Wall clock time and date at job start Mon Mar 30 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.38358 * 120.46539 * 103.80145 * 3 2 1 5 5 C 1.40751 * 120.65672 * 179.97438 * 4 3 2 6 6 C 1.46401 * 128.67450 * 179.97438 * 5 4 3 7 7 C 1.41782 * 123.14737 * 0.02562 * 6 5 4 8 8 O 1.21404 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.35708 * 113.70384 * 180.02562 * 6 5 4 10 10 S 1.69928 * 112.13938 * 0.02562 * 9 6 5 11 11 C 1.40089 * 120.28969 * 0.02562 * 5 4 3 12 12 C 1.39131 * 120.56751 * 359.71843 * 11 5 4 13 13 C 1.40230 * 120.49417 * 0.55942 * 12 11 5 14 14 C 1.40563 * 120.54093 * 179.72099 * 13 12 11 15 15 H 1.07998 * 120.00318 * 206.09271 * 14 13 12 16 16 C 1.40159 * 120.00048 * 26.08822 * 14 13 12 17 17 N 1.30722 * 120.00566 * 199.27906 * 16 14 13 18 18 Si 1.86806 * 119.99790 * 19.28497 * 16 14 13 19 19 H 1.48510 * 109.46953 * 264.85491 * 18 16 14 20 20 H 1.48493 * 109.47234 * 24.85538 * 18 16 14 21 21 H 1.48499 * 109.47065 * 144.86026 * 18 16 14 22 22 H 1.08003 * 119.67504 * 359.95671 * 4 3 2 23 23 H 1.08002 * 119.99874 * 179.97438 * 7 6 5 24 24 H 1.08001 * 123.93324 * 180.02562 * 9 6 5 25 25 H 1.08004 * 119.75455 * 180.28226 * 12 11 5 26 26 H 0.96995 * 119.99977 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 0.2854 -1.1581 5 6 4.6769 0.2877 -1.1626 6 6 5.5878 0.5611 -2.2756 7 6 5.1408 0.8814 -3.5824 8 8 3.9517 0.9387 -3.8203 9 6 6.9000 0.4793 -1.9394 10 16 7.1179 0.0773 -0.3027 11 6 5.3876 0.0000 0.0099 12 6 4.7143 -0.2855 1.1934 13 6 3.3125 -0.3013 1.2286 14 6 2.6312 -0.5953 2.4225 15 1 1.6369 -1.0153 2.3874 16 6 3.2424 -0.3436 3.6584 17 7 2.8059 -0.9395 4.7369 18 14 4.6809 0.8435 3.7644 19 1 5.9554 0.0845 3.6927 20 1 4.6133 1.8053 2.6351 21 1 4.6177 1.5842 5.0499 22 1 2.7316 0.5080 -2.0679 23 1 5.8582 1.0744 -4.3663 24 1 7.7115 0.6498 -2.6314 25 1 5.2754 -0.5010 2.0908 26 1 3.2292 -0.7655 5.5922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281432.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:45 Heat of formation + Delta-G solvation = 9.453971 kcal Electronic energy + Delta-G solvation = -15523.547157 eV Core-core repulsion = 12850.730601 eV Total energy + Delta-G solvation = -2672.816556 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70266 -39.32108 -37.42737 -36.46646 -35.02652 -32.19737 -31.49041 -27.38330 -26.52015 -24.29144 -23.40172 -21.25917 -19.71293 -18.81543 -18.37819 -17.47644 -16.82235 -16.14498 -16.01939 -15.42595 -15.18409 -14.84327 -14.64730 -14.62574 -14.31094 -13.91630 -13.72332 -13.46936 -13.20678 -12.79066 -12.77816 -12.32325 -11.99987 -11.71847 -11.46563 -11.08753 -10.51175 -10.38087 -9.46968 -9.16859 -8.67046 -6.69794 -0.32566 -0.04507 0.64273 0.70919 1.14826 1.21866 1.36190 1.46359 1.79116 1.81792 2.05011 2.30510 2.55757 3.21932 3.28571 3.68628 3.96105 4.12637 4.44420 4.53575 4.66849 4.79261 4.89896 4.97961 5.12199 5.34017 5.49955 5.55878 5.83205 5.96901 6.33343 6.44895 6.67954 6.73785 7.88534 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.009471 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.570243 B = 2955.572659 C = 4225.712176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.299 3.701 3 C -0.148 4.148 4 C 0.023 3.977 5 C -0.181 4.181 6 C -0.197 4.197 7 C 0.401 3.599 8 O -0.515 6.515 9 C -0.161 4.161 10 S 0.171 5.829 11 C -0.090 4.090 12 C -0.236 4.236 13 C 0.123 3.877 14 C -0.438 4.438 15 H 0.061 0.939 16 C 0.052 3.948 17 N -0.805 5.805 18 Si 0.960 3.040 19 H -0.239 1.239 20 H -0.245 1.245 21 H -0.270 1.270 22 H 0.130 0.870 23 H 0.157 0.843 24 H 0.224 0.776 25 H 0.118 0.882 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.445 3.802 -8.368 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.012 4.012 3 C -0.153 4.153 4 C 0.000 4.000 5 C -0.186 4.186 6 C -0.212 4.212 7 C 0.262 3.738 8 O -0.393 6.393 9 C -0.297 4.297 10 S 0.438 5.562 11 C -0.206 4.206 12 C -0.262 4.262 13 C 0.115 3.885 14 C -0.466 4.466 15 H 0.079 0.921 16 C -0.169 4.169 17 N -0.427 5.427 18 Si 0.781 3.219 19 H -0.163 1.163 20 H -0.168 1.168 21 H -0.197 1.197 22 H 0.147 0.853 23 H 0.173 0.827 24 H 0.241 0.759 25 H 0.135 0.865 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.319 3.527 -7.365 17.359 hybrid contribution -1.154 0.183 -0.095 1.172 sum 14.165 3.709 -7.460 16.433 Atomic orbital electron populations 1.81024 1.12956 1.13567 1.10336 1.25793 0.92826 0.91444 0.91167 1.16944 0.83321 1.18291 0.96755 1.20841 0.92796 0.91147 0.95240 1.18625 0.92607 1.14418 0.92972 1.20059 0.92903 1.10855 0.97369 1.23051 0.90933 0.70214 0.89560 1.90515 1.23029 1.40810 1.84967 1.25816 0.99978 1.02072 1.01845 1.82710 0.99767 1.70444 1.03292 1.22763 0.98678 1.02188 0.96931 1.20112 0.92475 1.17089 0.96493 1.18245 0.91373 0.88237 0.90613 1.19514 1.02460 1.34134 0.90460 0.92110 1.27088 0.99876 0.95963 0.94022 1.69623 1.38514 1.32732 1.01863 0.85559 0.77832 0.79430 0.79120 1.16323 1.16791 1.19650 0.85268 0.82666 0.75938 0.86475 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -25.09 18.54 19.00 0.35 -24.74 15 2 C 0.30 14.54 14.30 88.33 1.26 15.81 15 3 C -0.15 -6.85 5.92 -19.77 -0.12 -6.97 15 4 C 0.02 0.94 9.21 22.91 0.21 1.15 15 5 C -0.18 -6.71 6.02 -20.09 -0.12 -6.83 15 6 C -0.20 -5.28 5.83 -20.86 -0.12 -5.40 15 7 C 0.40 9.33 11.29 68.70 0.78 10.11 15 8 O -0.51 -17.14 15.43 -3.41 -0.05 -17.19 15 9 C -0.16 -3.09 10.64 67.23 0.72 -2.37 15 10 S 0.17 4.25 22.97 -56.49 -1.30 2.95 15 11 C -0.09 -3.33 6.40 22.93 0.15 -3.18 15 12 C -0.24 -10.03 7.21 22.97 0.17 -9.87 15 13 C 0.12 5.91 5.34 -19.99 -0.11 5.80 15 14 C -0.44 -22.95 9.07 23.30 0.21 -22.74 15 15 H 0.06 3.55 7.56 -2.91 -0.02 3.53 15 16 C 0.05 2.52 5.41 85.32 0.46 2.98 15 17 N -0.81 -39.96 13.92 21.86 0.30 -39.65 15 18 Si 0.96 37.36 24.46 68.60 1.68 39.04 15 19 H -0.24 -8.34 6.66 99.48 0.66 -7.67 15 20 H -0.24 -9.81 6.82 99.48 0.68 -9.14 15 21 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 22 H 0.13 5.30 6.25 -2.91 -0.02 5.29 15 23 H 0.16 1.66 8.06 -2.91 -0.02 1.64 15 24 H 0.22 1.74 8.06 -2.91 -0.02 1.71 15 25 H 0.12 4.79 4.28 -2.91 -0.01 4.78 15 26 H 0.31 13.33 8.29 -92.71 -0.77 12.56 15 Total: -1.00 -63.20 255.06 5.65 -57.56 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.18 Total: 3.55 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.48 Total: -21.51 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.66 Total: -64.39 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.05 Total: -17.19 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 1.68 Total: 39.04 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.95 kcal Total: -63.20 5.65 -57.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281432.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.011 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds