Wall clock time and date at job start Mon Mar 30 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.33726 * 122.85576 * 356.98498 * 3 2 1 5 5 S 1.75203 * 111.33882 * 180.02562 * 4 3 2 6 6 C 1.75958 * 92.51277 * 0.02562 * 5 4 3 7 7 C 1.39750 * 110.02644 * 0.02562 * 6 5 4 8 8 C 1.40130 * 119.35445 * 179.97438 * 7 6 5 9 9 C 1.40138 * 120.60789 * 0.06652 * 8 7 6 10 10 C 1.41349 * 119.98754 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00098 * 334.57994 * 10 9 8 12 12 C 1.39867 * 120.00342 * 154.57741 * 10 9 8 13 13 N 1.30892 * 119.99508 * 342.45973 * 12 10 9 14 14 Si 1.86793 * 120.00566 * 162.45993 * 12 10 9 15 15 H 1.48502 * 109.47076 * 59.99942 * 14 12 10 16 16 H 1.48496 * 109.47593 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47062 * 300.00468 * 14 12 10 18 18 C 1.40639 * 120.02957 * 359.93577 * 9 8 7 19 19 C 1.38667 * 119.68531 * 0.02562 * 18 9 8 20 20 C 1.46862 * 119.83789 * 180.02562 * 19 18 9 21 21 O 1.21301 * 119.99638 * 180.02562 * 20 19 18 22 22 H 1.07995 * 124.33255 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.69114 * 180.02562 * 8 7 6 24 24 H 0.97006 * 119.99646 * 179.97438 * 13 12 10 25 25 H 1.07993 * 120.15701 * 180.29105 * 18 9 8 26 26 H 1.07993 * 120.00249 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2940 -1.1208 0.0591 5 16 5.0106 -0.7707 0.0414 6 6 4.7344 0.9647 -0.0489 7 6 3.3626 1.2310 -0.0626 8 6 2.9213 2.5592 -0.1311 9 6 3.8413 3.6148 -0.1870 10 6 3.3816 4.9496 -0.2565 11 1 2.4068 5.1643 -0.6689 12 6 4.1891 5.9925 0.2091 13 7 5.1946 5.7355 1.0066 14 14 3.8325 7.7519 -0.3073 15 1 2.4666 8.1306 0.1356 16 1 4.8260 8.6621 0.3169 17 1 3.9216 7.8616 -1.7856 18 6 5.2218 3.3467 -0.1733 19 6 5.6660 2.0348 -0.1048 20 6 7.1068 1.7510 -0.0897 21 8 7.4985 0.6045 -0.0304 22 1 2.8758 -2.1151 0.1110 23 1 1.8623 2.7711 -0.1416 24 1 5.7549 6.4588 1.3292 25 1 5.9326 4.1588 -0.2116 26 1 7.8176 2.5630 -0.1323 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281448.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:56 Heat of formation + Delta-G solvation = 25.786757 kcal Electronic energy + Delta-G solvation = -15363.226993 eV Core-core repulsion = 12691.118680 eV Total energy + Delta-G solvation = -2672.108313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.98834 -37.85596 -36.35825 -34.83509 -33.12960 -30.55315 -28.86067 -25.88753 -24.35348 -23.27326 -21.24796 -20.33300 -17.71215 -16.84943 -16.48989 -15.86958 -15.18716 -14.69493 -14.24231 -13.89993 -13.77082 -13.44047 -13.41274 -12.85387 -12.68216 -12.17021 -11.96295 -11.70335 -11.40334 -11.28601 -10.99694 -10.55344 -10.43288 -10.22559 -10.12582 -9.44961 -9.04960 -8.63338 -7.72395 -7.25678 -7.04971 -4.69966 1.12245 1.62995 2.15786 2.42991 2.66208 2.87154 2.91119 2.94102 3.11424 3.26675 3.69277 3.87320 4.25604 4.54901 4.95331 5.11200 5.20413 5.73528 6.00214 6.11352 6.30120 6.44689 6.57438 6.83547 6.94194 7.01322 7.17147 7.47373 7.68856 7.89087 7.99281 8.12078 8.38738 8.48558 9.80980 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.007707 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.206366 B = 3632.148842 C = 4956.336310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.287 3.713 3 C -0.042 4.042 4 C -0.169 4.169 5 S 0.140 5.860 6 C -0.195 4.195 7 C -0.023 4.023 8 C -0.184 4.184 9 C 0.100 3.900 10 C -0.448 4.448 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.791 5.791 14 Si 0.916 3.084 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.048 4.048 19 C -0.155 4.155 20 C 0.382 3.618 21 O -0.479 6.479 22 H 0.163 0.837 23 H 0.102 0.898 24 H 0.289 0.711 25 H 0.140 0.860 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -2.817 -1.522 4.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.029 4.029 3 C -0.062 4.062 4 C -0.309 4.309 5 S 0.405 5.595 6 C -0.311 4.311 7 C -0.030 4.030 8 C -0.207 4.207 9 C 0.096 3.904 10 C -0.477 4.477 11 H 0.104 0.896 12 C -0.144 4.144 13 N -0.416 5.416 14 Si 0.740 3.260 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.069 4.069 19 C -0.160 4.160 20 C 0.244 3.756 21 O -0.355 6.355 22 H 0.180 0.820 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.158 0.842 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.189 -4.238 -1.290 5.458 hybrid contribution -1.117 1.890 -0.092 2.197 sum 2.072 -2.347 -1.382 3.423 Atomic orbital electron populations 1.81146 1.11978 1.08332 1.10536 1.25286 0.92112 0.92778 0.92767 1.15868 0.84689 0.93730 1.11891 1.25619 1.00135 1.00789 1.04317 1.84153 0.98638 1.00246 1.76450 1.21913 0.95255 0.95370 1.18562 1.18366 0.90001 0.92059 1.02538 1.20820 0.98465 0.89508 1.11904 1.17358 0.90815 0.92996 0.89214 1.19605 1.03123 0.90099 1.34838 0.89577 1.25977 0.93754 1.02405 0.92284 1.69748 1.14213 1.36075 1.21538 0.86210 0.79558 0.80007 0.80274 1.18728 1.20037 1.18480 1.21880 0.97107 0.93154 0.94745 1.19905 0.93540 0.92891 1.09655 1.24064 0.90640 0.91304 0.69639 1.90418 1.82259 1.25871 1.36963 0.81951 0.87965 0.90005 0.84229 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.63 18.54 41.84 0.78 -7.85 15 2 C 0.29 5.33 15.33 -22.47 -0.34 4.98 15 3 C -0.04 -0.78 5.82 -106.18 -0.62 -1.39 15 4 C -0.17 -2.66 10.82 29.15 0.32 -2.35 15 5 S 0.14 2.42 21.27 -107.50 -2.29 0.13 15 6 C -0.20 -4.00 6.35 -37.58 -0.24 -4.24 15 7 C -0.02 -0.48 6.00 -105.25 -0.63 -1.11 15 8 C -0.18 -4.12 9.53 -38.16 -0.36 -4.48 15 9 C 0.10 2.30 5.55 -107.10 -0.59 1.71 15 10 C -0.45 -10.29 9.03 -37.79 -0.34 -10.63 15 11 H 0.09 1.93 7.90 -52.48 -0.41 1.51 15 12 C 0.08 1.61 5.13 -17.34 -0.09 1.53 15 13 N -0.79 -17.31 10.98 55.54 0.61 -16.70 15 14 Si 0.92 16.35 29.59 -169.99 -5.03 11.32 15 15 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 16 H -0.28 -4.80 7.11 56.52 0.40 -4.40 15 17 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 18 C -0.05 -1.03 8.38 -38.52 -0.32 -1.35 15 19 C -0.15 -3.13 5.89 -104.82 -0.62 -3.75 15 20 C 0.38 6.75 11.42 34.22 0.39 7.14 15 21 O -0.48 -9.29 15.73 5.54 0.09 -9.20 15 22 H 0.16 1.97 8.06 -52.49 -0.42 1.55 15 23 H 0.10 2.25 8.01 -52.49 -0.42 1.83 15 24 H 0.29 5.73 8.30 -40.82 -0.34 5.39 15 25 H 0.14 2.91 6.18 -52.49 -0.32 2.59 15 26 H 0.10 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -25.01 263.16 -6.47 -31.48 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -1.14 Total: 0.82 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -3.45 Total: -13.95 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 1.39 Total: -24.55 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 16.35 SS G_CDS: -5.03 Total: 11.32 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.29 Total: 0.13 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -25.01 -6.47 -31.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281448.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.263 kcal (2) G-P(sol) polarization free energy of solvation -25.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds