Wall clock time and date at job start Mon Mar 30 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.34067 * 124.74749 * 88.03340 * 3 2 1 5 5 C 1.39877 * 115.57502 * 179.97438 * 4 3 2 6 6 C 1.39698 * 112.75855 * 359.97438 * 5 4 3 7 7 S 1.75519 * 124.74171 * 268.02971 * 3 2 1 8 8 C 1.42251 * 119.70862 * 180.02562 * 6 5 4 9 9 C 1.40417 * 119.68274 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00284 * 333.18446 * 9 8 6 11 11 C 1.40477 * 119.99803 * 153.18020 * 9 8 6 12 12 N 1.30522 * 120.00337 * 343.09186 * 11 9 8 13 13 Si 1.86808 * 119.99813 * 163.09650 * 11 9 8 14 14 H 1.48494 * 109.46920 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46986 * 120.00237 * 13 11 9 16 16 H 1.48497 * 109.46881 * 240.00015 * 13 11 9 17 17 C 1.40570 * 120.63353 * 0.02562 * 8 6 5 18 18 C 1.36119 * 120.89183 * 359.97438 * 17 8 6 19 19 C 1.39785 * 120.78140 * 0.23619 * 18 17 8 20 20 C 1.46381 * 120.07053 * 179.72085 * 19 18 17 21 21 O 1.21376 * 119.99877 * 0.02562 * 20 19 18 22 22 H 1.08007 * 122.21410 * 359.97242 * 4 3 2 23 23 H 0.96998 * 120.00289 * 179.97438 * 12 11 9 24 24 H 1.08010 * 119.55279 * 179.97438 * 17 8 6 25 25 H 1.08006 * 119.61008 * 179.97438 * 18 17 8 26 26 H 1.07998 * 119.99667 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3322 -0.0368 -1.1009 5 6 4.7130 -0.0280 -0.8781 6 6 5.0412 0.0198 0.4789 7 16 3.5682 0.0507 1.4414 8 6 6.4077 0.0352 0.8737 9 6 6.7369 0.0838 2.2378 10 1 6.0517 0.5302 2.9432 11 6 7.9576 -0.4484 2.6851 12 7 8.6307 -1.2674 1.9237 13 14 8.6176 0.0162 4.3699 14 1 7.6730 0.9522 5.0307 15 1 8.7630 -1.2072 5.1991 16 1 9.9413 0.6722 4.2192 17 6 7.4317 0.0033 -0.0888 18 6 7.1406 -0.0434 -1.4177 19 6 5.8144 -0.0560 -1.8595 20 6 5.5191 -0.1003 -3.2925 21 8 6.4262 -0.1266 -4.0985 22 1 2.9095 -0.0716 -2.0943 23 1 9.4737 -1.6346 2.2324 24 1 8.4635 0.0161 0.2304 25 1 7.9437 -0.0668 -2.1395 26 1 4.4940 -0.1103 -3.6325 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:25 Heat of formation + Delta-G solvation = 12.772275 kcal Electronic energy + Delta-G solvation = -15244.159331 eV Core-core repulsion = 12571.486668 eV Total energy + Delta-G solvation = -2672.672663 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34232 -38.96143 -38.03578 -36.70710 -34.94725 -32.15498 -30.43624 -28.21571 -25.52715 -24.42922 -22.28726 -21.78980 -19.71172 -19.09123 -17.55330 -17.11063 -16.86589 -16.39748 -15.58474 -15.32842 -15.13527 -14.80217 -14.78328 -14.42258 -14.05556 -13.91287 -13.56445 -13.53110 -12.92687 -12.88391 -12.56651 -12.13725 -11.95444 -11.71508 -11.41368 -11.17236 -10.30073 -10.18401 -9.29583 -8.98400 -8.67289 -6.56801 -0.70631 0.32437 0.43408 1.12959 1.25737 1.34292 1.40376 1.55613 1.84465 1.89911 2.10616 2.23442 2.69650 2.78075 3.46744 3.87578 4.18556 4.30556 4.45589 4.69813 4.83597 4.89230 5.04877 5.23496 5.31970 5.47205 5.70499 5.93003 6.03238 6.29927 6.39625 6.49365 6.65285 6.99739 7.97105 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.008310 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.089262 B = 3368.718224 C = 4943.133236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.311 3.689 3 C -0.139 4.139 4 C -0.048 4.048 5 C -0.009 4.009 6 C -0.223 4.223 7 S 0.169 5.831 8 C 0.140 3.860 9 C -0.434 4.434 10 H 0.099 0.901 11 C 0.038 3.962 12 N -0.772 5.772 13 Si 0.985 3.015 14 H -0.249 1.249 15 H -0.262 1.262 16 H -0.261 1.261 17 C -0.219 4.219 18 C -0.016 4.016 19 C -0.324 4.324 20 C 0.389 3.611 21 O -0.552 6.552 22 H 0.178 0.822 23 H 0.304 0.696 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 1.576 2.806 4.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.005 4.005 3 C -0.259 4.259 4 C -0.086 4.086 5 C -0.018 4.018 6 C -0.340 4.340 7 S 0.438 5.562 8 C 0.134 3.866 9 C -0.460 4.460 10 H 0.117 0.883 11 C -0.185 4.185 12 N -0.393 5.393 13 Si 0.804 3.196 14 H -0.172 1.172 15 H -0.186 1.186 16 H -0.186 1.186 17 C -0.242 4.242 18 C -0.035 4.035 19 C -0.330 4.330 20 C 0.259 3.741 21 O -0.436 6.436 22 H 0.195 0.805 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.722 1.447 4.027 6.372 hybrid contribution 1.445 -0.109 -0.781 1.646 sum -3.276 1.339 3.246 4.802 Atomic orbital electron populations 1.81262 1.11634 1.10863 1.07975 1.24234 0.90699 0.92403 0.93129 1.19412 0.88474 1.18307 0.99676 1.20189 0.90587 0.97938 0.99844 1.18906 0.92172 0.98991 0.91741 1.23315 0.97640 1.16769 0.96259 1.83683 0.92815 1.75484 1.04212 1.17293 0.88227 0.86787 0.94317 1.20299 1.02712 1.29485 0.93476 0.88307 1.27018 0.95387 0.91939 1.04142 1.69700 1.13001 1.17483 1.39104 0.85074 0.79196 0.79767 0.75569 1.17236 1.18605 1.18562 1.20567 0.98748 1.13212 0.91701 1.20579 0.95445 0.92133 0.95358 1.20784 0.91503 1.26638 0.94028 1.23689 0.94407 0.69212 0.86804 1.90431 1.52547 1.42824 1.57830 0.80505 0.88401 0.87119 0.88068 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.65 18.54 19.00 0.35 -13.30 15 2 C 0.31 8.95 15.76 88.33 1.39 10.34 15 3 C -0.14 -4.10 6.19 22.56 0.14 -3.96 15 4 C -0.05 -1.39 9.64 21.72 0.21 -1.18 15 5 C -0.01 -0.35 6.01 -20.07 -0.12 -0.47 15 6 C -0.22 -9.03 6.37 23.62 0.15 -8.88 15 7 S 0.17 5.58 22.82 -56.49 -1.29 4.30 15 8 C 0.14 6.36 5.57 -21.18 -0.12 6.24 15 9 C -0.43 -18.90 8.78 23.35 0.21 -18.70 15 10 H 0.10 4.03 7.76 -2.91 -0.02 4.00 15 11 C 0.04 1.57 5.11 85.43 0.44 2.00 15 12 N -0.77 -33.52 11.00 21.92 0.24 -33.28 15 13 Si 0.98 30.64 29.60 68.60 2.03 32.68 15 14 H -0.25 -7.55 7.11 99.48 0.71 -6.84 15 15 H -0.26 -7.88 7.11 99.48 0.71 -7.17 15 16 H -0.26 -7.95 7.11 99.48 0.71 -7.25 15 17 C -0.22 -10.23 8.53 22.35 0.19 -10.04 15 18 C -0.02 -0.71 9.47 22.15 0.21 -0.50 15 19 C -0.32 -13.01 6.08 -18.33 -0.11 -13.12 15 20 C 0.39 13.88 11.28 69.94 0.79 14.67 15 21 O -0.55 -23.67 17.12 -3.33 -0.06 -23.73 15 22 H 0.18 3.80 7.43 -2.91 -0.02 3.77 15 23 H 0.30 11.67 8.29 -92.71 -0.77 10.90 15 24 H 0.11 5.33 6.19 -2.91 -0.02 5.32 15 25 H 0.10 4.48 7.60 -2.91 -0.02 4.46 15 26 H 0.12 3.08 7.32 -2.91 -0.02 3.06 15 Total: -1.00 -52.55 263.78 5.90 -46.65 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.25 Total: 10.26 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.37 Total: -23.58 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.59 Total: -46.58 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 30.64 SS G_CDS: 2.03 Total: 32.68 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.29 Total: 4.30 kcal Total: -52.55 5.90 -46.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.422 kcal (2) G-P(sol) polarization free energy of solvation -52.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds