Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35192 * 124.70211 * 49.21988 * 3 2 1 5 5 C 1.40128 * 115.44576 * 180.02562 * 4 3 2 6 6 C 1.41629 * 127.67529 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.73236 * 179.64417 * 6 5 4 8 8 C 1.46379 * 120.38363 * 180.32908 * 7 6 5 9 9 O 1.21365 * 119.99871 * 176.07125 * 8 7 6 10 10 C 1.47111 * 119.22996 * 0.65781 * 7 6 5 11 11 C 1.40288 * 120.55189 * 179.67426 * 10 7 6 12 12 H 1.07991 * 120.00243 * 34.15544 * 11 10 7 13 13 C 1.40309 * 119.99404 * 214.16581 * 11 10 7 14 14 N 1.30629 * 119.99440 * 191.23955 * 13 11 10 15 15 Si 1.86801 * 120.00611 * 11.23454 * 13 11 10 16 16 H 1.48503 * 109.47101 * 267.39713 * 15 13 11 17 17 H 1.48498 * 109.46861 * 27.39599 * 15 13 11 18 18 H 1.48501 * 109.47010 * 147.39397 * 15 13 11 19 19 C 1.40188 * 118.89265 * 359.39315 * 10 7 6 20 20 C 1.39142 * 120.53971 * 0.27903 * 19 10 7 21 21 S 1.75406 * 124.69866 * 229.22456 * 3 2 1 22 22 H 1.08008 * 122.27361 * 359.97438 * 4 3 2 23 23 H 1.08003 * 119.63770 * 0.03165 * 6 5 4 24 24 H 1.08005 * 120.00330 * 356.06497 * 8 7 6 25 25 H 0.97005 * 119.99787 * 179.97438 * 14 13 11 26 26 H 1.08001 * 119.72773 * 180.30132 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3379 -0.7250 -0.8416 5 6 4.7209 -0.5776 -0.6706 6 6 5.7558 -1.2093 -1.4025 7 6 7.0834 -0.9515 -1.1149 8 6 8.1469 -1.6033 -1.8810 9 8 9.3079 -1.3185 -1.6710 10 6 7.4148 -0.0204 -0.0253 11 6 8.7525 0.2559 0.2946 12 1 9.4996 0.2827 -0.4847 13 6 9.1196 0.4972 1.6271 14 7 10.3069 0.9671 1.9025 15 14 7.9106 0.1468 3.0073 16 1 7.1401 1.3784 3.3152 17 1 6.9771 -0.9288 2.5864 18 1 8.6533 -0.2880 4.2175 19 6 6.3715 0.5908 0.6841 20 6 5.0448 0.3166 0.3666 21 16 3.5660 0.9429 1.0921 22 1 2.9158 -1.3747 -1.5941 23 1 5.5053 -1.8952 -2.1982 24 1 7.8986 -2.3375 -2.6331 25 1 10.5606 1.1343 2.8238 26 1 6.5994 1.2804 1.4835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281709.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = 13.805022 kcal Electronic energy + Delta-G solvation = -15365.584470 eV Core-core repulsion = 12692.956590 eV Total energy + Delta-G solvation = -2672.627880 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.42450 -39.08740 -37.79139 -36.46364 -34.92951 -32.31972 -31.24328 -27.93231 -25.30478 -24.32962 -23.30213 -20.92206 -19.70019 -19.63784 -17.72448 -17.22917 -16.79327 -16.37601 -15.49654 -15.26532 -15.09711 -14.96972 -14.80899 -14.47514 -14.16143 -14.06402 -13.92234 -13.55166 -13.14680 -12.83867 -12.59464 -12.22787 -11.84846 -11.66889 -11.45969 -11.10090 -10.44520 -10.16213 -9.30033 -9.06462 -8.66008 -6.63096 -0.41372 0.06037 0.38760 1.01884 1.03320 1.24330 1.34673 1.43959 1.83078 1.98688 2.00457 2.30894 2.59147 2.97948 3.31317 3.77197 3.96745 4.32720 4.51733 4.56363 4.76939 4.85147 5.02769 5.06768 5.16101 5.41453 5.62997 5.67651 5.92697 6.16842 6.44103 6.48782 6.57142 7.07665 7.90300 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.024352 B = 0.007657 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.523324 B = 3655.761141 C = 4642.784354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.316 3.684 3 C -0.212 4.212 4 C 0.037 3.963 5 C -0.233 4.233 6 C 0.059 3.941 7 C -0.289 4.289 8 C 0.379 3.621 9 O -0.512 6.512 10 C 0.116 3.884 11 C -0.402 4.402 12 H 0.094 0.906 13 C 0.045 3.955 14 N -0.804 5.804 15 Si 0.956 3.044 16 H -0.256 1.256 17 H -0.243 1.243 18 H -0.272 1.272 19 C -0.255 4.255 20 C -0.042 4.042 21 S 0.073 5.927 22 H 0.182 0.818 23 H 0.179 0.821 24 H 0.148 0.852 25 H 0.305 0.695 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 -4.748 -3.308 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C 0.002 3.998 3 C -0.330 4.330 4 C 0.003 3.997 5 C -0.238 4.238 6 C 0.039 3.961 7 C -0.291 4.291 8 C 0.243 3.757 9 O -0.391 6.391 10 C 0.109 3.891 11 C -0.429 4.429 12 H 0.111 0.889 13 C -0.176 4.176 14 N -0.427 5.427 15 Si 0.778 3.222 16 H -0.182 1.182 17 H -0.166 1.166 18 H -0.199 1.199 19 C -0.282 4.282 20 C -0.159 4.159 21 S 0.335 5.665 22 H 0.200 0.800 23 H 0.196 0.804 24 H 0.163 0.837 25 H 0.116 0.884 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.950 -3.511 -1.914 9.803 hybrid contribution 0.836 -0.403 -0.063 0.931 sum -8.113 -3.914 -1.976 9.223 Atomic orbital electron populations 1.81240 1.12015 1.10977 1.10311 1.24381 0.90908 0.92167 0.92338 1.19016 0.87835 1.15177 1.10975 1.20584 0.90310 0.93718 0.95058 1.17843 0.93533 1.08480 1.03939 1.21519 0.88858 0.91960 0.93718 1.21866 0.95852 1.05777 1.05615 1.24216 0.86494 0.82049 0.82907 1.90534 1.24795 1.60107 1.63624 1.18675 0.91785 0.87913 0.90744 1.20147 0.95037 1.32794 0.94916 0.88867 1.27165 0.97243 0.90634 1.02552 1.69566 1.20927 1.27610 1.24585 0.85590 0.78667 0.81401 0.76501 1.18156 1.16611 1.19852 1.20212 0.90193 1.09358 1.08460 1.22779 0.96212 0.98532 0.98344 1.84039 0.94560 1.49640 1.38247 0.80043 0.80387 0.83653 0.88404 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.91 18.54 19.00 0.35 -14.56 15 2 C 0.32 9.20 15.77 88.33 1.39 10.60 15 3 C -0.21 -5.99 6.22 22.81 0.14 -5.85 15 4 C 0.04 0.90 10.04 22.03 0.22 1.12 15 5 C -0.23 -7.02 5.85 -21.38 -0.12 -7.14 15 6 C 0.06 1.60 9.76 23.11 0.23 1.82 15 7 C -0.29 -10.30 6.02 -18.82 -0.11 -10.41 15 8 C 0.38 12.44 11.40 69.94 0.80 13.24 15 9 O -0.51 -22.73 14.51 -3.29 -0.05 -22.77 15 10 C 0.12 5.17 5.21 -19.98 -0.10 5.07 15 11 C -0.40 -20.43 8.45 23.27 0.20 -20.23 15 12 H 0.09 5.31 6.00 -2.92 -0.02 5.29 15 13 C 0.05 2.21 5.47 85.38 0.47 2.68 15 14 N -0.80 -40.42 13.92 21.89 0.30 -40.12 15 15 Si 0.96 39.04 24.48 68.60 1.68 40.72 15 16 H -0.26 -10.07 6.73 99.48 0.67 -9.40 15 17 H -0.24 -10.04 6.72 99.48 0.67 -9.37 15 18 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 19 C -0.25 -10.76 7.03 22.96 0.16 -10.60 15 20 C -0.04 -1.54 6.44 23.09 0.15 -1.39 15 21 S 0.07 2.35 23.22 -56.49 -1.31 1.03 15 22 H 0.18 2.88 8.06 -2.91 -0.02 2.86 15 23 H 0.18 2.69 8.06 -2.91 -0.02 2.66 15 24 H 0.15 2.83 8.06 -2.91 -0.02 2.81 15 25 H 0.30 13.56 8.29 -92.70 -0.77 12.79 15 26 H 0.10 4.31 4.78 -2.91 -0.01 4.29 15 Total: -1.00 -60.16 256.12 5.56 -54.60 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.17 Total: 2.18 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 3.41 Total: -21.09 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.66 Total: -54.68 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.68 Total: 40.72 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.03 kcal Total: -60.16 5.56 -54.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281709.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.409 kcal (2) G-P(sol) polarization free energy of solvation -60.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds