Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.42834 * 120.06356 * 157.53250 * 3 2 1 5 5 C 1.39253 * 128.37387 * 0.06030 * 4 3 2 6 6 C 1.37216 * 115.08382 * 179.97438 * 5 4 3 7 7 C 1.39667 * 124.83799 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99890 * 359.97438 * 7 6 5 9 9 C 1.40397 * 120.00032 * 179.97438 * 7 6 5 10 10 N 1.30631 * 120.00024 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00065 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47429 * 59.99803 * 11 9 7 13 13 H 1.48505 * 109.46979 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47115 * 299.99758 * 11 9 7 15 15 S 1.75447 * 110.32280 * 0.02562 * 6 5 4 16 16 C 1.40674 * 118.65345 * 180.02562 * 4 3 2 17 17 C 1.39846 * 120.17284 * 0.02562 * 16 4 3 18 18 C 1.37370 * 121.05442 * 359.97438 * 17 16 4 19 19 C 1.40093 * 120.29839 * 0.26088 * 18 17 16 20 20 C 1.46803 * 120.02325 * 179.72100 * 19 18 17 21 21 O 1.21297 * 120.00159 * 359.97438 * 20 19 18 22 22 H 1.08004 * 122.45779 * 359.97438 * 5 4 3 23 23 H 0.96998 * 119.99793 * 180.02562 * 10 9 7 24 24 H 1.07998 * 119.47338 * 180.02562 * 17 16 4 25 25 H 1.08002 * 119.84821 * 179.97438 * 18 17 16 26 26 H 1.08003 * 119.99757 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2831 1.1433 -0.4724 5 6 2.7708 2.3403 -0.9663 6 6 3.7123 3.2628 -1.3474 7 6 3.4260 4.5266 -1.8683 8 1 2.3998 4.8380 -1.9965 9 6 4.4721 5.3923 -2.2255 10 7 5.7132 5.0154 -2.0709 11 14 4.0890 7.0829 -2.9216 12 1 3.3030 7.8601 -1.9300 13 1 5.3579 7.7962 -3.2154 14 1 3.3018 6.9365 -4.1722 15 16 5.3272 2.6285 -1.0869 16 6 4.6894 1.1117 -0.4597 17 6 5.3628 -0.0212 0.0078 18 6 4.6727 -1.1189 0.4616 19 6 3.2718 -1.1238 0.4586 20 6 2.5403 -2.3024 0.9392 21 8 3.1489 -3.2727 1.3386 22 1 1.7101 2.5287 -1.0437 23 1 6.4359 5.6136 -2.3173 24 1 6.4427 -0.0331 0.0129 25 1 5.2126 -1.9837 0.8180 26 1 1.4603 -2.3059 0.9363 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281439.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = -3.115616 kcal Electronic energy + Delta-G solvation = -15151.540316 eV Core-core repulsion = 12478.178702 eV Total energy + Delta-G solvation = -2673.361614 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82869 -39.35942 -37.42418 -36.84331 -35.01163 -32.37225 -31.12351 -27.66610 -26.10897 -24.18032 -23.07057 -20.68473 -20.43496 -19.14132 -17.83503 -17.14886 -16.83437 -16.49154 -15.57237 -15.56378 -15.43761 -14.71346 -14.53079 -14.28343 -14.05210 -13.93522 -13.75673 -13.44383 -13.22392 -13.14788 -12.17191 -12.12426 -12.05039 -11.99785 -11.16861 -11.16677 -10.81667 -10.32533 -9.41196 -9.05885 -8.38090 -6.69138 -0.62910 0.08210 1.16449 1.25103 1.36034 1.46755 1.52044 1.61426 1.80153 1.84971 2.00905 2.09685 2.79211 3.04597 3.19645 3.23605 3.95946 4.28569 4.41955 4.64088 4.76820 4.78380 4.99266 5.21719 5.32408 5.45040 5.53971 5.68336 5.91186 6.03235 6.23743 6.31574 6.41296 6.51310 7.80070 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.005876 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.278783 B = 4763.837456 C = 5535.269737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.284 3.716 3 C -0.056 4.056 4 C 0.037 3.963 5 C -0.395 4.395 6 C 0.028 3.972 7 C -0.386 4.386 8 H 0.105 0.895 9 C 0.022 3.978 10 N -0.777 5.777 11 Si 1.011 2.989 12 H -0.256 1.256 13 H -0.255 1.255 14 H -0.256 1.256 15 S 0.161 5.839 16 C -0.254 4.254 17 C -0.032 4.032 18 C -0.134 4.134 19 C -0.119 4.119 20 C 0.396 3.604 21 O -0.480 6.480 22 H 0.095 0.905 23 H 0.321 0.679 24 H 0.146 0.854 25 H 0.150 0.850 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 0.174 -0.078 3.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.028 4.028 3 C -0.062 4.062 4 C 0.027 3.973 5 C -0.419 4.419 6 C -0.092 4.092 7 C -0.419 4.419 8 H 0.123 0.877 9 C -0.201 4.201 10 N -0.402 5.402 11 Si 0.828 3.172 12 H -0.180 1.180 13 H -0.178 1.178 14 H -0.180 1.180 15 S 0.421 5.579 16 C -0.369 4.369 17 C -0.055 4.055 18 C -0.155 4.155 19 C -0.126 4.126 20 C 0.257 3.743 21 O -0.354 6.354 22 H 0.113 0.887 23 H 0.135 0.865 24 H 0.164 0.836 25 H 0.168 0.832 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.945 0.299 -0.133 3.959 hybrid contribution -1.413 0.326 -0.132 1.456 sum 2.532 0.625 -0.265 2.622 Atomic orbital electron populations 1.81129 1.12393 1.09503 1.11704 1.25748 0.92658 0.92152 0.92258 1.15884 0.83112 0.95947 1.11278 1.17821 0.92302 0.92351 0.94828 1.19525 0.97783 0.96911 1.27658 1.21806 0.95517 0.96857 0.94987 1.19841 0.96683 0.96166 1.29188 0.87702 1.27307 0.93402 1.05844 0.93511 1.68494 1.01571 1.39319 1.30799 0.84744 0.79753 0.73316 0.79355 1.17990 1.17822 1.17978 1.84731 1.05678 1.02153 1.65311 1.24234 0.96723 1.04097 1.11857 1.20679 1.00247 0.90078 0.94491 1.20900 0.91826 0.99236 1.03540 1.20438 0.95378 0.94391 1.02349 1.24055 0.95319 0.83576 0.71379 1.90474 1.73851 1.35184 1.35933 0.88716 0.86499 0.83613 0.83224 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.77 18.54 19.00 0.35 -18.42 15 2 C 0.28 11.04 13.38 88.33 1.18 12.22 15 3 C -0.06 -2.19 5.85 -20.37 -0.12 -2.31 15 4 C 0.04 1.61 5.83 -21.29 -0.12 1.49 15 5 C -0.39 -18.94 9.68 22.27 0.22 -18.72 15 6 C 0.03 1.35 6.11 22.37 0.14 1.48 15 7 C -0.39 -17.46 9.27 23.14 0.21 -17.25 15 8 H 0.11 4.54 7.85 -2.91 -0.02 4.52 15 9 C 0.02 0.86 5.50 85.40 0.47 1.33 15 10 N -0.78 -31.41 10.58 21.91 0.23 -31.18 15 11 Si 1.01 29.74 29.56 68.60 2.03 31.77 15 12 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 13 H -0.25 -6.85 7.11 99.48 0.71 -6.15 15 14 H -0.26 -7.49 7.11 99.48 0.71 -6.78 15 15 S 0.16 6.90 20.13 -56.49 -1.14 5.76 15 16 C -0.25 -10.43 6.48 23.25 0.15 -10.28 15 17 C -0.03 -1.07 10.02 22.45 0.22 -0.84 15 18 C -0.13 -4.28 9.56 22.52 0.22 -4.07 15 19 C -0.12 -4.05 5.88 -20.07 -0.12 -4.17 15 20 C 0.40 11.96 10.98 70.06 0.77 12.73 15 21 O -0.48 -16.04 17.14 -3.08 -0.05 -16.10 15 22 H 0.09 4.66 7.91 -2.91 -0.02 4.64 15 23 H 0.32 11.23 8.29 -92.71 -0.77 10.47 15 24 H 0.15 4.00 8.06 -2.91 -0.02 3.97 15 25 H 0.15 4.13 7.62 -2.91 -0.02 4.11 15 26 H 0.11 2.97 7.16 -2.91 -0.02 2.95 15 Total: -1.00 -51.49 262.69 5.88 -45.61 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.24 Total: 10.93 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 3.22 Total: -28.38 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.58 Total: -49.60 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.05 Total: -16.10 kcal Atomic # 14 Polarization: 29.74 SS G_CDS: 2.03 Total: 31.77 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -1.14 Total: 5.76 kcal Total: -51.49 5.88 -45.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281439.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.497 kcal (2) G-P(sol) polarization free energy of solvation -51.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds