Wall clock time and date at job start Mon Mar 30 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40885 * 120.44969 * 134.08071 * 3 2 1 5 5 S 1.76022 * 130.10689 * 0.02562 * 4 3 2 6 6 C 1.75459 * 91.64600 * 179.97438 * 5 4 3 7 7 C 1.41819 * 124.78203 * 179.97438 * 6 5 4 8 8 O 1.21395 * 119.99497 * 180.02562 * 7 6 5 9 9 C 1.35591 * 110.43772 * 359.97438 * 6 5 4 10 10 C 1.39829 * 115.43415 * 0.02562 * 9 6 5 11 11 C 1.42379 * 127.93176 * 180.02562 * 10 9 6 12 12 C 1.34850 * 121.99405 * 179.97438 * 11 10 9 13 13 C 1.41395 * 120.60331 * 0.29725 * 12 11 10 14 14 C 1.40248 * 120.58978 * 179.71909 * 13 12 11 15 15 H 1.08007 * 119.99875 * 154.94771 * 14 13 12 16 16 C 1.40467 * 120.00308 * 334.94934 * 14 13 12 17 17 N 1.30534 * 119.99990 * 342.64704 * 16 14 13 18 18 Si 1.86798 * 120.00051 * 162.64533 * 16 14 13 19 19 H 1.48499 * 109.47091 * 89.99939 * 18 16 14 20 20 H 1.48503 * 109.47127 * 210.00165 * 18 16 14 21 21 H 1.48498 * 109.47277 * 330.00336 * 18 16 14 22 22 H 1.07990 * 120.00232 * 0.02562 * 7 6 5 23 23 H 1.07999 * 122.28601 * 180.02562 * 9 6 5 24 24 H 1.08001 * 119.00115 * 359.97397 * 11 10 9 25 25 H 1.08003 * 119.69930 * 180.02562 * 12 11 10 26 26 H 0.96996 * 120.00041 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2816 0.8459 -0.8725 5 16 2.6951 2.0007 -2.0644 6 6 4.3320 2.4409 -2.5177 7 6 4.6673 3.3996 -3.5076 8 8 5.8323 3.6370 -3.7525 9 6 5.2313 1.7353 -1.7884 10 6 4.6844 0.8394 -0.8645 11 6 5.3757 -0.0259 0.0302 12 6 4.7228 -0.8470 0.8775 13 6 3.3095 -0.8807 0.9014 14 6 2.6308 -1.7390 1.7787 15 1 1.6258 -1.5025 2.0959 16 6 3.2579 -2.9063 2.2447 17 7 4.3071 -3.3752 1.6256 18 14 2.5905 -3.7877 3.7503 19 1 1.5838 -4.7947 3.3287 20 1 3.7037 -4.4678 4.4599 21 1 1.9532 -2.8015 4.6594 22 1 3.8863 3.9184 -4.0433 23 1 6.2972 1.8569 -1.9126 24 1 6.4558 -0.0246 0.0303 25 1 5.2846 -1.4880 1.5409 26 1 4.7404 -4.1810 1.9476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281488.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:37 Heat of formation + Delta-G solvation = 5.462849 kcal Electronic energy + Delta-G solvation = -15196.997287 eV Core-core repulsion = 12524.007663 eV Total energy + Delta-G solvation = -2672.989624 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39780 -39.60480 -37.32385 -36.78263 -34.70233 -31.92867 -31.21069 -28.37043 -25.37644 -24.63720 -23.06095 -20.76793 -20.00692 -19.14985 -17.63709 -17.55889 -16.69739 -16.47440 -15.53445 -15.39786 -15.14633 -15.12829 -14.74142 -14.26054 -13.83124 -13.65304 -13.59955 -13.49772 -13.09440 -12.91032 -12.47569 -12.16357 -11.89752 -11.76503 -11.45148 -11.14788 -10.82333 -10.34706 -9.44422 -9.17855 -8.58074 -6.77324 -0.50462 0.29238 0.69386 0.94763 1.15064 1.35220 1.45898 1.52735 1.95880 1.98668 2.06939 2.43007 2.48952 3.38374 3.49026 3.62179 4.24656 4.43524 4.52942 4.56431 4.69103 4.78737 4.94248 5.08654 5.23009 5.56920 5.59308 5.74533 5.81982 6.15675 6.31234 6.49459 6.58343 6.88947 7.76904 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.006099 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.015700 B = 4589.606566 C = 5358.551662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.298 3.702 3 C -0.215 4.215 4 C -0.011 4.011 5 S 0.084 5.916 6 C -0.374 4.374 7 C 0.421 3.579 8 O -0.519 6.519 9 C 0.023 3.977 10 C -0.228 4.228 11 C -0.038 4.038 12 C -0.149 4.149 13 C 0.144 3.856 14 C -0.394 4.394 15 H 0.088 0.912 16 C 0.041 3.959 17 N -0.745 5.745 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.246 1.246 21 H -0.257 1.257 22 H 0.130 0.870 23 H 0.150 0.850 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 0.699 0.948 3.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.010 4.010 3 C -0.230 4.230 4 C -0.131 4.131 5 S 0.348 5.652 6 C -0.489 4.489 7 C 0.287 3.713 8 O -0.400 6.400 9 C -0.008 4.008 10 C -0.234 4.234 11 C -0.059 4.059 12 C -0.168 4.168 13 C 0.136 3.864 14 C -0.419 4.419 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.364 5.364 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.169 1.169 21 H -0.180 1.180 22 H 0.146 0.854 23 H 0.168 0.832 24 H 0.154 0.846 25 H 0.154 0.846 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.031 1.176 0.208 1.577 hybrid contribution 1.251 -0.980 0.968 1.861 sum 2.282 0.195 1.177 2.575 Atomic orbital electron populations 1.81011 1.12738 1.13382 1.12827 1.25732 0.92648 0.91197 0.91428 1.16088 0.82887 1.14079 1.09932 1.22758 0.96785 0.96666 0.96841 1.83612 1.06464 1.38546 1.36586 1.23515 0.96517 1.14875 1.14008 1.22013 0.91463 0.78624 0.79217 1.90509 1.24844 1.61648 1.62992 1.20737 1.00589 0.89747 0.89701 1.17916 0.90933 1.07475 1.07037 1.20721 0.99684 0.92777 0.92729 1.20924 0.93097 1.00738 1.02037 1.18684 0.92556 0.88041 0.87128 1.20319 1.01503 1.02673 1.17423 0.89428 1.27039 0.94018 0.97221 1.00264 1.69595 1.14286 1.18223 1.34330 0.85079 0.79775 0.78453 0.76208 1.18623 1.16922 1.18025 0.85381 0.83213 0.84596 0.84555 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.64 18.54 19.00 0.35 -24.28 15 2 C 0.30 13.89 14.01 88.33 1.24 15.12 15 3 C -0.21 -9.71 5.98 -19.30 -0.12 -9.83 15 4 C -0.01 -0.46 6.35 23.42 0.15 -0.32 15 5 S 0.08 3.02 22.91 -56.49 -1.29 1.73 15 6 C -0.37 -12.67 6.19 22.54 0.14 -12.53 15 7 C 0.42 12.55 11.47 68.71 0.79 13.34 15 8 O -0.52 -18.44 17.45 -3.39 -0.06 -18.50 15 9 C 0.02 0.83 9.78 22.04 0.22 1.04 15 10 C -0.23 -8.89 5.86 -21.37 -0.13 -9.01 15 11 C -0.04 -1.42 9.91 22.52 0.22 -1.20 15 12 C -0.15 -6.02 8.58 22.27 0.19 -5.83 15 13 C 0.14 6.44 5.72 -19.93 -0.11 6.33 15 14 C -0.39 -17.14 8.56 23.30 0.20 -16.94 15 15 H 0.09 3.89 7.37 -2.91 -0.02 3.87 15 16 C 0.04 1.58 5.15 85.43 0.44 2.02 15 17 N -0.74 -28.44 10.96 21.91 0.24 -28.20 15 18 Si 0.99 28.98 29.60 68.60 2.03 31.01 15 19 H -0.26 -7.79 7.11 99.48 0.71 -7.08 15 20 H -0.25 -6.46 7.11 99.48 0.71 -5.75 15 21 H -0.26 -7.76 7.11 99.48 0.71 -7.05 15 22 H 0.13 2.77 8.06 -2.92 -0.02 2.75 15 23 H 0.15 4.78 7.93 -2.91 -0.02 4.76 15 24 H 0.14 4.11 8.06 -2.91 -0.02 4.08 15 25 H 0.14 5.33 6.19 -2.91 -0.02 5.31 15 26 H 0.32 10.29 8.29 -92.71 -0.77 9.52 15 Total: -1.00 -51.38 264.21 5.74 -45.64 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.24 Total: 10.41 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.23 Total: -17.81 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.59 Total: -52.48 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.06 Total: -18.50 kcal Atomic # 14 Polarization: 28.98 SS G_CDS: 2.03 Total: 31.01 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.29 Total: 1.73 kcal Total: -51.38 5.74 -45.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281488.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.100 kcal (2) G-P(sol) polarization free energy of solvation -51.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds