.11 SS G_CDS: -5.03 Total: 10.08 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.45 Total: 0.09 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -24.26 -6.89 -31.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.634 kcal (2) G-P(sol) polarization free energy of solvation -24.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds